RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TUBGCP6Q96RT7 1819 aa28.04■■■□□ 2.08
VPS28-203ENST00000524521 COL23A1Q86Y22 540 aaPredicted RBP28.03■■■□□ 2.08
VPS28-203ENST00000524521 AK7Q96M32 723 aa28.03■■■□□ 2.08
VPS28-203ENST00000524521 LGR6Q9HBX8 967 aa28.03■■■□□ 2.08
VPS28-203ENST00000524521 SGIP1Q9BQI5 828 aa28.02■■■□□ 2.08
VPS28-203ENST00000524521 ITPK1Q13572 414 aa28.01■■■□□ 2.07
VPS28-203ENST00000524521 LINC00116Q8NCU8 138 aa28.01■■■□□ 2.07
VPS28-203ENST00000524521 RNMTO43148 476 aaKnown RBP28■■■□□ 2.07
VPS28-203ENST00000524521 FLAD1Q8NFF5 587 aa28■■■□□ 2.07
VPS28-203ENST00000524521 U2AF1L5P0DN76 240 aaPredicted RBP27.99■■■□□ 2.07
VPS28-203ENST00000524521 U2AF1Q01081 240 aaKnown RBP eCLIP27.99■■■□□ 2.07
VPS28-203ENST00000524521 C4BP0C0L5 1744 aa27.98■■■□□ 2.07
VPS28-203ENST00000524521 ZEB1P37275 1124 aaPredicted RBP27.98■■■□□ 2.07
VPS28-203ENST00000524521 ARXQ96QS3 562 aa27.98■■■□□ 2.07
VPS28-203ENST00000524521 SLC52A2Q9HAB3 445 aa27.98■■■□□ 2.07
VPS28-203ENST00000524521 SCN11AQ9UI33 1791 aa27.98■■■□□ 2.07
VPS28-203ENST00000524521 PTCD1O75127 700 aaKnown RBP27.97■■■□□ 2.07
VPS28-203ENST00000524521 PRKAR2BP31323 418 aa27.97■■■□□ 2.07
VPS28-203ENST00000524521 SLC4A9Q96Q91 983 aa27.97■■■□□ 2.07
VPS28-203ENST00000524521 POLD1P28340 1107 aa27.96■■■□□ 2.07
VPS28-203ENST00000524521 SMIM5Q71RC9 77 aa27.96■■■□□ 2.07
VPS28-203ENST00000524521 GAS2L2Q8NHY3 880 aa27.96■■■□□ 2.07
VPS28-203ENST00000524521 RSPH6AQ9H0K4 717 aa27.96■■■□□ 2.07
VPS28-203ENST00000524521 PHF14O94880 888 aa27.95■■■□□ 2.06
VPS28-203ENST00000524521 PHACTR3Q96KR7 559 aa27.95■■■□□ 2.06
VPS28-203ENST00000524521 AMIGO3Q86WK7 504 aa27.94■■■□□ 2.06
VPS28-203ENST00000524521 FHDC1Q9C0D6 1143 aaPredicted RBP27.94■■■□□ 2.06
VPS28-203ENST00000524521 GNAT3A8MTJ3 354 aa27.93■■■□□ 2.06
VPS28-203ENST00000524521 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.92■■■□□ 2.06
VPS28-203ENST00000524521 GNPATO15228 680 aa27.92■■■□□ 2.06
VPS28-203ENST00000524521 FCHSD2O94868 740 aa27.92■■■□□ 2.06
VPS28-203ENST00000524521 MSL1Q68DK7 614 aa27.92■■■□□ 2.06
VPS28-203ENST00000524521 RALBP1Q15311 655 aa27.91■■■□□ 2.06
VPS28-203ENST00000524521 SYT17Q9BSW7 474 aa27.91■■■□□ 2.06
VPS28-203ENST00000524521 MAP3K5Q99683 1374 aa27.9■■■□□ 2.06
VPS28-203ENST00000524521 SSFA2P28290 1259 aa27.9■■■□□ 2.06
VPS28-203ENST00000524521 SLC39A6Q13433 755 aa27.9■■■□□ 2.06
VPS28-203ENST00000524521 IL17REQ8NFR9 667 aa27.89■■■□□ 2.06
VPS28-203ENST00000524521 UBR3Q6ZT12 1888 aa27.89■■■□□ 2.05
VPS28-203ENST00000524521 VIRMAQ69YN4 1812 aaKnown RBP27.88■■■□□ 2.05
VPS28-203ENST00000524521 DCAF8L1A6NGE4 600 aa27.87■■■□□ 2.05
VPS28-203ENST00000524521 TEFQ10587 303 aa27.87■■■□□ 2.05
VPS28-203ENST00000524521 RC3H1Q5TC82 1133 aaKnown RBP27.87■■■□□ 2.05
VPS28-203ENST00000524521 KLHL34Q8N239 644 aa27.87■■■□□ 2.05
VPS28-203ENST00000524521 RTCBQ9Y3I0 505 aaKnown RBP27.87■■■□□ 2.05
VPS28-203ENST00000524521 ZNF831Q5JPB2 1677 aa27.87■■■□□ 2.05
VPS28-203ENST00000524521 MRC1P22897 1456 aa27.86■■■□□ 2.05
VPS28-203ENST00000524521 ADAMTS7Q9UKP4 1686 aa27.85■■■□□ 2.05
VPS28-203ENST00000524521 COL24A1Q17RW2 1714 aa27.85■■■□□ 2.05
VPS28-203ENST00000524521 TRAPPC3LQ5T215 181 aa27.84■■■□□ 2.05
VPS28-203ENST00000524521 CNTNAP4Q9C0A0 1308 aa27.84■■■□□ 2.05
VPS28-203ENST00000524521 RPS6KA4O75676 772 aa27.82■■■□□ 2.04
VPS28-203ENST00000524521 CRKLP46109 303 aaKnown RBP27.82■■■□□ 2.04
VPS28-203ENST00000524521 NEFMP07197 916 aa27.81■■■□□ 2.04
VPS28-203ENST00000524521 DNAJC10Q8IXB1 793 aa27.81■■■□□ 2.04
VPS28-203ENST00000524521 RTF1Q92541 710 aaKnown RBP27.81■■■□□ 2.04
VPS28-203ENST00000524521 COL5A3P25940 1745 aaPredicted RBP27.81■■■□□ 2.04
VPS28-203ENST00000524521 TTC5Q8N0Z6 440 aa27.8■■■□□ 2.04
VPS28-203ENST00000524521 ARHGEF1Q92888 912 aaKnown RBP27.79■■■□□ 2.04
VPS28-203ENST00000524521 MYBBP1AQ9BQG0 1328 aaKnown RBP27.78■■■□□ 2.04
VPS28-203ENST00000524521 MYH14Q7Z406 1995 aaKnown RBP27.77■■■□□ 2.04
VPS28-203ENST00000524521 CEMIPQ8WUJ3 1361 aa27.77■■■□□ 2.04
VPS28-203ENST00000524521 ADRA2BP18089 450 aa27.77■■■□□ 2.04
VPS28-203ENST00000524521 TJP1Q07157 1748 aa27.76■■■□□ 2.03
VPS28-203ENST00000524521 RFC4P35249 363 aa27.76■■■□□ 2.03
VPS28-203ENST00000524521 ZNF790Q6PG37 636 aa27.76■■■□□ 2.03
VPS28-203ENST00000524521 MCM10Q7L590 875 aa27.76■■■□□ 2.03
VPS28-203ENST00000524521 INTS5Q6P9B9 1019 aaKnown RBP27.75■■■□□ 2.03
VPS28-203ENST00000524521 VSIG10Q8N0Z9 540 aa27.75■■■□□ 2.03
VPS28-203ENST00000524521 PNNQ9H307 717 aaKnown RBP27.75■■■□□ 2.03
VPS28-203ENST00000524521 KCPQ6ZWJ8 1503 aa27.75■■■□□ 2.03
VPS28-203ENST00000524521 BTBD11A6QL63 1104 aa27.74■■■□□ 2.03
VPS28-203ENST00000524521 CYP19A1P11511 503 aaPredicted RBP27.74■■■□□ 2.03
VPS28-203ENST00000524521 DCTN1Q14203 1278 aa27.74■■■□□ 2.03
VPS28-203ENST00000524521 PLEKHF1Q96S99 279 aa27.74■■■□□ 2.03
VPS28-203ENST00000524521 CCDC87Q9NVE4 849 aa27.74■■■□□ 2.03
VPS28-203ENST00000524521 HTATSF1O43719 755 aaKnown RBP27.73■■■□□ 2.03
VPS28-203ENST00000524521 ZNF496Q96IT1 587 aaPredicted RBP27.73■■■□□ 2.03
VPS28-203ENST00000524521 NLGN2Q8NFZ4 835 aa27.72■■■□□ 2.03
VPS28-203ENST00000524521 CICQ96RK0 1608 aaPredicted RBP27.71■■■□□ 2.03
VPS28-203ENST00000524521 NLGN1Q8N2Q7 840 aa27.71■■■□□ 2.03
VPS28-203ENST00000524521 SIPA1L3O60292 1781 aaPredicted RBP27.71■■■□□ 2.03
VPS28-203ENST00000524521 PRKRIP1Q9H875 184 aaPredicted RBP27.7■■■□□ 2.02
VPS28-203ENST00000524521 MAPK8IP3Q9UPT6 1336 aa27.69■■■□□ 2.02
VPS28-203ENST00000524521 KCNQ3O43525 872 aa27.69■■■□□ 2.02
VPS28-203ENST00000524521 MMP10P09238 476 aa27.69■■■□□ 2.02
VPS28-203ENST00000524521 GYS1P13807 737 aa27.69■■■□□ 2.02
VPS28-203ENST00000524521 FMNL2Q96PY5 1086 aa27.69■■■□□ 2.02
VPS28-203ENST00000524521 UBR2Q8IWV8 1755 aa27.68■■■□□ 2.02
VPS28-203ENST00000524521 STARD3NLO95772 234 aa27.68■■■□□ 2.02
VPS28-203ENST00000524521 NFE2L2Q16236 605 aa27.68■■■□□ 2.02
VPS28-203ENST00000524521 CD2APQ9Y5K6 639 aa27.68■■■□□ 2.02
VPS28-203ENST00000524521 HEG1Q9ULI3 1381 aa27.68■■■□□ 2.02
VPS28-203ENST00000524521 GPR162Q16538 588 aa27.67■■■□□ 2.02
VPS28-203ENST00000524521 PELP1Q8IZL8 1130 aaKnown RBP27.67■■■□□ 2.02
VPS28-203ENST00000524521 TEX13AQ9BXU3 409 aaPredicted RBP27.67■■■□□ 2.02
VPS28-203ENST00000524521 SRP68Q9UHB9 627 aaKnown RBP27.67■■■□□ 2.02
VPS28-203ENST00000524521 ZBTB1Q9Y2K1 713 aa27.67■■■□□ 2.02
VPS28-203ENST00000524521 SOS1Q07889 1333 aaPredicted RBP27.66■■■□□ 2.02
VPS28-203ENST00000524521 CANXP27824 592 aaKnown RBP27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms