RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 DIAPH1O60610 1272 aaKnown RBP28.37■■■□□ 2.13
CHFR-217ENST00000540537 ATP6V1AP38606 617 aa28.37■■■□□ 2.13
CHFR-217ENST00000540537 ZNF831Q5JPB2 1677 aa28.36■■■□□ 2.13
CHFR-217ENST00000540537 CABP4P57796 275 aa28.36■■■□□ 2.13
CHFR-217ENST00000540537 ITPK1Q13572 414 aa28.36■■■□□ 2.13
CHFR-217ENST00000540537 COL3A1P02461 1466 aaPredicted RBP28.34■■■□□ 2.13
CHFR-217ENST00000540537 SCN11AQ9UI33 1791 aa28.34■■■□□ 2.13
CHFR-217ENST00000540537 HMOX1P09601 288 aa28.33■■■□□ 2.13
CHFR-217ENST00000540537 SSFA2P28290 1259 aa28.33■■■□□ 2.13
CHFR-217ENST00000540537 AMIGO3Q86WK7 504 aa28.33■■■□□ 2.13
CHFR-217ENST00000540537 CNGB1Q14028 1251 aaPredicted RBP28.32■■■□□ 2.12
CHFR-217ENST00000540537 AKAP4Q5JQC9 854 aa28.32■■■□□ 2.12
CHFR-217ENST00000540537 MSL1Q68DK7 614 aa28.32■■■□□ 2.12
CHFR-217ENST00000540537 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.31■■■□□ 2.12
CHFR-217ENST00000540537 YY1P25490 414 aa28.31■■■□□ 2.12
CHFR-217ENST00000540537 PHF14O94880 888 aa28.3■■■□□ 2.12
CHFR-217ENST00000540537 KLHL34Q8N239 644 aa28.3■■■□□ 2.12
CHFR-217ENST00000540537 RBM42Q9BTD8 480 aaKnown RBP28.3■■■□□ 2.12
CHFR-217ENST00000540537 SLC4A9Q96Q91 983 aa28.29■■■□□ 2.12
CHFR-217ENST00000540537 GNPATO15228 680 aa28.28■■■□□ 2.12
CHFR-217ENST00000540537 NFATC2IPQ8NCF5 419 aa28.28■■■□□ 2.12
CHFR-217ENST00000540537 COL5A3P25940 1745 aaPredicted RBP28.28■■■□□ 2.12
CHFR-217ENST00000540537 SMIM5Q71RC9 77 aa28.26■■■□□ 2.11
CHFR-217ENST00000540537 VIRMAQ69YN4 1812 aaKnown RBP28.25■■■□□ 2.11
CHFR-217ENST00000540537 CNTNAP4Q9C0A0 1308 aa28.24■■■□□ 2.11
CHFR-217ENST00000540537 MRC1P22897 1456 aa28.24■■■□□ 2.11
CHFR-217ENST00000540537 MTHFSDQ2M296 383 aaKnown RBP28.24■■■□□ 2.11
CHFR-217ENST00000540537 RC3H1Q5TC82 1133 aaKnown RBP28.24■■■□□ 2.11
CHFR-217ENST00000540537 UTRNP46939 3433 aa28.24■■■□□ 2.11
CHFR-217ENST00000540537 NLGN2Q8NFZ4 835 aa28.23■■■□□ 2.11
CHFR-217ENST00000540537 SLC52A2Q9HAB3 445 aa28.23■■■□□ 2.11
CHFR-217ENST00000540537 ADAMTS7Q9UKP4 1686 aa28.23■■■□□ 2.11
CHFR-217ENST00000540537 U2SURPO15042 1029 aaKnown RBP28.22■■■□□ 2.11
CHFR-217ENST00000540537 RNMTO43148 476 aaKnown RBP28.22■■■□□ 2.11
CHFR-217ENST00000540537 LGR6Q9HBX8 967 aa28.22■■■□□ 2.11
CHFR-217ENST00000540537 RTCBQ9Y3I0 505 aaKnown RBP28.22■■■□□ 2.11
CHFR-217ENST00000540537 CICQ96RK0 1608 aaPredicted RBP28.21■■■□□ 2.11
CHFR-217ENST00000540537 PTCD1O75127 700 aaKnown RBP28.21■■■□□ 2.11
CHFR-217ENST00000540537 CFAP53Q96M91 514 aa28.21■■■□□ 2.11
CHFR-217ENST00000540537 CHD4Q14839 1912 aa28.21■■■□□ 2.11
CHFR-217ENST00000540537 GPR162Q16538 588 aa28.2■■■□□ 2.1
CHFR-217ENST00000540537 MYH14Q7Z406 1995 aaKnown RBP28.2■■■□□ 2.1
CHFR-217ENST00000540537 ADRA2BP18089 450 aa28.19■■■□□ 2.1
CHFR-217ENST00000540537 CD2APQ9Y5K6 639 aa28.19■■■□□ 2.1
CHFR-217ENST00000540537 TRAPPC3LQ5T215 181 aa28.18■■■□□ 2.1
CHFR-217ENST00000540537 TJP1Q07157 1748 aa28.18■■■□□ 2.1
CHFR-217ENST00000540537 RPS6KA4O75676 772 aa28.17■■■□□ 2.1
CHFR-217ENST00000540537 PPP2R1AP30153 589 aa28.16■■■□□ 2.1
CHFR-217ENST00000540537 GAS2L2Q8NHY3 880 aa28.16■■■□□ 2.1
CHFR-217ENST00000540537 GOLGB1Q14789 3259 aaKnown RBP28.14■■■□□ 2.09
CHFR-217ENST00000540537 CRKLP46109 303 aaKnown RBP28.13■■■□□ 2.09
CHFR-217ENST00000540537 PELP1Q8IZL8 1130 aaKnown RBP28.13■■■□□ 2.09
CHFR-217ENST00000540537 ARHGEF1Q92888 912 aaKnown RBP28.13■■■□□ 2.09
CHFR-217ENST00000540537 NUDCQ9Y266 331 aa28.13■■■□□ 2.09
CHFR-217ENST00000540537 C4AP0C0L4 1744 aa28.11■■■□□ 2.09
CHFR-217ENST00000540537 KCPQ6ZWJ8 1503 aa28.11■■■□□ 2.09
CHFR-217ENST00000540537 GNAT3A8MTJ3 354 aa28.1■■■□□ 2.09
CHFR-217ENST00000540537 RFC4P35249 363 aa28.1■■■□□ 2.09
CHFR-217ENST00000540537 SLC39A6Q13433 755 aa28.1■■■□□ 2.09
CHFR-217ENST00000540537 NLGN1Q8N2Q7 840 aa28.1■■■□□ 2.09
CHFR-217ENST00000540537 RSPH6AQ9H0K4 717 aa28.1■■■□□ 2.09
CHFR-217ENST00000540537 MMP10P09238 476 aa28.09■■■□□ 2.09
CHFR-217ENST00000540537 PRKAR2BP31323 418 aa28.09■■■□□ 2.09
CHFR-217ENST00000540537 DNAJC10Q8IXB1 793 aa28.08■■■□□ 2.09
CHFR-217ENST00000540537 UBR2Q8IWV8 1755 aa28.08■■■□□ 2.09
CHFR-217ENST00000540537 GRIN3BO60391 1043 aa28.07■■■□□ 2.08
CHFR-217ENST00000540537 GYS1P13807 737 aa28.07■■■□□ 2.08
CHFR-217ENST00000540537 YBX3P16989 372 aaKnown RBP eCLIP28.07■■■□□ 2.08
CHFR-217ENST00000540537 INTS5Q6P9B9 1019 aaKnown RBP28.06■■■□□ 2.08
CHFR-217ENST00000540537 IL17REQ8NFR9 667 aa28.06■■■□□ 2.08
CHFR-217ENST00000540537 PHACTR3Q96KR7 559 aa28.06■■■□□ 2.08
CHFR-217ENST00000540537 SIPA1L3O60292 1781 aaPredicted RBP28.05■■■□□ 2.08
CHFR-217ENST00000540537 U2AF1L5P0DN76 240 aaPredicted RBP28.05■■■□□ 2.08
CHFR-217ENST00000540537 U2AF1Q01081 240 aaKnown RBP eCLIP28.05■■■□□ 2.08
CHFR-217ENST00000540537 TEFQ10587 303 aa28.05■■■□□ 2.08
CHFR-217ENST00000540537 VSIG10Q8N0Z9 540 aa28.05■■■□□ 2.08
CHFR-217ENST00000540537 CCDC87Q9NVE4 849 aa28.05■■■□□ 2.08
CHFR-217ENST00000540537 KIF13BQ9NQT8 1826 aa28.04■■■□□ 2.08
CHFR-217ENST00000540537 FCHSD2O94868 740 aa28.03■■■□□ 2.08
CHFR-217ENST00000540537 CYP19A1P11511 503 aaPredicted RBP28.03■■■□□ 2.08
CHFR-217ENST00000540537 CEMIPQ8WUJ3 1361 aa28.02■■■□□ 2.08
CHFR-217ENST00000540537 USP42Q9H9J4 1324 aaKnown RBP28.02■■■□□ 2.08
CHFR-217ENST00000540537 TTC5Q8N0Z6 440 aa28.02■■■□□ 2.08
CHFR-217ENST00000540537 ZNF784Q8NCA9 323 aaPredicted RBP28.02■■■□□ 2.08
CHFR-217ENST00000540537 SOS1Q07889 1333 aaPredicted RBP28■■■□□ 2.07
CHFR-217ENST00000540537 SRP68Q9UHB9 627 aaKnown RBP27.99■■■□□ 2.07
CHFR-217ENST00000540537 C10orf71Q711Q0 1435 aa27.99■■■□□ 2.07
CHFR-217ENST00000540537 ZNF790Q6PG37 636 aa27.98■■■□□ 2.07
CHFR-217ENST00000540537 PARP3Q9Y6F1 533 aa27.98■■■□□ 2.07
CHFR-217ENST00000540537 ZNF496Q96IT1 587 aaPredicted RBP27.96■■■□□ 2.07
CHFR-217ENST00000540537 ZBTB1Q9Y2K1 713 aa27.96■■■□□ 2.07
CHFR-217ENST00000540537 KIAA1551Q9HCM1 1747 aa27.95■■■□□ 2.07
CHFR-217ENST00000540537 TGFB2P61812 414 aa27.95■■■□□ 2.06
CHFR-217ENST00000540537 FKBP8Q14318 412 aa27.95■■■□□ 2.06
CHFR-217ENST00000540537 COL15A1P39059 1388 aa27.95■■■□□ 2.06
CHFR-217ENST00000540537 HEG1Q9ULI3 1381 aa27.95■■■□□ 2.06
CHFR-217ENST00000540537 PXDNLA1KZ92 1463 aa27.95■■■□□ 2.06
CHFR-217ENST00000540537 ZPR1O75312 459 aa27.94■■■□□ 2.06
CHFR-217ENST00000540537 STARD3NLO95772 234 aa27.94■■■□□ 2.06
CHFR-217ENST00000540537 RTF1Q92541 710 aaKnown RBP27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms