RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 LOC102724428A0A0B4J2F2 783 aa11.21□□□□□ -0.62
NEDD8-207ENST00000533242 ANP32CO43423 234 aa11.21□□□□□ -0.62
NEDD8-207ENST00000533242 SIK1P57059 783 aa11.21□□□□□ -0.62
NEDD8-207ENST00000533242 BRCA1P38398 1863 aaKnown RBP11.21□□□□□ -0.62
NEDD8-207ENST00000533242 SMIM5Q71RC9 77 aa11.2□□□□□ -0.62
NEDD8-207ENST00000533242 PXDNLA1KZ92 1463 aa11.2□□□□□ -0.62
NEDD8-207ENST00000533242 CCER2I3L3R5 266 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 APLP1P51693 650 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.19□□□□□ -0.62
NEDD8-207ENST00000533242 COL5A3P25940 1745 aaPredicted RBP11.19□□□□□ -0.62
NEDD8-207ENST00000533242 ARFGEF1Q9Y6D6 1849 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 C4AP0C0L4 1744 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 GNPATO15228 680 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 CDCA8Q53HL2 280 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 TMOD3Q9NYL9 352 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 WWC3Q9ULE0 1092 aa11.19□□□□□ -0.62
NEDD8-207ENST00000533242 ITPK1Q13572 414 aa11.18□□□□□ -0.62
NEDD8-207ENST00000533242 EMILIN1Q9Y6C2 1016 aa11.18□□□□□ -0.62
NEDD8-207ENST00000533242 WDR90Q96KV7 1748 aa11.18□□□□□ -0.62
NEDD8-207ENST00000533242 C10orf71Q711Q0 1435 aa11.18□□□□□ -0.62
NEDD8-207ENST00000533242 TGFB2P61812 414 aa11.18□□□□□ -0.62
NEDD8-207ENST00000533242 PLEKHG2Q9H7P9 1386 aa11.17□□□□□ -0.62
NEDD8-207ENST00000533242 MMP10P09238 476 aa11.17□□□□□ -0.62
NEDD8-207ENST00000533242 ATP6V1AP38606 617 aa11.17□□□□□ -0.62
NEDD8-207ENST00000533242 ASAP1Q9ULH1 1129 aa11.17□□□□□ -0.62
NEDD8-207ENST00000533242 KDRP35968 1356 aa11.17□□□□□ -0.62
NEDD8-207ENST00000533242 IFNL2Q8IZJ0 200 aa11.17□□□□□ -0.62
NEDD8-207ENST00000533242 TOMM70O94826 608 aa11.16□□□□□ -0.62
NEDD8-207ENST00000533242 PHKG2P15735 406 aa11.16□□□□□ -0.62
NEDD8-207ENST00000533242 EIF4G2P78344 907 aaKnown RBP eCLIP11.16□□□□□ -0.62
NEDD8-207ENST00000533242 EYA1Q99502 592 aa11.16□□□□□ -0.62
NEDD8-207ENST00000533242 CARD14Q9BXL6 1004 aa11.16□□□□□ -0.62
NEDD8-207ENST00000533242 ATG3Q9NT62 314 aa11.16□□□□□ -0.62
NEDD8-207ENST00000533242 UTRNP46939 3433 aa11.16□□□□□ -0.62
NEDD8-207ENST00000533242 NLGN1Q8N2Q7 840 aa11.15□□□□□ -0.62
NEDD8-207ENST00000533242 TRAPPC3LQ5T215 181 aa11.15□□□□□ -0.62
NEDD8-207ENST00000533242 CCDC184Q52MB2 194 aa11.14□□□□□ -0.63
NEDD8-207ENST00000533242 RC3H1Q5TC82 1133 aaKnown RBP11.14□□□□□ -0.63
NEDD8-207ENST00000533242 DNAJC5GQ8N7S2 189 aa11.14□□□□□ -0.63
NEDD8-207ENST00000533242 CCDC87Q9NVE4 849 aa11.14□□□□□ -0.63
NEDD8-207ENST00000533242 BCS1LQ9Y276 419 aa11.14□□□□□ -0.63
NEDD8-207ENST00000533242 RTCBQ9Y3I0 505 aaKnown RBP11.14□□□□□ -0.63
NEDD8-207ENST00000533242 PPM1GO15355 546 aaPredicted RBP11.14□□□□□ -0.63
NEDD8-207ENST00000533242 ARHGAP27Q6ZUM4 889 aa11.14□□□□□ -0.63
NEDD8-207ENST00000533242 CNTNAP4Q9C0A0 1308 aa11.13□□□□□ -0.63
NEDD8-207ENST00000533242 A0A0G2JLW4 131 aa11.13□□□□□ -0.63
NEDD8-207ENST00000533242 MYH14Q7Z406 1995 aaKnown RBP11.13□□□□□ -0.63
NEDD8-207ENST00000533242 DPEP1P16444 411 aa11.13□□□□□ -0.63
NEDD8-207ENST00000533242 RBM46Q8TBY0 533 aaKnown RBP11.13□□□□□ -0.63
NEDD8-207ENST00000533242 TNRC6CQ9HCJ0 1690 aaKnown RBP11.12□□□□□ -0.63
NEDD8-207ENST00000533242 ERVV-2B6SEH9 535 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 SBF1O95248 1867 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 RPS6KA4O75676 772 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 FCHSD2O94868 740 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 ARHGEF1Q92888 912 aaKnown RBP11.12□□□□□ -0.63
NEDD8-207ENST00000533242 NMRK2Q9NPI5 230 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 POLKQ9UBT6 870 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 PARP3Q9Y6F1 533 aa11.12□□□□□ -0.63
NEDD8-207ENST00000533242 HSP90AB1P08238 724 aaKnown RBP11.11□□□□□ -0.63
NEDD8-207ENST00000533242 GYS1P13807 737 aa11.11□□□□□ -0.63
NEDD8-207ENST00000533242 SLC4A9Q96Q91 983 aa11.11□□□□□ -0.63
NEDD8-207ENST00000533242 TJP1Q07157 1748 aa11.11□□□□□ -0.63
NEDD8-207ENST00000533242 RFC4P35249 363 aa11.1□□□□□ -0.63
NEDD8-207ENST00000533242 RBM42Q9BTD8 480 aaKnown RBP11.1□□□□□ -0.63
NEDD8-207ENST00000533242 EIF4A2Q14240 407 aaKnown RBP11.1□□□□□ -0.63
NEDD8-207ENST00000533242 FKBP8Q14318 412 aa11.1□□□□□ -0.63
NEDD8-207ENST00000533242 C9orf131Q5VYM1 1079 aa11.1□□□□□ -0.63
NEDD8-207ENST00000533242 KCNA3P22001 575 aa11.09□□□□□ -0.63
NEDD8-207ENST00000533242 FSTL1Q12841 308 aa11.09□□□□□ -0.63
NEDD8-207ENST00000533242 C16orf71Q8IYS4 520 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-207ENST00000533242 DCAF5Q96JK2 942 aa11.09□□□□□ -0.63
NEDD8-207ENST00000533242 KIF7Q2M1P5 1343 aa11.09□□□□□ -0.63
NEDD8-207ENST00000533242 PIM2Q9P1W9 311 aa11.09□□□□□ -0.63
NEDD8-207ENST00000533242 ADAMTS7Q9UKP4 1686 aa11.09□□□□□ -0.63
NEDD8-207ENST00000533242 SCN11AQ9UI33 1791 aa11.08□□□□□ -0.63
NEDD8-207ENST00000533242 KDM6AO15550 1401 aaPredicted RBP11.08□□□□□ -0.64
NEDD8-207ENST00000533242 PLEKHO1Q53GL0 409 aaPredicted RBP11.08□□□□□ -0.64
NEDD8-207ENST00000533242 KCPQ6ZWJ8 1503 aa11.08□□□□□ -0.64
NEDD8-207ENST00000533242 KDM2BQ8NHM5 1336 aa11.08□□□□□ -0.64
NEDD8-207ENST00000533242 JMYQ8N9B5 988 aa11.08□□□□□ -0.64
NEDD8-207ENST00000533242 KLRG1Q96E93 195 aa11.08□□□□□ -0.64
NEDD8-207ENST00000533242 DLEC1Q9Y238 1755 aa11.08□□□□□ -0.64
NEDD8-207ENST00000533242 CABP4P57796 275 aa11.07□□□□□ -0.64
NEDD8-207ENST00000533242 AMOTQ4VCS5 1084 aa11.07□□□□□ -0.64
NEDD8-207ENST00000533242 DALRD3Q5D0E6 543 aaKnown RBP11.07□□□□□ -0.64
NEDD8-207ENST00000533242 AFDNP55196 1824 aaKnown RBP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 HNRNPUQ00839 825 aaKnown RBP eCLIP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 ZNF530Q6P9A1 599 aaPredicted RBP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 VIRMAQ69YN4 1812 aaKnown RBP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 USP42Q9H9J4 1324 aaKnown RBP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 NRXN2Q9P2S2 1712 aa11.06□□□□□ -0.64
NEDD8-207ENST00000533242 CRKLP46109 303 aaKnown RBP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 PRKRIP1Q9H875 184 aaPredicted RBP11.06□□□□□ -0.64
NEDD8-207ENST00000533242 RNF181Q9P0P0 153 aa11.06□□□□□ -0.64
NEDD8-207ENST00000533242 DDR1Q08345 913 aa11.05□□□□□ -0.64
NEDD8-207ENST00000533242 CCDC88AQ3V6T2 1871 aa11.05□□□□□ -0.64
NEDD8-207ENST00000533242 SRP68Q9UHB9 627 aaKnown RBP11.04□□□□□ -0.64
NEDD8-207ENST00000533242 CEP350Q5VT06 3117 aa11.04□□□□□ -0.64
NEDD8-207ENST00000533242 TIAM2Q8IVF5 1701 aa11.04□□□□□ -0.64
NEDD8-207ENST00000533242 ZC3H4Q9UPT8 1303 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms