RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 HSP90AB1P08238 724 aaKnown RBP13.86□□□□□ -0.19
LEMD3-202ENST00000539442 GNAI1P63096 354 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 BARGINQ6ZT62 677 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 MCM10Q7L590 875 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 IFNL2Q8IZJ0 200 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 ZCRB1Q8TBF4 217 aaKnown RBP13.86□□□□□ -0.19
LEMD3-202ENST00000539442 CFAP44Q96MT7 982 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 USP35Q9P2H5 1018 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 USP21Q9UK80 565 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 ZNF853P0CG23 659 aa13.85□□□□□ -0.19
LEMD3-202ENST00000539442 PHKG2P15735 406 aa13.85□□□□□ -0.19
LEMD3-202ENST00000539442 DCTN1Q14203 1278 aa13.85□□□□□ -0.19
LEMD3-202ENST00000539442 THUMPD2Q9BTF0 503 aaKnown RBP13.85□□□□□ -0.19
LEMD3-202ENST00000539442 WNK3Q9BYP7 1800 aa13.85□□□□□ -0.19
LEMD3-202ENST00000539442 PRR29P0C7W0 189 aa13.84□□□□□ -0.19
LEMD3-202ENST00000539442 IL17REQ8NFR9 667 aa13.84□□□□□ -0.19
LEMD3-202ENST00000539442 BABAM1Q9NWV8 329 aa13.84□□□□□ -0.19
LEMD3-202ENST00000539442 ADAMTS7Q9UKP4 1686 aa13.84□□□□□ -0.19
LEMD3-202ENST00000539442 AFF2P51816 1311 aa13.84□□□□□ -0.19
LEMD3-202ENST00000539442 FANCIQ9NVI1 1328 aa13.84□□□□□ -0.19
LEMD3-202ENST00000539442 TNS2Q63HR2 1409 aa13.83□□□□□ -0.2
LEMD3-202ENST00000539442 CYP27B1O15528 508 aa13.83□□□□□ -0.2
LEMD3-202ENST00000539442 RNMTO43148 476 aaKnown RBP13.83□□□□□ -0.2
LEMD3-202ENST00000539442 DCAF5Q96JK2 942 aa13.83□□□□□ -0.2
LEMD3-202ENST00000539442 CCDC9Q9Y3X0 531 aaKnown RBP13.83□□□□□ -0.2
LEMD3-202ENST00000539442 ATRNO75882 1429 aa13.82□□□□□ -0.2
LEMD3-202ENST00000539442 CHL1O00533 1208 aa13.82□□□□□ -0.2
LEMD3-202ENST00000539442 CT47B1P0C2W7 299 aaPredicted RBP13.82□□□□□ -0.2
LEMD3-202ENST00000539442 NKX1-1Q15270 411 aaPredicted RBP13.81□□□□□ -0.2
LEMD3-202ENST00000539442 MPRIPQ6WCQ1 1025 aa13.81□□□□□ -0.2
LEMD3-202ENST00000539442 TRPC5Q9UL62 973 aaPredicted RBP13.81□□□□□ -0.2
LEMD3-202ENST00000539442 KDM6AO15550 1401 aaPredicted RBP13.81□□□□□ -0.2
LEMD3-202ENST00000539442 MRC1P22897 1456 aa13.8□□□□□ -0.2
LEMD3-202ENST00000539442 EXOC5O00471 708 aa13.8□□□□□ -0.2
LEMD3-202ENST00000539442 TEFQ10587 303 aa13.8□□□□□ -0.2
LEMD3-202ENST00000539442 TAF7Q15545 349 aaPredicted RBP13.8□□□□□ -0.2
LEMD3-202ENST00000539442 TSR2Q969E8 191 aaKnown RBP13.8□□□□□ -0.2
LEMD3-202ENST00000539442 LGR6Q9HBX8 967 aa13.8□□□□□ -0.2
LEMD3-202ENST00000539442 MBIPQ9NS73 344 aa13.8□□□□□ -0.2
LEMD3-202ENST00000539442 LAS1LQ9Y4W2 734 aaKnown RBP13.8□□□□□ -0.2
LEMD3-202ENST00000539442 SHANK3Q9BYB0 1731 aa13.8□□□□□ -0.2
LEMD3-202ENST00000539442 GJD4Q96KN9 370 aaPredicted RBP13.79□□□□□ -0.2
LEMD3-202ENST00000539442 RCAN3Q9UKA8 241 aa13.79□□□□□ -0.2
LEMD3-202ENST00000539442 DDB1Q16531 1140 aa13.78□□□□□ -0.2
LEMD3-202ENST00000539442 TSPYL4Q9UJ04 414 aa13.78□□□□□ -0.2
LEMD3-202ENST00000539442 SCN11AQ9UI33 1791 aa13.78□□□□□ -0.2
LEMD3-202ENST00000539442 ERVV-2B6SEH9 535 aa13.77□□□□□ -0.21
LEMD3-202ENST00000539442 GLI3P10071 1580 aa13.77□□□□□ -0.21
LEMD3-202ENST00000539442 EXOSC9Q06265 439 aaKnown RBP13.77□□□□□ -0.21
LEMD3-202ENST00000539442 ZNF772Q68DY9 489 aaPredicted RBP13.77□□□□□ -0.21
LEMD3-202ENST00000539442 DDX54Q8TDD1 881 aaKnown RBP13.77□□□□□ -0.21
LEMD3-202ENST00000539442 ZNF428Q96B54 188 aa13.77□□□□□ -0.21
LEMD3-202ENST00000539442 SLC52A2Q9HAB3 445 aa13.77□□□□□ -0.21
LEMD3-202ENST00000539442 THSD7AQ9UPZ6 1657 aa13.76□□□□□ -0.21
LEMD3-202ENST00000539442 SOS1Q07889 1333 aaPredicted RBP13.76□□□□□ -0.21
LEMD3-202ENST00000539442 FAM98CQ17RN3 349 aaKnown RBP13.76□□□□□ -0.21
LEMD3-202ENST00000539442 RNF123Q5XPI4 1314 aa13.75□□□□□ -0.21
LEMD3-202ENST00000539442 ONECUT3O60422 494 aaPredicted RBP13.75□□□□□ -0.21
LEMD3-202ENST00000539442 SIPA1L3O60292 1781 aaPredicted RBP13.75□□□□□ -0.21
LEMD3-202ENST00000539442 VIRMAQ69YN4 1812 aaKnown RBP13.74□□□□□ -0.21
LEMD3-202ENST00000539442 BTBD11A6QL63 1104 aa13.74□□□□□ -0.21
LEMD3-202ENST00000539442 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
LEMD3-202ENST00000539442 CABP4P57796 275 aa13.74□□□□□ -0.21
LEMD3-202ENST00000539442 QTRT2Q9H974 415 aaKnown RBP13.74□□□□□ -0.21
LEMD3-202ENST00000539442 SUPT16HQ9Y5B9 1047 aaKnown RBP13.74□□□□□ -0.21
LEMD3-202ENST00000539442 KDM3BQ7LBC6 1761 aa13.73□□□□□ -0.21
LEMD3-202ENST00000539442 TWISTNBQ3B726 338 aaPredicted RBP13.73□□□□□ -0.21
LEMD3-202ENST00000539442 MIS18AQ9NYP9 233 aa13.73□□□□□ -0.21
LEMD3-202ENST00000539442 VAMP4O75379 141 aa13.72□□□□□ -0.21
LEMD3-202ENST00000539442 RARSP54136 660 aaKnown RBP13.72□□□□□ -0.21
LEMD3-202ENST00000539442 ALDH1L2Q3SY69 923 aa13.72□□□□□ -0.21
LEMD3-202ENST00000539442 NFATC2IPQ8NCF5 419 aa13.72□□□□□ -0.21
LEMD3-202ENST00000539442 TOGARAM1Q9Y4F4 1720 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 A0A0G2JS52 829 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 HOXB7P09629 217 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 EIF4A1P60842 406 aaKnown RBP13.71□□□□□ -0.21
LEMD3-202ENST00000539442 MYT1Q01538 1121 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 TSPYL6Q8N831 410 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 MARCH10Q8NA82 808 aaPredicted RBP13.71□□□□□ -0.21
LEMD3-202ENST00000539442 C8orf58Q8NAV2 365 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 CHMP4AQ9BY43 222 aa13.71□□□□□ -0.21
LEMD3-202ENST00000539442 FARP1Q9Y4F1 1045 aaPredicted RBP13.71□□□□□ -0.21
LEMD3-202ENST00000539442 RRP1P56182 461 aaKnown RBP13.7□□□□□ -0.22
LEMD3-202ENST00000539442 RBM6P78332 1123 aaKnown RBP13.7□□□□□ -0.22
LEMD3-202ENST00000539442 ZNF790Q6PG37 636 aa13.7□□□□□ -0.22
LEMD3-202ENST00000539442 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.7□□□□□ -0.22
LEMD3-202ENST00000539442 TMOD3Q9NYL9 352 aa13.7□□□□□ -0.22
LEMD3-202ENST00000539442 BCL9O00512 1426 aa13.7□□□□□ -0.22
LEMD3-202ENST00000539442 HEG1Q9ULI3 1381 aa13.7□□□□□ -0.22
LEMD3-202ENST00000539442 POTEB2H3BUK9 544 aa13.69□□□□□ -0.22
LEMD3-202ENST00000539442 NEFLP07196 543 aa13.69□□□□□ -0.22
LEMD3-202ENST00000539442 TTC5Q8N0Z6 440 aa13.69□□□□□ -0.22
LEMD3-202ENST00000539442 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
LEMD3-202ENST00000539442 PAPPAQ13219 1627 aa13.68□□□□□ -0.22
LEMD3-202ENST00000539442 ELL2O00472 640 aaPredicted RBP13.68□□□□□ -0.22
LEMD3-202ENST00000539442 BRPF1P55201 1214 aaPredicted RBP13.68□□□□□ -0.22
LEMD3-202ENST00000539442 KRT24Q2M2I5 525 aa13.68□□□□□ -0.22
LEMD3-202ENST00000539442 SEPT12Q8IYM1 358 aa13.68□□□□□ -0.22
LEMD3-202ENST00000539442 ZNF579Q8NAF0 562 aaKnown RBP13.68□□□□□ -0.22
LEMD3-202ENST00000539442 SMC4Q9NTJ3 1288 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms