RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ZMYM4Q5VZL5 1548 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 ITSN2Q9NZM3 1697 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.6□□□□□ -0.71
VPS13D-212ENST00000543766 NEBLO76041 1014 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 UBAP1Q9NZ09 502 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 NUP153P49790 1475 aaKnown RBP10.6□□□□□ -0.71
VPS13D-212ENST00000543766 ATP6V1AP38606 617 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 MYLK4Q86YV6 388 aaPredicted RBP10.6□□□□□ -0.71
VPS13D-212ENST00000543766 OGFOD1Q8N543 542 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 TMEM165Q9HC07 324 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 KIF7Q2M1P5 1343 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 PPFIA3O75145 1194 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 RRM1P23921 792 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 CCDC47Q96A33 483 aaKnown RBP10.59□□□□□ -0.71
VPS13D-212ENST00000543766 TEX14Q8IWB6 1497 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 COQ9O75208 318 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 C11orf96Q7Z7L8 435 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 CEP89Q96ST8 783 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 CDK13Q14004 1512 aaKnown RBP10.59□□□□□ -0.71
VPS13D-212ENST00000543766 DNMT1P26358 1616 aaKnown RBP10.59□□□□□ -0.71
VPS13D-212ENST00000543766 RPUSD2Q8IZ73 545 aaKnown RBP10.59□□□□□ -0.71
VPS13D-212ENST00000543766 RSPH1Q8WYR4 309 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 MRFAP1L1Q96HT8 127 aa10.59□□□□□ -0.71
VPS13D-212ENST00000543766 RANBP17Q9H2T7 1088 aaKnown RBP10.59□□□□□ -0.71
VPS13D-212ENST00000543766 GUCY2CP25092 1073 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 GYS2P54840 703 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 KTN1Q86UP2 1357 aaKnown RBP10.58□□□□□ -0.72
VPS13D-212ENST00000543766 BDNFP23560 247 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 HELBQ8NG08 1087 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-212ENST00000543766 NEUROD6Q96NK8 337 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 MAP3K20Q9NYL2 800 aaKnown RBP10.58□□□□□ -0.72
VPS13D-212ENST00000543766 DMRT2Q9Y5R5 561 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 ABCC2Q92887 1545 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 CROCC2H7BZ55 1655 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 OFD1O75665 1012 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 DZIP1Q86YF9 867 aaKnown RBP10.58□□□□□ -0.72
VPS13D-212ENST00000543766 TSPYL2Q9H2G4 693 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-212ENST00000543766 MRFAP1Q9Y605 127 aa10.58□□□□□ -0.72
VPS13D-212ENST00000543766 SKILP12757 684 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 JMYQ8N9B5 988 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 ANKRD20A12PQ8NF67 263 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 GPATCH3Q96I76 525 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 FBXO9Q9UK97 447 aaPredicted RBP10.57□□□□□ -0.72
VPS13D-212ENST00000543766 AKNAD1Q5T1N1 836 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 THOC1Q96FV9 657 aaKnown RBP10.57□□□□□ -0.72
VPS13D-212ENST00000543766 MKRN1Q9UHC7 482 aaKnown RBP10.57□□□□□ -0.72
VPS13D-212ENST00000543766 ZSCAN26Q16670 478 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 SAPCD2Q86UD0 394 aa10.57□□□□□ -0.72
VPS13D-212ENST00000543766 KLHL33A6NCF5 533 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 U2SURPO15042 1029 aaKnown RBP10.56□□□□□ -0.72
VPS13D-212ENST00000543766 ARMC9Q7Z3E5 817 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 BRMS1Q9HCU9 246 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 MED4Q9NPJ6 270 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 INSRP06213 1382 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 ADGBQ8N7X0 1667 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 NBPF7P0C2Y1 421 aaPredicted RBP10.56□□□□□ -0.72
VPS13D-212ENST00000543766 ATP2B3Q16720 1220 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 TTLL5Q6EMB2 1281 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 MAGEC2Q9UBF1 373 aaPredicted RBP10.56□□□□□ -0.72
VPS13D-212ENST00000543766 ABCA9Q8IUA7 1624 aa10.56□□□□□ -0.72
VPS13D-212ENST00000543766 IGHDP01880 384 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 DUSP9Q99956 384 aaKnown RBP10.55□□□□□ -0.72
VPS13D-212ENST00000543766 RWDD1Q9H446 243 aaPredicted RBP10.55□□□□□ -0.72
VPS13D-212ENST00000543766 RCAN3Q9UKA8 241 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 FCHSD2O94868 740 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 FKBP15Q5T1M5 1219 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 NAIF1Q69YI7 327 aaPredicted RBP10.55□□□□□ -0.72
VPS13D-212ENST00000543766 KIF5CO60282 957 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 JAKMIP3Q5VZ66 844 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 CWC15Q9P013 229 aaKnown RBP10.55□□□□□ -0.72
VPS13D-212ENST00000543766 JRKLQ9Y4A0 524 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 FRMPD1Q5SYB0 1578 aa10.55□□□□□ -0.72
VPS13D-212ENST00000543766 C10orf62Q5T681 223 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-212ENST00000543766 KDM5CP41229 1560 aa10.54□□□□□ -0.72
VPS13D-212ENST00000543766 CCDC85AQ96PX6 553 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-212ENST00000543766 MBD5Q9P267 1494 aa10.54□□□□□ -0.72
VPS13D-212ENST00000543766 ENOX2Q16206 610 aaKnown RBP10.54□□□□□ -0.72
VPS13D-212ENST00000543766 TSC1Q92574 1164 aa10.54□□□□□ -0.72
VPS13D-212ENST00000543766 MPHOSPH6Q99547 160 aaKnown RBP10.54□□□□□ -0.72
VPS13D-212ENST00000543766 KIF3CO14782 793 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 CSPG5O95196 566 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 CDCA7Q9BWT1 371 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-212ENST00000543766 ATP1B4Q9UN42 357 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-212ENST00000543766 BECN1Q14457 450 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 TOMM20Q15388 145 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 PDCL2Q8N4E4 241 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 KDM6BO15054 1643 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 HMMRO75330 724 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 XPCQ01831 940 aaPredicted RBP10.53□□□□□ -0.72
VPS13D-212ENST00000543766 ZCCHC8Q6NZY4 707 aaKnown RBP10.53□□□□□ -0.72
VPS13D-212ENST00000543766 IP6K2Q9UHH9 426 aa10.53□□□□□ -0.72
VPS13D-212ENST00000543766 ROCK1Q13464 1354 aa10.52□□□□□ -0.72
VPS13D-212ENST00000543766 KINO60870 393 aaKnown RBP10.52□□□□□ -0.72
VPS13D-212ENST00000543766 PDE3BQ13370 1112 aa10.52□□□□□ -0.73
VPS13D-212ENST00000543766 UVSSAQ2YD98 709 aa10.52□□□□□ -0.73
VPS13D-212ENST00000543766 NRBP1Q9UHY1 535 aa10.52□□□□□ -0.73
VPS13D-212ENST00000543766 HMGB1P1B2RPK0 211 aaPredicted RBP10.52□□□□□ -0.73
VPS13D-212ENST00000543766 MRE11P49959 708 aa10.52□□□□□ -0.73
VPS13D-212ENST00000543766 SH3BGRP55822 239 aaPredicted RBP10.52□□□□□ -0.73
VPS13D-212ENST00000543766 TMEM110Q86TL2 294 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms