RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 RNF25Q96BH1 459 aaPredicted RBP15.09■□□□□ 0.01
VPS29-208ENST00000550267 LRRC4BQ9NT99 713 aa15.09■□□□□ 0.01
VPS29-208ENST00000550267 NLRP2Q9NX02 1062 aa15.09■□□□□ 0.01
VPS29-208ENST00000550267 CHD4Q14839 1912 aa15.09■□□□□ 0.01
VPS29-208ENST00000550267 KTN1Q86UP2 1357 aaKnown RBP15.09■□□□□ 0.01
VPS29-208ENST00000550267 ERBB3P21860 1342 aa15.08■□□□□ 0
VPS29-208ENST00000550267 BTAF1O14981 1849 aa15.08■□□□□ 0
VPS29-208ENST00000550267 IL2RBP14784 551 aa15.07■□□□□ 0
VPS29-208ENST00000550267 GIGYF1O75420 1035 aaPredicted RBP15.06■□□□□ 0
VPS29-208ENST00000550267 HOXB1P14653 301 aaPredicted RBP15.06■□□□□ 0
VPS29-208ENST00000550267 DOK7Q18PE1 504 aa15.06■□□□□ 0
VPS29-208ENST00000550267 ZNF710Q8N1W2 664 aa15.06■□□□□ 0
VPS29-208ENST00000550267 KRTAP3-3Q9BYR6 98 aa15.06■□□□□ 0
VPS29-208ENST00000550267 KRTAP3-2Q9BYR7 98 aa15.06■□□□□ 0
VPS29-208ENST00000550267 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.05■□□□□ -0
VPS29-208ENST00000550267 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.05■□□□□ -0
VPS29-208ENST00000550267 ZFP91Q96JP5 570 aaPredicted RBP15.05■□□□□ -0
VPS29-208ENST00000550267 USP31Q70CQ4 1352 aa15.04■□□□□ -0
VPS29-208ENST00000550267 MICALL2Q8IY33 904 aa15.04■□□□□ -0
VPS29-208ENST00000550267 ANKRD24Q8TF21 1146 aa15.04■□□□□ -0
VPS29-208ENST00000550267 SLC16A10Q8TF71 515 aa15.04■□□□□ -0
VPS29-208ENST00000550267 L3MBTL2Q969R5 705 aa15.04■□□□□ -0
VPS29-208ENST00000550267 MON2Q7Z3U7 1717 aa15.03■□□□□ -0
VPS29-208ENST00000550267 PNPLA7Q6ZV29 1317 aa15.03■□□□□ -0
VPS29-208ENST00000550267 POLD1P28340 1107 aa15.03■□□□□ -0
VPS29-208ENST00000550267 NME9Q86XW9 330 aa15.03■□□□□ -0
VPS29-208ENST00000550267 SLC27A3Q5K4L6 730 aa15.02■□□□□ -0
VPS29-208ENST00000550267 IFFO2Q5TF58 517 aa15.02■□□□□ -0
VPS29-208ENST00000550267 NLGN2Q8NFZ4 835 aa15.02■□□□□ -0
VPS29-208ENST00000550267 ROCK2O75116 1388 aaKnown RBP15.01□□□□□ -0.01
VPS29-208ENST00000550267 QSER1Q2KHR3 1735 aa15.01□□□□□ -0.01
VPS29-208ENST00000550267 SHANK3Q9BYB0 1731 aa15.01□□□□□ -0.01
VPS29-208ENST00000550267 USP54Q70EL1 1684 aa15.01□□□□□ -0.01
VPS29-208ENST00000550267 KCNQ4P56696 695 aa15.01□□□□□ -0.01
VPS29-208ENST00000550267 DDX54Q8TDD1 881 aaKnown RBP15.01□□□□□ -0.01
VPS29-208ENST00000550267 LTN1O94822 1766 aa15.01□□□□□ -0.01
VPS29-208ENST00000550267 COL24A1Q17RW2 1714 aa15□□□□□ -0.01
VPS29-208ENST00000550267 MS4A4AQ96JQ5 239 aa15□□□□□ -0.01
VPS29-208ENST00000550267 TFCP2L1Q9NZI6 479 aa15□□□□□ -0.01
VPS29-208ENST00000550267 CD163L1Q9NR16 1453 aa15□□□□□ -0.01
VPS29-208ENST00000550267 SBNO2Q9Y2G9 1366 aa14.99□□□□□ -0.01
VPS29-208ENST00000550267 TUBGCP6Q96RT7 1819 aa14.99□□□□□ -0.01
VPS29-208ENST00000550267 RIMBP2O15034 1052 aa14.98□□□□□ -0.01
VPS29-208ENST00000550267 YBX3P16989 372 aaKnown RBP eCLIP14.98□□□□□ -0.01
VPS29-208ENST00000550267 TMEM92Q6UXU6 159 aa14.98□□□□□ -0.01
VPS29-208ENST00000550267 PRIM1P49642 420 aaKnown RBP14.97□□□□□ -0.01
VPS29-208ENST00000550267 SYTL4Q96C24 671 aaPredicted RBP14.97□□□□□ -0.01
VPS29-208ENST00000550267 TMC1Q8TDI8 760 aa14.96□□□□□ -0.01
VPS29-208ENST00000550267 LTV1Q96GA3 475 aaPredicted RBP14.96□□□□□ -0.01
VPS29-208ENST00000550267 SIN3AQ96ST3 1273 aa14.96□□□□□ -0.01
VPS29-208ENST00000550267 NSD2O96028 1365 aa14.96□□□□□ -0.02
VPS29-208ENST00000550267 ANKRD36BQ8N2N9 1353 aa14.96□□□□□ -0.02
VPS29-208ENST00000550267 DOT1LQ8TEK3 1739 aa14.95□□□□□ -0.02
VPS29-208ENST00000550267 HDGFL2Q7Z4V5 671 aaPredicted RBP14.95□□□□□ -0.02
VPS29-208ENST00000550267 IP6K1Q92551 441 aa14.95□□□□□ -0.02
VPS29-208ENST00000550267 EDC4Q6P2E9 1401 aaKnown RBP14.94□□□□□ -0.02
VPS29-208ENST00000550267 GRIN3BO60391 1043 aa14.94□□□□□ -0.02
VPS29-208ENST00000550267 SLC12A5Q9H2X9 1139 aa14.94□□□□□ -0.02
VPS29-208ENST00000550267 LY75O60449 1722 aa14.94□□□□□ -0.02
VPS29-208ENST00000550267 ATP10DQ9P241 1426 aa14.93□□□□□ -0.02
VPS29-208ENST00000550267 COL23A1Q86Y22 540 aaPredicted RBP14.93□□□□□ -0.02
VPS29-208ENST00000550267 ZSWIM6Q9HCJ5 1215 aa14.93□□□□□ -0.02
VPS29-208ENST00000550267 CCNL1Q9UK58 526 aaPredicted RBP14.93□□□□□ -0.02
VPS29-208ENST00000550267 TAOK2Q9UL54 1235 aa14.93□□□□□ -0.02
VPS29-208ENST00000550267 NEUROD1Q13562 356 aa14.92□□□□□ -0.02
VPS29-208ENST00000550267 MSL1Q68DK7 614 aa14.92□□□□□ -0.02
VPS29-208ENST00000550267 FAM208AQ9UK61 1670 aaKnown RBP14.92□□□□□ -0.02
VPS29-208ENST00000550267 A0A1W2PP64 1363 aa14.91□□□□□ -0.02
VPS29-208ENST00000550267 ZCRB1Q8TBF4 217 aaKnown RBP14.9□□□□□ -0.02
VPS29-208ENST00000550267 GOLGB1Q14789 3259 aaKnown RBP14.9□□□□□ -0.02
VPS29-208ENST00000550267 MEGF6O75095 1541 aa14.9□□□□□ -0.02
VPS29-208ENST00000550267 HOXC9P31274 260 aa14.89□□□□□ -0.03
VPS29-208ENST00000550267 TERF2IPQ9NYB0 399 aa14.89□□□□□ -0.03
VPS29-208ENST00000550267 KAT6BQ8WYB5 2073 aa14.89□□□□□ -0.03
VPS29-208ENST00000550267 MAP3K19Q56UN5 1328 aa14.89□□□□□ -0.03
VPS29-208ENST00000550267 USP47Q96K76 1375 aa14.88□□□□□ -0.03
VPS29-208ENST00000550267 FBLN1P23142 703 aa14.88□□□□□ -0.03
VPS29-208ENST00000550267 CARD11Q9BXL7 1154 aa14.88□□□□□ -0.03
VPS29-208ENST00000550267 AMPHP49418 695 aa14.87□□□□□ -0.03
VPS29-208ENST00000550267 ZNF526Q8TF50 670 aaPredicted RBP14.87□□□□□ -0.03
VPS29-208ENST00000550267 GPBP1L1Q9HC44 474 aaPredicted RBP14.87□□□□□ -0.03
VPS29-208ENST00000550267 RGPD2P0DJD1 1756 aa14.86□□□□□ -0.03
VPS29-208ENST00000550267 CD2APQ9Y5K6 639 aa14.86□□□□□ -0.03
VPS29-208ENST00000550267 GPR153Q6NV75 609 aa14.85□□□□□ -0.03
VPS29-208ENST00000550267 USHBP1Q8N6Y0 703 aa14.85□□□□□ -0.03
VPS29-208ENST00000550267 FBXO22Q8NEZ5 403 aa14.85□□□□□ -0.03
VPS29-208ENST00000550267 COG3Q96JB2 828 aa14.85□□□□□ -0.03
VPS29-208ENST00000550267 ADCY9O60503 1353 aa14.85□□□□□ -0.03
VPS29-208ENST00000550267 C5P01031 1676 aa14.84□□□□□ -0.03
VPS29-208ENST00000550267 HSPA6P17066 643 aa14.84□□□□□ -0.03
VPS29-208ENST00000550267 VARS2Q5ST30 1063 aaKnown RBP14.83□□□□□ -0.04
VPS29-208ENST00000550267 NBPF6Q5VWK0 638 aa14.83□□□□□ -0.04
VPS29-208ENST00000550267 NBPF4Q96M43 638 aa14.83□□□□□ -0.04
VPS29-208ENST00000550267 WWC3Q9ULE0 1092 aa14.83□□□□□ -0.04
VPS29-208ENST00000550267 CEP350Q5VT06 3117 aa14.83□□□□□ -0.04
VPS29-208ENST00000550267 FLAD1Q8NFF5 587 aa14.82□□□□□ -0.04
VPS29-208ENST00000550267 PALLDQ8WX93 1383 aa14.82□□□□□ -0.04
VPS29-208ENST00000550267 RRS1Q15050 365 aaKnown RBP14.81□□□□□ -0.04
VPS29-208ENST00000550267 RAPGEF4Q8WZA2 1011 aa14.81□□□□□ -0.04
VPS29-208ENST00000550267 PUS7Q96PZ0 661 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms