RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 SYT17Q9BSW7 474 aa23.17■■□□□ 1.3
CCNC-213ENST00000523541 PHF14O94880 888 aa23.16■■□□□ 1.3
CCNC-213ENST00000523541 PPP2R1AP30153 589 aa23.16■■□□□ 1.3
CCNC-213ENST00000523541 ATP6V1AP38606 617 aa23.16■■□□□ 1.3
CCNC-213ENST00000523541 U2SURPO15042 1029 aaKnown RBP23.15■■□□□ 1.3
CCNC-213ENST00000523541 MSL1Q68DK7 614 aa23.15■■□□□ 1.3
CCNC-213ENST00000523541 RBM42Q9BTD8 480 aaKnown RBP23.15■■□□□ 1.3
CCNC-213ENST00000523541 COL3A1P02461 1466 aaPredicted RBP23.15■■□□□ 1.3
CCNC-213ENST00000523541 KDM6AO15550 1401 aaPredicted RBP23.15■■□□□ 1.3
CCNC-213ENST00000523541 NFATC2IPQ8NCF5 419 aa23.14■■□□□ 1.29
CCNC-213ENST00000523541 TAF1LQ8IZX4 1826 aa23.14■■□□□ 1.29
CCNC-213ENST00000523541 C4BP0C0L5 1744 aa23.13■■□□□ 1.29
CCNC-213ENST00000523541 MTHFSDQ2M296 383 aaKnown RBP23.13■■□□□ 1.29
CCNC-213ENST00000523541 GAS2L2Q8NHY3 880 aa23.12■■□□□ 1.29
CCNC-213ENST00000523541 YY1P25490 414 aa23.11■■□□□ 1.29
CCNC-213ENST00000523541 SSFA2P28290 1259 aa23.11■■□□□ 1.29
CCNC-213ENST00000523541 LINC00116Q8NCU8 138 aa23.11■■□□□ 1.29
CCNC-213ENST00000523541 RC3H1Q5TC82 1133 aaKnown RBP23.1■■□□□ 1.29
CCNC-213ENST00000523541 SLC52A2Q9HAB3 445 aa23.1■■□□□ 1.29
CCNC-213ENST00000523541 MAP3K5Q99683 1374 aa23.1■■□□□ 1.29
CCNC-213ENST00000523541 GNPATO15228 680 aa23.09■■□□□ 1.29
CCNC-213ENST00000523541 RNMTO43148 476 aaKnown RBP23.09■■□□□ 1.29
CCNC-213ENST00000523541 FCHSD2O94868 740 aa23.09■■□□□ 1.29
CCNC-213ENST00000523541 ZEB1P37275 1124 aaPredicted RBP23.09■■□□□ 1.29
CCNC-213ENST00000523541 ITPK1Q13572 414 aa23.09■■□□□ 1.29
CCNC-213ENST00000523541 PELP1Q8IZL8 1130 aaKnown RBP23.09■■□□□ 1.29
CCNC-213ENST00000523541 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.08■■□□□ 1.29
CCNC-213ENST00000523541 SMIM5Q71RC9 77 aa23.07■■□□□ 1.28
CCNC-213ENST00000523541 LGR6Q9HBX8 967 aa23.07■■□□□ 1.28
CCNC-213ENST00000523541 ZNF831Q5JPB2 1677 aa23.06■■□□□ 1.28
CCNC-213ENST00000523541 GNAT3A8MTJ3 354 aa23.06■■□□□ 1.28
CCNC-213ENST00000523541 PTCD1O75127 700 aaKnown RBP23.06■■□□□ 1.28
CCNC-213ENST00000523541 GPR162Q16538 588 aa23.06■■□□□ 1.28
CCNC-213ENST00000523541 RALBP1Q15311 655 aa23.05■■□□□ 1.28
CCNC-213ENST00000523541 SLC4A9Q96Q91 983 aa23.05■■□□□ 1.28
CCNC-213ENST00000523541 RSPH6AQ9H0K4 717 aa23.05■■□□□ 1.28
CCNC-213ENST00000523541 U2AF1L5P0DN76 240 aaPredicted RBP23.04■■□□□ 1.28
CCNC-213ENST00000523541 ADRA2BP18089 450 aa23.04■■□□□ 1.28
CCNC-213ENST00000523541 U2AF1Q01081 240 aaKnown RBP eCLIP23.04■■□□□ 1.28
CCNC-213ENST00000523541 CNTNAP4Q9C0A0 1308 aa23.04■■□□□ 1.28
CCNC-213ENST00000523541 COL24A1Q17RW2 1714 aa23.03■■□□□ 1.28
CCNC-213ENST00000523541 RTCBQ9Y3I0 505 aaKnown RBP23.03■■□□□ 1.28
CCNC-213ENST00000523541 UBR3Q6ZT12 1888 aa23.02■■□□□ 1.28
CCNC-213ENST00000523541 PRKAR2BP31323 418 aa23.02■■□□□ 1.28
CCNC-213ENST00000523541 TRAPPC3LQ5T215 181 aa23.02■■□□□ 1.28
CCNC-213ENST00000523541 AMIGO3Q86WK7 504 aa23.02■■□□□ 1.28
CCNC-213ENST00000523541 SCN11AQ9UI33 1791 aa23.01■■□□□ 1.27
CCNC-213ENST00000523541 MRC1P22897 1456 aa23.01■■□□□ 1.27
CCNC-213ENST00000523541 RPS6KA4O75676 772 aa23.01■■□□□ 1.27
CCNC-213ENST00000523541 VSIG10Q8N0Z9 540 aa23.01■■□□□ 1.27
CCNC-213ENST00000523541 NLGN2Q8NFZ4 835 aa23■■□□□ 1.27
CCNC-213ENST00000523541 PNNQ9H307 717 aaKnown RBP23■■□□□ 1.27
CCNC-213ENST00000523541 HTATSF1O43719 755 aaKnown RBP22.99■■□□□ 1.27
CCNC-213ENST00000523541 TEFQ10587 303 aa22.99■■□□□ 1.27
CCNC-213ENST00000523541 DDX10Q13206 875 aaKnown RBP22.99■■□□□ 1.27
CCNC-213ENST00000523541 IL17REQ8NFR9 667 aa22.99■■□□□ 1.27
CCNC-213ENST00000523541 PHACTR3Q96KR7 559 aa22.99■■□□□ 1.27
CCNC-213ENST00000523541 ADAMTS7Q9UKP4 1686 aa22.98■■□□□ 1.27
CCNC-213ENST00000523541 NEFMP07197 916 aa22.97■■□□□ 1.27
CCNC-213ENST00000523541 RFC4P35249 363 aa22.96■■□□□ 1.27
CCNC-213ENST00000523541 NLGN1Q8N2Q7 840 aa22.96■■□□□ 1.27
CCNC-213ENST00000523541 CD2APQ9Y5K6 639 aa22.96■■□□□ 1.27
CCNC-213ENST00000523541 CEMIPQ8WUJ3 1361 aa22.96■■□□□ 1.27
CCNC-213ENST00000523541 CRKLP46109 303 aaKnown RBP22.95■■□□□ 1.26
CCNC-213ENST00000523541 TTC5Q8N0Z6 440 aa22.95■■□□□ 1.26
CCNC-213ENST00000523541 RTF1Q92541 710 aaKnown RBP22.95■■□□□ 1.26
CCNC-213ENST00000523541 SLC39A6Q13433 755 aa22.94■■□□□ 1.26
CCNC-213ENST00000523541 ARHGEF1Q92888 912 aaKnown RBP22.94■■□□□ 1.26
CCNC-213ENST00000523541 TEX13AQ9BXU3 409 aaPredicted RBP22.94■■□□□ 1.26
CCNC-213ENST00000523541 COL5A3P25940 1745 aaPredicted RBP22.94■■□□□ 1.26
CCNC-213ENST00000523541 ZNF790Q6PG37 636 aa22.92■■□□□ 1.26
CCNC-213ENST00000523541 CICQ96RK0 1608 aaPredicted RBP22.92■■□□□ 1.26
CCNC-213ENST00000523541 VIRMAQ69YN4 1812 aaKnown RBP22.92■■□□□ 1.26
CCNC-213ENST00000523541 MMP10P09238 476 aa22.91■■□□□ 1.26
CCNC-213ENST00000523541 INTS5Q6P9B9 1019 aaKnown RBP22.91■■□□□ 1.26
CCNC-213ENST00000523541 STARD3NLO95772 234 aa22.9■■□□□ 1.26
CCNC-213ENST00000523541 CYP19A1P11511 503 aaPredicted RBP22.9■■□□□ 1.26
CCNC-213ENST00000523541 DNAJC10Q8IXB1 793 aa22.9■■□□□ 1.26
CCNC-213ENST00000523541 CCDC87Q9NVE4 849 aa22.9■■□□□ 1.26
CCNC-213ENST00000523541 MYBBP1AQ9BQG0 1328 aaKnown RBP22.89■■□□□ 1.26
CCNC-213ENST00000523541 UTRNP46939 3433 aa22.89■■□□□ 1.25
CCNC-213ENST00000523541 BTBD11A6QL63 1104 aa22.88■■□□□ 1.25
CCNC-213ENST00000523541 PLEKHF1Q96S99 279 aa22.88■■□□□ 1.25
CCNC-213ENST00000523541 TJP1Q07157 1748 aa22.88■■□□□ 1.25
CCNC-213ENST00000523541 GRIN3BO60391 1043 aa22.87■■□□□ 1.25
CCNC-213ENST00000523541 GYS1P13807 737 aa22.87■■□□□ 1.25
CCNC-213ENST00000523541 FMNL2Q96PY5 1086 aa22.87■■□□□ 1.25
CCNC-213ENST00000523541 WWC3Q9ULE0 1092 aa22.87■■□□□ 1.25
CCNC-213ENST00000523541 KCPQ6ZWJ8 1503 aa22.87■■□□□ 1.25
CCNC-213ENST00000523541 PARP3Q9Y6F1 533 aa22.86■■□□□ 1.25
CCNC-213ENST00000523541 CHD4Q14839 1912 aa22.86■■□□□ 1.25
CCNC-213ENST00000523541 ZNF496Q96IT1 587 aaPredicted RBP22.85■■□□□ 1.25
CCNC-213ENST00000523541 HEG1Q9ULI3 1381 aa22.85■■□□□ 1.25
CCNC-213ENST00000523541 MYH14Q7Z406 1995 aaKnown RBP22.84■■□□□ 1.25
CCNC-213ENST00000523541 YBX3P16989 372 aaKnown RBP eCLIP22.84■■□□□ 1.259e-9■□□□□ 8.7
CCNC-213ENST00000523541 SOS1Q07889 1333 aaPredicted RBP22.83■■□□□ 1.25
CCNC-213ENST00000523541 USP42Q9H9J4 1324 aaKnown RBP22.83■■□□□ 1.25
CCNC-213ENST00000523541 ZPR1O75312 459 aa22.83■■□□□ 1.25
CCNC-213ENST00000523541 TAF7Q15545 349 aaPredicted RBP22.83■■□□□ 1.25
CCNC-213ENST00000523541 NFE2L2Q16236 605 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms