RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ITPK1Q13572 414 aa19.88■□□□□ 0.77
USP28-204ENST00000537642 COL23A1Q86Y22 540 aaPredicted RBP19.88■□□□□ 0.77
USP28-204ENST00000537642 LINC00116Q8NCU8 138 aa19.88■□□□□ 0.77
USP28-204ENST00000537642 ATP6V1AP38606 617 aa19.87■□□□□ 0.77
USP28-204ENST00000537642 NFATC2IPQ8NCF5 419 aa19.87■□□□□ 0.77
USP28-204ENST00000537642 LGR6Q9HBX8 967 aa19.87■□□□□ 0.77
USP28-204ENST00000537642 UBR3Q6ZT12 1888 aa19.87■□□□□ 0.77
USP28-204ENST00000537642 SLC4A9Q96Q91 983 aa19.86■□□□□ 0.77
USP28-204ENST00000537642 ZNF831Q5JPB2 1677 aa19.86■□□□□ 0.77
USP28-204ENST00000537642 ADAMTS7Q9UKP4 1686 aa19.86■□□□□ 0.77
USP28-204ENST00000537642 RNMTO43148 476 aaKnown RBP19.85■□□□□ 0.77
USP28-204ENST00000537642 DDX10Q13206 875 aaKnown RBP19.85■□□□□ 0.77
USP28-204ENST00000537642 AMIGO3Q86WK7 504 aa19.85■□□□□ 0.77
USP28-204ENST00000537642 AK7Q96M32 723 aa19.85■□□□□ 0.77
USP28-204ENST00000537642 RBM42Q9BTD8 480 aaKnown RBP19.85■□□□□ 0.77
USP28-204ENST00000537642 MRC1P22897 1456 aa19.85■□□□□ 0.77
USP28-204ENST00000537642 RSPH6AQ9H0K4 717 aa19.84■□□□□ 0.77
USP28-204ENST00000537642 NUDCQ9Y266 331 aa19.84■□□□□ 0.77
USP28-204ENST00000537642 MSH5O43196 834 aa19.83■□□□□ 0.77
USP28-204ENST00000537642 SMIM5Q71RC9 77 aa19.83■□□□□ 0.77
USP28-204ENST00000537642 SLC52A2Q9HAB3 445 aa19.83■□□□□ 0.77
USP28-204ENST00000537642 COL5A3P25940 1745 aaPredicted RBP19.82■□□□□ 0.76
USP28-204ENST00000537642 PRKAR2BP31323 418 aa19.82■□□□□ 0.76
USP28-204ENST00000537642 FLAD1Q8NFF5 587 aa19.82■□□□□ 0.76
USP28-204ENST00000537642 ARXQ96QS3 562 aa19.82■□□□□ 0.76
USP28-204ENST00000537642 U2AF1L5P0DN76 240 aaPredicted RBP19.81■□□□□ 0.76
USP28-204ENST00000537642 U2AF1Q01081 240 aaKnown RBP eCLIP19.81■□□□□ 0.76
USP28-204ENST00000537642 GAS2L2Q8NHY3 880 aa19.81■□□□□ 0.76
USP28-204ENST00000537642 PHACTR3Q96KR7 559 aa19.81■□□□□ 0.76
USP28-204ENST00000537642 FHDC1Q9C0D6 1143 aaPredicted RBP19.81■□□□□ 0.76
USP28-204ENST00000537642 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.8■□□□□ 0.76
USP28-204ENST00000537642 PTCD1O75127 700 aaKnown RBP19.8■□□□□ 0.76
USP28-204ENST00000537642 PHF14O94880 888 aa19.8■□□□□ 0.76
USP28-204ENST00000537642 MAP3K5Q99683 1374 aa19.8■□□□□ 0.76
USP28-204ENST00000537642 GNPATO15228 680 aa19.79■□□□□ 0.76
USP28-204ENST00000537642 SSFA2P28290 1259 aa19.79■□□□□ 0.76
USP28-204ENST00000537642 POLD1P28340 1107 aa19.79■□□□□ 0.76
USP28-204ENST00000537642 MYH14Q7Z406 1995 aaKnown RBP19.79■□□□□ 0.76
USP28-204ENST00000537642 GNAT3A8MTJ3 354 aa19.78■□□□□ 0.76
USP28-204ENST00000537642 FCHSD2O94868 740 aa19.78■□□□□ 0.76
USP28-204ENST00000537642 ZEB1P37275 1124 aaPredicted RBP19.78■□□□□ 0.76
USP28-204ENST00000537642 MSL1Q68DK7 614 aa19.78■□□□□ 0.76
USP28-204ENST00000537642 IL17REQ8NFR9 667 aa19.78■□□□□ 0.76
USP28-204ENST00000537642 SYT17Q9BSW7 474 aa19.78■□□□□ 0.76
USP28-204ENST00000537642 TJP1Q07157 1748 aa19.78■□□□□ 0.76
USP28-204ENST00000537642 CICQ96RK0 1608 aaPredicted RBP19.77■□□□□ 0.76
USP28-204ENST00000537642 SLC39A6Q13433 755 aa19.77■□□□□ 0.76
USP28-204ENST00000537642 CNTNAP4Q9C0A0 1308 aa19.76■□□□□ 0.75
USP28-204ENST00000537642 RALBP1Q15311 655 aa19.76■□□□□ 0.75
USP28-204ENST00000537642 RC3H1Q5TC82 1133 aaKnown RBP19.76■□□□□ 0.75
USP28-204ENST00000537642 SIPA1L3O60292 1781 aaPredicted RBP19.75■□□□□ 0.75
USP28-204ENST00000537642 KCPQ6ZWJ8 1503 aa19.75■□□□□ 0.75
USP28-204ENST00000537642 CEMIPQ8WUJ3 1361 aa19.73■□□□□ 0.75
USP28-204ENST00000537642 UBR2Q8IWV8 1755 aa19.73■□□□□ 0.75
USP28-204ENST00000537642 RTCBQ9Y3I0 505 aaKnown RBP19.73■□□□□ 0.75
USP28-204ENST00000537642 RPS6KA4O75676 772 aa19.72■□□□□ 0.75
USP28-204ENST00000537642 CRKLP46109 303 aaKnown RBP19.72■□□□□ 0.75
USP28-204ENST00000537642 TEFQ10587 303 aa19.72■□□□□ 0.75
USP28-204ENST00000537642 TRAPPC3LQ5T215 181 aa19.71■□□□□ 0.75
USP28-204ENST00000537642 DNAJC10Q8IXB1 793 aa19.71■□□□□ 0.75
USP28-204ENST00000537642 KLHL34Q8N239 644 aa19.71■□□□□ 0.75
USP28-204ENST00000537642 ARHGEF1Q92888 912 aaKnown RBP19.7■□□□□ 0.74
USP28-204ENST00000537642 C4AP0C0L4 1744 aa19.7■□□□□ 0.74
USP28-204ENST00000537642 ADRA2BP18089 450 aa19.69■□□□□ 0.74
USP28-204ENST00000537642 INTS5Q6P9B9 1019 aaKnown RBP19.69■□□□□ 0.74
USP28-204ENST00000537642 PLEKHF1Q96S99 279 aa19.69■□□□□ 0.74
USP28-204ENST00000537642 MYBBP1AQ9BQG0 1328 aaKnown RBP19.69■□□□□ 0.74
USP28-204ENST00000537642 DCAF8L1A6NGE4 600 aa19.68■□□□□ 0.74
USP28-204ENST00000537642 VSIG10Q8N0Z9 540 aa19.68■□□□□ 0.74
USP28-204ENST00000537642 DLG5Q8TDM6 1919 aa19.68■□□□□ 0.74
USP28-204ENST00000537642 CYP19A1P11511 503 aaPredicted RBP19.67■□□□□ 0.74
USP28-204ENST00000537642 ZNF790Q6PG37 636 aa19.67■□□□□ 0.74
USP28-204ENST00000537642 MCM10Q7L590 875 aa19.67■□□□□ 0.74
USP28-204ENST00000537642 TTC5Q8N0Z6 440 aa19.67■□□□□ 0.74
USP28-204ENST00000537642 NLGN2Q8NFZ4 835 aa19.67■□□□□ 0.74
USP28-204ENST00000537642 RTF1Q92541 710 aaKnown RBP19.67■□□□□ 0.74
USP28-204ENST00000537642 DCTN1Q14203 1278 aa19.66■□□□□ 0.74
USP28-204ENST00000537642 ZNF496Q96IT1 587 aaPredicted RBP19.66■□□□□ 0.74
USP28-204ENST00000537642 CCDC87Q9NVE4 849 aa19.66■□□□□ 0.74
USP28-204ENST00000537642 HTATSF1O43719 755 aaKnown RBP19.65■□□□□ 0.74
USP28-204ENST00000537642 RFC4P35249 363 aa19.65■□□□□ 0.74
USP28-204ENST00000537642 UTRNP46939 3433 aa19.65■□□□□ 0.74
USP28-204ENST00000537642 BTBD11A6QL63 1104 aa19.64■□□□□ 0.73
USP28-204ENST00000537642 KCNQ3O43525 872 aa19.64■□□□□ 0.73
USP28-204ENST00000537642 NEFMP07197 916 aa19.64■□□□□ 0.73
USP28-204ENST00000537642 GYS1P13807 737 aa19.64■□□□□ 0.73
USP28-204ENST00000537642 HEG1Q9ULI3 1381 aa19.64■□□□□ 0.73
USP28-204ENST00000537642 SOS1Q07889 1333 aaPredicted RBP19.63■□□□□ 0.73
USP28-204ENST00000537642 PRKRIP1Q9H875 184 aaPredicted RBP19.63■□□□□ 0.73
USP28-204ENST00000537642 MMP10P09238 476 aa19.62■□□□□ 0.73
USP28-204ENST00000537642 NFE2L2Q16236 605 aa19.62■□□□□ 0.73
USP28-204ENST00000537642 NLGN1Q8N2Q7 840 aa19.62■□□□□ 0.73
USP28-204ENST00000537642 PNNQ9H307 717 aaKnown RBP19.62■□□□□ 0.73
USP28-204ENST00000537642 SRP68Q9UHB9 627 aaKnown RBP19.62■□□□□ 0.73
USP28-204ENST00000537642 ZBTB1Q9Y2K1 713 aa19.62■□□□□ 0.73
USP28-204ENST00000537642 CD2APQ9Y5K6 639 aa19.62■□□□□ 0.73
USP28-204ENST00000537642 USP42Q9H9J4 1324 aaKnown RBP19.61■□□□□ 0.73
USP28-204ENST00000537642 FMNL2Q96PY5 1086 aa19.61■□□□□ 0.73
USP28-204ENST00000537642 MAPK8IP3Q9UPT6 1336 aa19.6■□□□□ 0.73
USP28-204ENST00000537642 STARD3NLO95772 234 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 166.6 ms