RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 CSB-PGBD3P0DP91 1061 aa7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 LMOD1P29536 600 aaPredicted RBP7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 GPKOWQ92917 476 aaPredicted RBP eCLIP7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 CCDC136Q96JN2 1154 aa7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 UCN2Q96RP3 112 aa7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 TFIP11Q9UBB9 837 aaKnown RBP7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 ATP10AO60312 1499 aa7.94□□□□□ -1.14
CHMP4A-210ENST00000552620 ZMYM4Q5VZL5 1548 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 SAMD9LQ8IVG5 1584 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 LAMC1P11047 1609 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 MMP16P51512 607 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 KCNH2Q12809 1159 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 NBPF14Q5TI25 921 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 EVA1BQ9NVM1 165 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 USTQ9Y2C2 406 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 GPSM3Q9Y4H4 160 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 PARD3Q8TEW0 1356 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 UNC13BO14795 1591 aa7.93□□□□□ -1.14
CHMP4A-210ENST00000552620 CDC42BPBQ9Y5S2 1711 aa7.92□□□□□ -1.14
CHMP4A-210ENST00000552620 ADH1BP00325 375 aa7.92□□□□□ -1.14
CHMP4A-210ENST00000552620 PTK2Q05397 1052 aa7.92□□□□□ -1.14
CHMP4A-210ENST00000552620 FAM160A2Q8N612 972 aaPredicted RBP7.92□□□□□ -1.14
CHMP4A-210ENST00000552620 ATP9BO43861 1147 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 ZPR1O75312 459 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 MCCD1P59942 119 aaPredicted RBP7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 TMF1P82094 1093 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 EFCAB2Q5VUJ9 269 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 PDXDC2PQ6P474 469 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 AEBP1Q8IUX7 1158 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 MAFBQ9Y5Q3 323 aaPredicted RBP7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 PLA2R1Q13018 1463 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 DUOX2Q9NRD8 1548 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 TRPM1Q7Z4N2 1603 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 E9PCH4 1651 aa7.91□□□□□ -1.14
CHMP4A-210ENST00000552620 EIF2AK4Q9P2K8 1649 aaKnown RBP7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 PLXNC1O60486 1568 aa7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 ARHGAP5Q13017 1502 aa7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 ERBINQ96RT1 1412 aa7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 SRPK2P78362 688 aaKnown RBP7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 CDCA8Q53HL2 280 aa7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 TBC1D9Q6ZT07 1266 aa7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 NFATC2IPQ8NCF5 419 aa7.9□□□□□ -1.14
CHMP4A-210ENST00000552620 IQGAP3Q86VI3 1631 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 PRDM15P57071 1507 aaPredicted RBP7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 A2MP01023 1474 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 PLCH2O75038 1416 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 PATL2C9JE40 543 aaKnown RBP7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 TCERG1O14776 1098 aaKnown RBP7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 RRP1P56182 461 aaKnown RBP7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 RGL3Q3MIN7 710 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 TESK2Q96S53 571 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 PRDM9Q9NQV7 894 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 RCAN3Q9UKA8 241 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 SHROOM2Q13796 1616 aa7.89□□□□□ -1.15
CHMP4A-210ENST00000552620 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 ABCC2Q92887 1545 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 MAGI2Q86UL8 1455 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 COL17A1Q9UMD9 1497 aaPredicted RBP7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 TLL1O43897 1013 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 CNGB1Q14028 1251 aaPredicted RBP7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 NBPF1Q3BBV0 1214 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 IFFO2Q5TF58 517 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 MTRQ99707 1265 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 PANK3Q9H999 370 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 IL21Q9HBE4 155 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 CCDC9Q9Y3X0 531 aaKnown RBP7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 SYCP2Q9BX26 1530 aa7.88□□□□□ -1.15
CHMP4A-210ENST00000552620 UHRF1BP1LA0JNW5 1464 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 RTEL1-TNFRSF6BF6WH68 1400 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 ATG7O95352 703 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 ANP32AP39687 249 aaKnown RBP7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 CCDC24Q8N4L8 307 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 ARHGAP9Q9BRR9 750 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 SLC6A16Q9GZN6 736 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 VRTNQ9H8Y1 702 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 NOP58Q9Y2X3 529 aaKnown RBP7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 PCDHB9Q9Y5E1 797 aa7.87□□□□□ -1.15
CHMP4A-210ENST00000552620 MYO5CQ9NQX4 1742 aa7.86□□□□□ -1.15
CHMP4A-210ENST00000552620 ITGBL1O95965 494 aaPredicted RBP7.86□□□□□ -1.15
CHMP4A-210ENST00000552620 SKIP12755 728 aa7.86□□□□□ -1.15
CHMP4A-210ENST00000552620 SLFNL1Q499Z3 407 aa7.86□□□□□ -1.15
CHMP4A-210ENST00000552620 UNC93B1Q9H1C4 597 aa7.86□□□□□ -1.15
CHMP4A-210ENST00000552620 BLMP54132 1417 aaPredicted RBP7.86□□□□□ -1.15
CHMP4A-210ENST00000552620 TTC37Q6PGP7 1564 aa7.85□□□□□ -1.15
CHMP4A-210ENST00000552620 ZBTB33Q86T24 672 aa7.85□□□□□ -1.15
CHMP4A-210ENST00000552620 IPO9Q96P70 1041 aaKnown RBP7.85□□□□□ -1.15
CHMP4A-210ENST00000552620 SCAPERQ9BY12 1400 aa7.85□□□□□ -1.15
CHMP4A-210ENST00000552620 ARAP3Q8WWN8 1544 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 USP17L3A6NCW0 530 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 USP17L4A6NCW7 530 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 USP17L5A8MUK1 530 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 PIK3CDO00329 1044 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 BRD1O95696 1058 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 USP17L2Q6R6M4 530 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 USP17L1Q7RTZ2 530 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 PLEKHM2Q8IWE5 1019 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 ADAM32Q8TC27 787 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 PTPRTO14522 1441 aa7.84□□□□□ -1.15
CHMP4A-210ENST00000552620 DISP3Q9P2K9 1392 aa7.84□□□□□ -1.16
CHMP4A-210ENST00000552620 NPC1L1Q9UHC9 1359 aa7.84□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms