RNA–Protein interactions for RNA: ENST00000534830.5

CLSTN3-203, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-203ENST00000534830 POLKQ9UBT6 870 aa13.91□□□□□ -0.18
CLSTN3-203ENST00000534830 RAPGEF4Q8WZA2 1011 aa13.9□□□□□ -0.18
CLSTN3-203ENST00000534830 UBR3Q6ZT12 1888 aa13.9□□□□□ -0.18
CLSTN3-203ENST00000534830 TOGARAM1Q9Y4F4 1720 aa13.9□□□□□ -0.18
CLSTN3-203ENST00000534830 TATP17735 454 aaPredicted RBP13.89□□□□□ -0.19
CLSTN3-203ENST00000534830 FSTL1Q12841 308 aa13.89□□□□□ -0.19
CLSTN3-203ENST00000534830 PANK3Q9H999 370 aa13.89□□□□□ -0.19
CLSTN3-203ENST00000534830 ITGB4P16144 1822 aa13.89□□□□□ -0.19
CLSTN3-203ENST00000534830 N4BP2Q86UW6 1770 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-203ENST00000534830 PXDNLA1KZ92 1463 aa13.88□□□□□ -0.19
CLSTN3-203ENST00000534830 A0A0G2JLW4 131 aa13.88□□□□□ -0.19
CLSTN3-203ENST00000534830 MMP10P09238 476 aa13.88□□□□□ -0.19
CLSTN3-203ENST00000534830 SSFA2P28290 1259 aa13.88□□□□□ -0.19
CLSTN3-203ENST00000534830 SMARCC1Q92922 1105 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-203ENST00000534830 CYP27B1O15528 508 aa13.87□□□□□ -0.19
CLSTN3-203ENST00000534830 EYA1Q99502 592 aa13.87□□□□□ -0.19
CLSTN3-203ENST00000534830 PCDH11XQ9BZA7 1347 aa13.87□□□□□ -0.19
CLSTN3-203ENST00000534830 PCDH11YQ9BZA8 1340 aa13.87□□□□□ -0.19
CLSTN3-203ENST00000534830 FCHSD2O94868 740 aa13.86□□□□□ -0.19
CLSTN3-203ENST00000534830 TGFB2P61812 414 aa13.86□□□□□ -0.19
CLSTN3-203ENST00000534830 C9orf131Q5VYM1 1079 aa13.86□□□□□ -0.19
CLSTN3-203ENST00000534830 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
CLSTN3-203ENST00000534830 GNPATO15228 680 aa13.85□□□□□ -0.19
CLSTN3-203ENST00000534830 PPM1GO15355 546 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-203ENST00000534830 NKX1-1Q15270 411 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-203ENST00000534830 LINC00116Q8NCU8 138 aa13.85□□□□□ -0.19
CLSTN3-203ENST00000534830 KDM2BQ8NHM5 1336 aa13.85□□□□□ -0.19
CLSTN3-203ENST00000534830 PLEKHG2Q9H7P9 1386 aa13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 HSPA1AP0DMV8 641 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 HSPA1BP0DMV9 641 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 EIF4A2Q14240 407 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 RRAGCQ9HB90 399 aa13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 KIF13BQ9NQT8 1826 aa13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 KCPQ6ZWJ8 1503 aa13.84□□□□□ -0.19
CLSTN3-203ENST00000534830 LOC102724428A0A0B4J2F2 783 aa13.83□□□□□ -0.2
CLSTN3-203ENST00000534830 DPEP1P16444 411 aa13.83□□□□□ -0.2
CLSTN3-203ENST00000534830 SIK1P57059 783 aa13.83□□□□□ -0.2
CLSTN3-203ENST00000534830 PIGBQ92521 554 aa13.83□□□□□ -0.2
CLSTN3-203ENST00000534830 KIAA1551Q9HCM1 1747 aa13.83□□□□□ -0.2
CLSTN3-203ENST00000534830 SMC1BQ8NDV3 1235 aa13.82□□□□□ -0.2
CLSTN3-203ENST00000534830 TNNT2P45379 298 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-203ENST00000534830 CCDC87Q9NVE4 849 aa13.81□□□□□ -0.2
CLSTN3-203ENST00000534830 RNF181Q9P0P0 153 aa13.81□□□□□ -0.2
CLSTN3-203ENST00000534830 ATP6V1AP38606 617 aa13.8□□□□□ -0.2
CLSTN3-203ENST00000534830 ITPK1Q13572 414 aa13.8□□□□□ -0.2
CLSTN3-203ENST00000534830 NLGN1Q8N2Q7 840 aa13.8□□□□□ -0.2
CLSTN3-203ENST00000534830 SPG7Q9UQ90 795 aa13.8□□□□□ -0.2
CLSTN3-203ENST00000534830 KIF7Q2M1P5 1343 aa13.8□□□□□ -0.2
CLSTN3-203ENST00000534830 C10orf71Q711Q0 1435 aa13.8□□□□□ -0.2
CLSTN3-203ENST00000534830 AMER1Q5JTC6 1135 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-203ENST00000534830 BRCA1P38398 1863 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 PER1O15534 1290 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 PHKG2P15735 406 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 TRAPPC3LQ5T215 181 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 TMOD3Q9NYL9 352 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 PIM2Q9P1W9 311 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 ASAP1Q9ULH1 1129 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 RTCBQ9Y3I0 505 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 KNSTRNQ9Y448 316 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 PARP3Q9Y6F1 533 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 ARFGEF1Q9Y6D6 1849 aa13.78□□□□□ -0.2
CLSTN3-203ENST00000534830 MORC1Q86VD1 984 aa13.77□□□□□ -0.21
CLSTN3-203ENST00000534830 IFNL2Q8IZJ0 200 aa13.77□□□□□ -0.21
CLSTN3-203ENST00000534830 TNRC6CQ9HCJ0 1690 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-203ENST00000534830 KCNA3P22001 575 aa13.76□□□□□ -0.21
CLSTN3-203ENST00000534830 DALRD3Q5D0E6 543 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-203ENST00000534830 C4AP0C0L4 1744 aa13.76□□□□□ -0.21
CLSTN3-203ENST00000534830 DCAF5Q96JK2 942 aa13.75□□□□□ -0.21
CLSTN3-203ENST00000534830 IL13P35225 146 aa13.74□□□□□ -0.21
CLSTN3-203ENST00000534830 RFC4P35249 363 aa13.74□□□□□ -0.21
CLSTN3-203ENST00000534830 ARHGEF1Q92888 912 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-203ENST00000534830 SBF1O95248 1867 aa13.74□□□□□ -0.21
CLSTN3-203ENST00000534830 KDRP35968 1356 aa13.73□□□□□ -0.21
CLSTN3-203ENST00000534830 ZNF831Q5JPB2 1677 aa13.73□□□□□ -0.21
CLSTN3-203ENST00000534830 GYS1P13807 737 aa13.73□□□□□ -0.21
CLSTN3-203ENST00000534830 ATG3Q9NT62 314 aa13.73□□□□□ -0.21
CLSTN3-203ENST00000534830 ERVV-2B6SEH9 535 aa13.72□□□□□ -0.21
CLSTN3-203ENST00000534830 VEGFAP15692 232 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-203ENST00000534830 AEBP1Q8IUX7 1158 aa13.72□□□□□ -0.21
CLSTN3-203ENST00000534830 RBM42Q9BTD8 480 aaKnown RBP13.72□□□□□ -0.21
CLSTN3-203ENST00000534830 HSP90AB1P08238 724 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-203ENST00000534830 ADRA2BP18089 450 aa13.71□□□□□ -0.21
CLSTN3-203ENST00000534830 AMOTQ4VCS5 1084 aa13.71□□□□□ -0.21
CLSTN3-203ENST00000534830 PLEKHO1Q53GL0 409 aaPredicted RBP13.71□□□□□ -0.21
CLSTN3-203ENST00000534830 KDM6AO15550 1401 aaPredicted RBP13.71□□□□□ -0.22
CLSTN3-203ENST00000534830 NPC1L1Q9UHC9 1359 aa13.71□□□□□ -0.22
CLSTN3-203ENST00000534830 VIRMAQ69YN4 1812 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-203ENST00000534830 CHRNA5P30532 468 aa13.7□□□□□ -0.22
CLSTN3-203ENST00000534830 RASSF7Q02833 373 aa13.7□□□□□ -0.22
CLSTN3-203ENST00000534830 SCN11AQ9UI33 1791 aa13.7□□□□□ -0.22
CLSTN3-203ENST00000534830 GLTPD2A6NH11 291 aa13.69□□□□□ -0.22
CLSTN3-203ENST00000534830 RPS6KA4O75676 772 aa13.69□□□□□ -0.22
CLSTN3-203ENST00000534830 MTHFSP49914 203 aa13.69□□□□□ -0.22
CLSTN3-203ENST00000534830 RC3H1Q5TC82 1133 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-203ENST00000534830 SULT6B1Q6IMI4 303 aa13.69□□□□□ -0.22
CLSTN3-203ENST00000534830 SLC4A9Q96Q91 983 aa13.69□□□□□ -0.22
CLSTN3-203ENST00000534830 ZC3H4Q9UPT8 1303 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-203ENST00000534830 COL5A3P25940 1745 aaPredicted RBP13.68□□□□□ -0.22
CLSTN3-203ENST00000534830 ZNF530Q6P9A1 599 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms