RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 ITPK1Q13572 414 aa12.64□□□□□ -0.39
YBX3-218ENST00000546298 AKAP4Q5JQC9 854 aa12.64□□□□□ -0.39
YBX3-218ENST00000546298 LINC00116Q8NCU8 138 aa12.64□□□□□ -0.39
YBX3-218ENST00000546298 PKD1L3Q7Z443 1732 aa12.64□□□□□ -0.39
YBX3-218ENST00000546298 MAP2P11137 1827 aaKnown RBP12.64□□□□□ -0.39
YBX3-218ENST00000546298 RC3H1Q5TC82 1133 aaKnown RBP12.63□□□□□ -0.39
YBX3-218ENST00000546298 NFATC2IPQ8NCF5 419 aa12.63□□□□□ -0.39
YBX3-218ENST00000546298 CD2APQ9Y5K6 639 aa12.63□□□□□ -0.39
YBX3-218ENST00000546298 LY75O60449 1722 aa12.62□□□□□ -0.39
YBX3-218ENST00000546298 HMOX1P09601 288 aa12.62□□□□□ -0.39
YBX3-218ENST00000546298 TRAPPC3LQ5T215 181 aa12.62□□□□□ -0.39
YBX3-218ENST00000546298 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
YBX3-218ENST00000546298 RTCBQ9Y3I0 505 aaKnown RBP12.62□□□□□ -0.39
YBX3-218ENST00000546298 GRIN3BO60391 1043 aa12.61□□□□□ -0.39
YBX3-218ENST00000546298 ADRA2BP18089 450 aa12.61□□□□□ -0.39
YBX3-218ENST00000546298 CNGB1Q14028 1251 aaPredicted RBP12.61□□□□□ -0.39
YBX3-218ENST00000546298 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
YBX3-218ENST00000546298 PTCD1O75127 700 aaKnown RBP12.6□□□□□ -0.39
YBX3-218ENST00000546298 NLGN2Q8NFZ4 835 aa12.6□□□□□ -0.39
YBX3-218ENST00000546298 KDM6AO15550 1401 aaPredicted RBP12.6□□□□□ -0.39
YBX3-218ENST00000546298 CNTNAP4Q9C0A0 1308 aa12.6□□□□□ -0.39
YBX3-218ENST00000546298 U2SURPO15042 1029 aaKnown RBP12.59□□□□□ -0.39
YBX3-218ENST00000546298 RNMTO43148 476 aaKnown RBP12.59□□□□□ -0.39
YBX3-218ENST00000546298 RPS6KA4O75676 772 aa12.59□□□□□ -0.39
YBX3-218ENST00000546298 AMIGO3Q86WK7 504 aa12.59□□□□□ -0.39
YBX3-218ENST00000546298 NLGN1Q8N2Q7 840 aa12.59□□□□□ -0.39
YBX3-218ENST00000546298 SLC4A9Q96Q91 983 aa12.59□□□□□ -0.39
YBX3-218ENST00000546298 SLC52A2Q9HAB3 445 aa12.59□□□□□ -0.39
YBX3-218ENST00000546298 RFC4P35249 363 aa12.58□□□□□ -0.4
YBX3-218ENST00000546298 QSER1Q2KHR3 1735 aa12.58□□□□□ -0.4
YBX3-218ENST00000546298 MTHFSDQ2M296 383 aaKnown RBP12.58□□□□□ -0.4
YBX3-218ENST00000546298 SMIM5Q71RC9 77 aa12.58□□□□□ -0.4
YBX3-218ENST00000546298 NUDCQ9Y266 331 aa12.58□□□□□ -0.4
YBX3-218ENST00000546298 TOGARAM1Q9Y4F4 1720 aa12.57□□□□□ -0.4
YBX3-218ENST00000546298 GAS2L2Q8NHY3 880 aa12.57□□□□□ -0.4
YBX3-218ENST00000546298 LGR6Q9HBX8 967 aa12.57□□□□□ -0.4
YBX3-218ENST00000546298 MMP10P09238 476 aa12.56□□□□□ -0.4
YBX3-218ENST00000546298 ARHGEF1Q92888 912 aaKnown RBP12.56□□□□□ -0.4
YBX3-218ENST00000546298 C4BP0C0L5 1744 aa12.56□□□□□ -0.4
YBX3-218ENST00000546298 CRKLP46109 303 aaKnown RBP12.55□□□□□ -0.4
YBX3-218ENST00000546298 ZNF784Q8NCA9 323 aaPredicted RBP12.55□□□□□ -0.4
YBX3-218ENST00000546298 C5P01031 1676 aa12.54□□□□□ -0.4
YBX3-218ENST00000546298 GNAT3A8MTJ3 354 aa12.54□□□□□ -0.4
YBX3-218ENST00000546298 YBX3P16989 372 aaKnown RBP eCLIP12.54□□□□□ -0.49e-7■□□□□ 11.3
YBX3-218ENST00000546298 ITGB4P16144 1822 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 GYS1P13807 737 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 PPP2R1AP30153 589 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 TEFQ10587 303 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 SLC39A6Q13433 755 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 DNAJC10Q8IXB1 793 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 TTC5Q8N0Z6 440 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 CCDC87Q9NVE4 849 aa12.53□□□□□ -0.4
YBX3-218ENST00000546298 U2AF1L5P0DN76 240 aaPredicted RBP12.52□□□□□ -0.41
YBX3-218ENST00000546298 PRKAR2BP31323 418 aa12.52□□□□□ -0.41
YBX3-218ENST00000546298 TGFB2P61812 414 aa12.52□□□□□ -0.41
YBX3-218ENST00000546298 U2AF1Q01081 240 aaKnown RBP eCLIP12.52□□□□□ -0.41
YBX3-218ENST00000546298 VSIG10Q8N0Z9 540 aa12.52□□□□□ -0.41
YBX3-218ENST00000546298 PARP3Q9Y6F1 533 aa12.52□□□□□ -0.41
YBX3-218ENST00000546298 ZPR1O75312 459 aa12.51□□□□□ -0.41
YBX3-218ENST00000546298 FCHSD2O94868 740 aa12.51□□□□□ -0.41
YBX3-218ENST00000546298 INTS5Q6P9B9 1019 aaKnown RBP12.51□□□□□ -0.41
YBX3-218ENST00000546298 TEX13AQ9BXU3 409 aaPredicted RBP12.51□□□□□ -0.41
YBX3-218ENST00000546298 COL24A1Q17RW2 1714 aa12.51□□□□□ -0.41
YBX3-218ENST00000546298 STARD3NLO95772 234 aa12.5□□□□□ -0.41
YBX3-218ENST00000546298 CYP19A1P11511 503 aaPredicted RBP12.5□□□□□ -0.41
YBX3-218ENST00000546298 IL17REQ8NFR9 667 aa12.5□□□□□ -0.41
YBX3-218ENST00000546298 USP42Q9H9J4 1324 aaKnown RBP12.5□□□□□ -0.41
YBX3-218ENST00000546298 COL3A1P02461 1466 aaPredicted RBP12.5□□□□□ -0.41
YBX3-218ENST00000546298 TUBGCP6Q96RT7 1819 aa12.49□□□□□ -0.41
YBX3-218ENST00000546298 NEFMP07197 916 aa12.49□□□□□ -0.41
YBX3-218ENST00000546298 PHACTR3Q96KR7 559 aa12.49□□□□□ -0.41
YBX3-218ENST00000546298 RSPH6AQ9H0K4 717 aa12.49□□□□□ -0.41
YBX3-218ENST00000546298 TAF1LQ8IZX4 1826 aa12.48□□□□□ -0.41
YBX3-218ENST00000546298 SOS1Q07889 1333 aaPredicted RBP12.48□□□□□ -0.41
YBX3-218ENST00000546298 A0A087WZG4 1122 aa12.48□□□□□ -0.41
YBX3-218ENST00000546298 ZNF790Q6PG37 636 aa12.48□□□□□ -0.41
YBX3-218ENST00000546298 RTF1Q92541 710 aaKnown RBP12.48□□□□□ -0.41
YBX3-218ENST00000546298 SRP68Q9UHB9 627 aaKnown RBP12.48□□□□□ -0.41
YBX3-218ENST00000546298 MRC1P22897 1456 aa12.47□□□□□ -0.41
YBX3-218ENST00000546298 FKBP8Q14318 412 aa12.47□□□□□ -0.41
YBX3-218ENST00000546298 NPM2Q86SE8 214 aaKnown RBP12.47□□□□□ -0.41
YBX3-218ENST00000546298 ZNF496Q96IT1 587 aaPredicted RBP12.47□□□□□ -0.41
YBX3-218ENST00000546298 FMNL2Q96PY5 1086 aa12.47□□□□□ -0.41
YBX3-218ENST00000546298 NARFQ9UHQ1 456 aa12.47□□□□□ -0.41
YBX3-218ENST00000546298 WWC3Q9ULE0 1092 aa12.47□□□□□ -0.41
YBX3-218ENST00000546298 ZNF831Q5JPB2 1677 aa12.47□□□□□ -0.41
YBX3-218ENST00000546298 UBR3Q6ZT12 1888 aa12.46□□□□□ -0.41
YBX3-218ENST00000546298 A0A0G2JLW4 131 aa12.46□□□□□ -0.41
YBX3-218ENST00000546298 HTATSF1O43719 755 aaKnown RBP12.46□□□□□ -0.41
YBX3-218ENST00000546298 CANXP27824 592 aaKnown RBP12.46□□□□□ -0.41
YBX3-218ENST00000546298 USPL1Q5W0Q7 1092 aa12.46□□□□□ -0.41
YBX3-218ENST00000546298 ZBTB1Q9Y2K1 713 aa12.46□□□□□ -0.41
YBX3-218ENST00000546298 CEMIPQ8WUJ3 1361 aa12.45□□□□□ -0.42
YBX3-218ENST00000546298 BTBD11A6QL63 1104 aa12.45□□□□□ -0.42
YBX3-218ENST00000546298 DPEP1P16444 411 aa12.45□□□□□ -0.42
YBX3-218ENST00000546298 TM4SF1P30408 202 aa12.45□□□□□ -0.42
YBX3-218ENST00000546298 PNNQ9H307 717 aaKnown RBP12.45□□□□□ -0.42
YBX3-218ENST00000546298 BCS1LQ9Y276 419 aa12.45□□□□□ -0.42
YBX3-218ENST00000546298 HEG1Q9ULI3 1381 aa12.44□□□□□ -0.42
YBX3-218ENST00000546298 GIGYF1O75420 1035 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms