RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MON2Q7Z3U7 1717 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 GPR37L1O60883 481 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 CD46P15529 392 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 PRSS12P56730 875 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 RGL3Q3MIN7 710 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 MYOM1P52179 1685 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 ZDHHC16Q969W1 377 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 MPHOSPH9Q99550 1183 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 NRAPQ86VF7 1730 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 THEMISQ8N1K5 641 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-203ENST00000547825 TSKSQ9UJT2 592 aa7.1□□□□□ -1.27
LIMA1-203ENST00000547825 MED1Q15648 1581 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-203ENST00000547825 SMAPO00193 183 aa7.09□□□□□ -1.27
LIMA1-203ENST00000547825 GABBR2O75899 941 aa7.09□□□□□ -1.27
LIMA1-203ENST00000547825 TMEM259Q4ZIN3 620 aa7.09□□□□□ -1.27
LIMA1-203ENST00000547825 RNF123Q5XPI4 1314 aa7.09□□□□□ -1.27
LIMA1-203ENST00000547825 ANP32BQ92688 251 aaKnown RBP7.09□□□□□ -1.27
LIMA1-203ENST00000547825 SLKQ9H2G2 1235 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-203ENST00000547825 MFAP1P55081 439 aaKnown RBP7.09□□□□□ -1.27
LIMA1-203ENST00000547825 GUCA2AQ02747 115 aa7.09□□□□□ -1.27
LIMA1-203ENST00000547825 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-203ENST00000547825 USP17L8P0C7I0 530 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 TMCO4Q5TGY1 634 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 GJD4Q96KN9 370 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-203ENST00000547825 EYA1Q99502 592 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 METRNQ9UJH8 293 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 METP08581 1390 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 RPGRIP1LQ68CZ1 1315 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 ZNF335Q9H4Z2 1342 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-203ENST00000547825 PHRF1Q9P1Y6 1649 aaKnown RBP7.08□□□□□ -1.28
LIMA1-203ENST00000547825 SPTLC1O15269 473 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 WDR43Q15061 677 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIMA1-203ENST00000547825 FAM135BQ49AJ0 1406 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 ZBED9Q6R2W3 1325 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 CERKQ8TCT0 537 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 LILRB3O75022 631 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 ARSIQ5FYB1 569 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 HDGFL1Q5TGJ6 251 aa7.08□□□□□ -1.28
LIMA1-203ENST00000547825 RBM46Q8TBY0 533 aaKnown RBP7.08□□□□□ -1.28
LIMA1-203ENST00000547825 TRIM44Q96DX7 344 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-203ENST00000547825 CC2D1BQ5T0F9 858 aaKnown RBP7.07□□□□□ -1.28
LIMA1-203ENST00000547825 NUDT18Q6ZVK8 323 aa7.07□□□□□ -1.28
LIMA1-203ENST00000547825 EPS8L1Q8TE68 723 aa7.07□□□□□ -1.28
LIMA1-203ENST00000547825 FBXO41Q8TF61 875 aa7.07□□□□□ -1.28
LIMA1-203ENST00000547825 ANKRD26Q9UPS8 1709 aa7.07□□□□□ -1.28
LIMA1-203ENST00000547825 TBX22Q9Y458 520 aa7.07□□□□□ -1.28
LIMA1-203ENST00000547825 ZNF710Q8N1W2 664 aa7.07□□□□□ -1.28
LIMA1-203ENST00000547825 PLIN1O60240 522 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 PXDNQ92626 1479 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 NWD2Q9ULI1 1742 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 DCBLD2Q96PD2 775 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 BRPF3Q9ULD4 1205 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 ADGRL3Q9HAR2 1447 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 CTDSPL2Q05D32 466 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 CFAP70Q5T0N1 1121 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 NUTM1Q86Y26 1132 aa7.06□□□□□ -1.28
LIMA1-203ENST00000547825 SMG6Q86US8 1419 aaKnown RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 NUTM2BA6NNL0 878 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 NUTM2EB1AL46 878 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 VAC14Q08AM6 782 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 NUTM2DQ5VT03 806 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 ANKLE2Q86XL3 938 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 NUTM2AQ8IVF1 878 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 PLCH1Q4KWH8 1693 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 COL18A1P39060 1754 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 POTEIP0CG38 1075 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 NCLP19338 710 aaKnown RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 FRAT1Q92837 279 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-203ENST00000547825 CARD11Q9BXL7 1154 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 BECN1Q14457 450 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 PCDHGC3Q9UN70 934 aa7.05□□□□□ -1.28
LIMA1-203ENST00000547825 RBM27Q9P2N5 1060 aaKnown RBP7.04□□□□□ -1.28
LIMA1-203ENST00000547825 GPRASP1Q5JY77 1395 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 CCDC144AA2RUR9 1427 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 RBM25P49756 843 aaKnown RBP7.04□□□□□ -1.28
LIMA1-203ENST00000547825 CDCA8Q53HL2 280 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 EXOC6Q8TAG9 804 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 TRIM34Q9BYJ4 488 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 KCNA6P17658 529 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 DIXDC1Q155Q3 683 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 LRRN4Q8WUT4 740 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 RCAN3Q9UKA8 241 aa7.04□□□□□ -1.28
LIMA1-203ENST00000547825 LMO7Q8WWI1 1683 aa7.03□□□□□ -1.28
LIMA1-203ENST00000547825 ABCC11Q96J66 1382 aa7.03□□□□□ -1.28
LIMA1-203ENST00000547825 SRPK2P78362 688 aaKnown RBP7.03□□□□□ -1.28
LIMA1-203ENST00000547825 SIRT1Q96EB6 747 aa7.03□□□□□ -1.28
LIMA1-203ENST00000547825 TULP4Q9NRJ4 1543 aa7.03□□□□□ -1.28
LIMA1-203ENST00000547825 ROBO2Q9HCK4 1378 aa7.03□□□□□ -1.28
LIMA1-203ENST00000547825 LRPPRCP42704 1394 aaKnown RBP7.02□□□□□ -1.28
LIMA1-203ENST00000547825 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.02□□□□□ -1.29
LIMA1-203ENST00000547825 SLC39A7Q92504 469 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 TSC1Q92574 1164 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 PIK3C2AO00443 1686 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 PROX2Q3B8N5 592 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 NUDCQ9Y266 331 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 PNISRQ8TF01 805 aaKnown RBP7.02□□□□□ -1.29
LIMA1-203ENST00000547825 UCN2Q96RP3 112 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 TMEM134Q9H6X4 195 aa7.02□□□□□ -1.29
LIMA1-203ENST00000547825 RALGAPBQ86X10 1494 aa7.01□□□□□ -1.29
LIMA1-203ENST00000547825 RDH13Q8NBN7 331 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms