RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 C4AP0C0L4 1744 aa19.85■□□□□ 0.77
CPSF1-201ENST00000526271 KDM6AO15550 1401 aaPredicted RBP19.85■□□□□ 0.77
CPSF1-201ENST00000526271 SSFA2P28290 1259 aa19.84■□□□□ 0.77
CPSF1-201ENST00000526271 SPG7Q9UQ90 795 aa19.84■□□□□ 0.77
CPSF1-201ENST00000526271 PXDNLA1KZ92 1463 aa19.83■□□□□ 0.76
CPSF1-201ENST00000526271 BRCA1P38398 1863 aaKnown RBP19.83■□□□□ 0.76
CPSF1-201ENST00000526271 GNPATO15228 680 aa19.82■□□□□ 0.76
CPSF1-201ENST00000526271 TNNT2P45379 298 aaPredicted RBP19.82■□□□□ 0.76
CPSF1-201ENST00000526271 IFNL2Q8IZJ0 200 aa19.82■□□□□ 0.76
CPSF1-201ENST00000526271 TMOD3Q9NYL9 352 aa19.82■□□□□ 0.76
CPSF1-201ENST00000526271 ATP6V1AP38606 617 aa19.8■□□□□ 0.76
CPSF1-201ENST00000526271 ADAMTS7Q9UKP4 1686 aa19.8■□□□□ 0.76
CPSF1-201ENST00000526271 TJP1Q07157 1748 aa19.79■□□□□ 0.76
CPSF1-201ENST00000526271 AEBP1Q8IUX7 1158 aa19.78■□□□□ 0.76
CPSF1-201ENST00000526271 C10orf71Q711Q0 1435 aa19.77■□□□□ 0.76
CPSF1-201ENST00000526271 MMP10P09238 476 aa19.77■□□□□ 0.76
CPSF1-201ENST00000526271 ZNF526Q8TF50 670 aaPredicted RBP19.77■□□□□ 0.76
CPSF1-201ENST00000526271 PLEKHG2Q9H7P9 1386 aa19.77■□□□□ 0.76
CPSF1-201ENST00000526271 KIF3CO14782 793 aa19.75■□□□□ 0.75
CPSF1-201ENST00000526271 PANK3Q9H999 370 aa19.75■□□□□ 0.75
CPSF1-201ENST00000526271 SCN11AQ9UI33 1791 aa19.75■□□□□ 0.75
CPSF1-201ENST00000526271 HSPA5P11021 654 aaKnown RBP19.74■□□□□ 0.75
CPSF1-201ENST00000526271 ARHGEF1Q92888 912 aaKnown RBP19.74■□□□□ 0.75
CPSF1-201ENST00000526271 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
CPSF1-201ENST00000526271 GPBP1L1Q9HC44 474 aaPredicted RBP19.74■□□□□ 0.75
CPSF1-201ENST00000526271 TIMELESSQ9UNS1 1208 aa19.74■□□□□ 0.75
CPSF1-201ENST00000526271 VIRMAQ69YN4 1812 aaKnown RBP19.74■□□□□ 0.75
CPSF1-201ENST00000526271 ERVV-2B6SEH9 535 aa19.73■□□□□ 0.75
CPSF1-201ENST00000526271 GYS1P13807 737 aa19.73■□□□□ 0.75
CPSF1-201ENST00000526271 CNTNAP4Q9C0A0 1308 aa19.72■□□□□ 0.75
CPSF1-201ENST00000526271 A0A0G2JLW4 131 aa19.71■□□□□ 0.75
CPSF1-201ENST00000526271 KCNA3P22001 575 aa19.71■□□□□ 0.75
CPSF1-201ENST00000526271 HMGB2P26583 209 aaKnown RBP19.71■□□□□ 0.75
CPSF1-201ENST00000526271 RC3H1Q5TC82 1133 aaKnown RBP19.71■□□□□ 0.75
CPSF1-201ENST00000526271 ARFGEF1Q9Y6D6 1849 aa19.7■□□□□ 0.74
CPSF1-201ENST00000526271 RPS6KA4O75676 772 aa19.7■□□□□ 0.74
CPSF1-201ENST00000526271 DCAF5Q96JK2 942 aa19.7■□□□□ 0.74
CPSF1-201ENST00000526271 RBM42Q9BTD8 480 aaKnown RBP19.7■□□□□ 0.74
CPSF1-201ENST00000526271 DPEP1P16444 411 aa19.69■□□□□ 0.74
CPSF1-201ENST00000526271 TRAPPC3LQ5T215 181 aa19.69■□□□□ 0.74
CPSF1-201ENST00000526271 ZNF530Q6P9A1 599 aaPredicted RBP19.69■□□□□ 0.74
CPSF1-201ENST00000526271 RTCBQ9Y3I0 505 aaKnown RBP19.69■□□□□ 0.74
CPSF1-201ENST00000526271 SRP68Q9UHB9 627 aaKnown RBP19.68■□□□□ 0.74
CPSF1-201ENST00000526271 HSPA6P17066 643 aa19.67■□□□□ 0.74
CPSF1-201ENST00000526271 IL13P35225 146 aa19.67■□□□□ 0.74
CPSF1-201ENST00000526271 DDR1Q08345 913 aa19.67■□□□□ 0.74
CPSF1-201ENST00000526271 CLSPNQ9HAW4 1339 aa19.67■□□□□ 0.74
CPSF1-201ENST00000526271 PLEKHO1Q53GL0 409 aaPredicted RBP19.66■□□□□ 0.74
CPSF1-201ENST00000526271 PTCD1O75127 700 aaKnown RBP19.65■□□□□ 0.74
CPSF1-201ENST00000526271 ADRA2BP18089 450 aa19.65■□□□□ 0.74
CPSF1-201ENST00000526271 CRKLP46109 303 aaKnown RBP19.65■□□□□ 0.74
CPSF1-201ENST00000526271 TGFB2P61812 414 aa19.65■□□□□ 0.74
CPSF1-201ENST00000526271 FKBP8Q14318 412 aa19.65■□□□□ 0.74
CPSF1-201ENST00000526271 NLGN1Q8N2Q7 840 aa19.65■□□□□ 0.74
CPSF1-201ENST00000526271 NFATC2IPQ8NCF5 419 aa19.65■□□□□ 0.74
CPSF1-201ENST00000526271 AFDNP55196 1824 aaKnown RBP19.65■□□□□ 0.74
CPSF1-201ENST00000526271 SBF1O95248 1867 aa19.65■□□□□ 0.74
CPSF1-201ENST00000526271 CABP4P57796 275 aa19.64■□□□□ 0.73
CPSF1-201ENST00000526271 SULT6B1Q6IMI4 303 aa19.64■□□□□ 0.73
CPSF1-201ENST00000526271 INTS5Q6P9B9 1019 aaKnown RBP19.64■□□□□ 0.73
CPSF1-201ENST00000526271 PCGF6Q9BYE7 350 aa19.64■□□□□ 0.73
CPSF1-201ENST00000526271 BCS1LQ9Y276 419 aa19.64■□□□□ 0.73
CPSF1-201ENST00000526271 KCPQ6ZWJ8 1503 aa19.63■□□□□ 0.73
CPSF1-201ENST00000526271 MRC1P22897 1456 aa19.63■□□□□ 0.73
CPSF1-201ENST00000526271 HSP90AB1P08238 724 aaKnown RBP19.63■□□□□ 0.73
CPSF1-201ENST00000526271 MTHFSP49914 203 aa19.63■□□□□ 0.73
CPSF1-201ENST00000526271 EIF4G2P78344 907 aaKnown RBP eCLIP19.63■□□□□ 0.73
CPSF1-201ENST00000526271 AMOTQ4VCS5 1084 aa19.63■□□□□ 0.73
CPSF1-201ENST00000526271 AMER1Q5JTC6 1135 aaPredicted RBP19.63■□□□□ 0.73
CPSF1-201ENST00000526271 USP42Q9H9J4 1324 aaKnown RBP19.62■□□□□ 0.73
CPSF1-201ENST00000526271 IFFO2Q5TF58 517 aa19.62■□□□□ 0.73
CPSF1-201ENST00000526271 LGR6Q9HBX8 967 aa19.62■□□□□ 0.73
CPSF1-201ENST00000526271 NRXN2Q9P2S2 1712 aa19.62■□□□□ 0.73
CPSF1-201ENST00000526271 RFC4P35249 363 aa19.61■□□□□ 0.73
CPSF1-201ENST00000526271 NMRK2Q9NPI5 230 aa19.61■□□□□ 0.73
CPSF1-201ENST00000526271 MORC1Q86VD1 984 aa19.6■□□□□ 0.73
CPSF1-201ENST00000526271 UBR2Q8IWV8 1755 aa19.6■□□□□ 0.73
CPSF1-201ENST00000526271 DNAJC10Q8IXB1 793 aa19.59■□□□□ 0.73
CPSF1-201ENST00000526271 CCDC87Q9NVE4 849 aa19.59■□□□□ 0.73
CPSF1-201ENST00000526271 POLRMTO00411 1230 aaKnown RBP19.58■□□□□ 0.72
CPSF1-201ENST00000526271 TM4SF1P30408 202 aa19.58■□□□□ 0.72
CPSF1-201ENST00000526271 CHRNA5P30532 468 aa19.58■□□□□ 0.72
CPSF1-201ENST00000526271 ARHGAP27Q6ZUM4 889 aa19.58■□□□□ 0.72
CPSF1-201ENST00000526271 DNAJC5GQ8N7S2 189 aa19.58■□□□□ 0.72
CPSF1-201ENST00000526271 PARP3Q9Y6F1 533 aa19.58■□□□□ 0.72
CPSF1-201ENST00000526271 FCHSD2O94868 740 aa19.57■□□□□ 0.72
CPSF1-201ENST00000526271 SLC39A6Q13433 755 aa19.57■□□□□ 0.72
CPSF1-201ENST00000526271 BCL2L12Q9HB09 334 aa19.57■□□□□ 0.72
CPSF1-201ENST00000526271 DLEC1Q9Y238 1755 aa19.57■□□□□ 0.72
CPSF1-201ENST00000526271 SOS1Q07889 1333 aaPredicted RBP19.56■□□□□ 0.72
CPSF1-201ENST00000526271 PRELPP51888 382 aa19.56■□□□□ 0.72
CPSF1-201ENST00000526271 COL3A1P02461 1466 aaPredicted RBP19.55■□□□□ 0.72
CPSF1-201ENST00000526271 PER1O15534 1290 aaPredicted RBP19.55■□□□□ 0.72
CPSF1-201ENST00000526271 C1orf141Q5JVX7 400 aa19.55■□□□□ 0.72
CPSF1-201ENST00000526271 C9orf131Q5VYM1 1079 aa19.55■□□□□ 0.72
CPSF1-201ENST00000526271 WDR90Q96KV7 1748 aa19.55■□□□□ 0.72
CPSF1-201ENST00000526271 SLC52A2Q9HAB3 445 aa19.55■□□□□ 0.72
CPSF1-201ENST00000526271 KIF7Q2M1P5 1343 aa19.54■□□□□ 0.72
CPSF1-201ENST00000526271 CYP19A1P11511 503 aaPredicted RBP19.54■□□□□ 0.72
CPSF1-201ENST00000526271 SIPA1L3O60292 1781 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 860.6 ms