RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 PRPF40AO75400 957 aaKnown RBP10.16□□□□□ -0.78
CSMD1-213ENST00000523488 PKP1Q13835 747 aa10.16□□□□□ -0.78
CSMD1-213ENST00000523488 TMEM57Q8N5G2 664 aa10.16□□□□□ -0.78
CSMD1-213ENST00000523488 PARP4Q9UKK3 1724 aaKnown RBP10.16□□□□□ -0.78
CSMD1-213ENST00000523488 SMTNL1A8MU46 457 aa10.16□□□□□ -0.78
CSMD1-213ENST00000523488 MSL3Q8N5Y2 521 aaKnown RBP10.16□□□□□ -0.78
CSMD1-213ENST00000523488 KCNJ4P48050 445 aa10.16□□□□□ -0.78
CSMD1-213ENST00000523488 RBM6P78332 1123 aaKnown RBP10.16□□□□□ -0.78
CSMD1-213ENST00000523488 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.16□□□□□ -0.78
CSMD1-213ENST00000523488 EFCC1Q9HA90 598 aa10.16□□□□□ -0.78
CSMD1-213ENST00000523488 DIAPH3Q9NSV4 1193 aa10.16□□□□□ -0.78
CSMD1-213ENST00000523488 MARF1Q9Y4F3 1742 aaKnown RBP10.16□□□□□ -0.78
CSMD1-213ENST00000523488 TTC21BQ7Z4L5 1316 aa10.15□□□□□ -0.78
CSMD1-213ENST00000523488 AP5Z1O43299 807 aa10.15□□□□□ -0.78
CSMD1-213ENST00000523488 KDM4AO75164 1064 aa10.15□□□□□ -0.78
CSMD1-213ENST00000523488 CYP2C19P33261 490 aa10.15□□□□□ -0.78
CSMD1-213ENST00000523488 MRPL50Q8N5N7 158 aaKnown RBP10.15□□□□□ -0.78
CSMD1-213ENST00000523488 CCDC66A2RUB6 948 aa10.15□□□□□ -0.79
CSMD1-213ENST00000523488 KCNJ6P48051 423 aa10.15□□□□□ -0.79
CSMD1-213ENST00000523488 PLCB2Q00722 1185 aa10.15□□□□□ -0.79
CSMD1-213ENST00000523488 NYAP1Q6ZVC0 841 aa10.15□□□□□ -0.79
CSMD1-213ENST00000523488 GEMIN8Q9NWZ8 242 aaKnown RBP10.15□□□□□ -0.79
CSMD1-213ENST00000523488 JARID2Q92833 1246 aaPredicted RBP10.14□□□□□ -0.79
CSMD1-213ENST00000523488 SYCE3A1L190 88 aa10.14□□□□□ -0.79
CSMD1-213ENST00000523488 RIOK3O14730 519 aaKnown RBP10.14□□□□□ -0.79
CSMD1-213ENST00000523488 REC8O95072 547 aa10.14□□□□□ -0.79
CSMD1-213ENST00000523488 H2AFXP16104 143 aaPredicted RBP10.14□□□□□ -0.79
CSMD1-213ENST00000523488 PLA2G4DQ86XP0 818 aa10.14□□□□□ -0.79
CSMD1-213ENST00000523488 NFATC2IPQ8NCF5 419 aa10.14□□□□□ -0.79
CSMD1-213ENST00000523488 KCNB2Q92953 911 aa10.14□□□□□ -0.79
CSMD1-213ENST00000523488 RBM42Q9BTD8 480 aaKnown RBP10.14□□□□□ -0.79
CSMD1-213ENST00000523488 PHF14O94880 888 aa10.14□□□□□ -0.79
CSMD1-213ENST00000523488 RBM27Q9P2N5 1060 aaKnown RBP10.14□□□□□ -0.79
CSMD1-213ENST00000523488 ZBTB22O15209 634 aa10.13□□□□□ -0.79
CSMD1-213ENST00000523488 AOX1Q06278 1338 aa10.13□□□□□ -0.79
CSMD1-213ENST00000523488 MRC1P22897 1456 aa10.13□□□□□ -0.79
CSMD1-213ENST00000523488 INTS3Q68E01 1043 aaKnown RBP10.12□□□□□ -0.79
CSMD1-213ENST00000523488 KDM3BQ7LBC6 1761 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 CHMP4AQ9BY43 222 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 PAXBP1Q9Y5B6 917 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 JCADQ9P266 1359 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 NOP2P46087 812 aaKnown RBP10.12□□□□□ -0.79
CSMD1-213ENST00000523488 CCDC93Q567U6 631 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 ITPRIPQ8IWB1 547 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 L2HGDHQ9H9P8 463 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 LAMA4Q16363 1823 aa10.12□□□□□ -0.79
CSMD1-213ENST00000523488 U2AF2P26368 475 aaKnown RBP eCLIP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 TMPOP42166 694 aaKnown RBP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 CCDC183Q5T5S1 534 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 NOB1Q9ULX3 412 aaKnown RBP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 NRXN3Q9Y4C0 1643 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 PEAK1Q9H792 1746 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 MX1P20591 662 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 FOXD4L5Q5VV16 416 aaPredicted RBP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 FOXD4L4Q8WXT5 416 aaPredicted RBP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 LNPKQ9C0E8 428 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 RRP7AQ9Y3A4 280 aaKnown RBP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 MLH3Q9UHC1 1453 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 PTPRCP08575 1304 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 RPS6KA5O75582 802 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 SARM1Q6SZW1 724 aa10.11□□□□□ -0.79
CSMD1-213ENST00000523488 SYAP1Q96A49 352 aaPredicted RBP10.11□□□□□ -0.79
CSMD1-213ENST00000523488 ELP1O95163 1332 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 IPO8O15397 1037 aaKnown RBP10.1□□□□□ -0.79
CSMD1-213ENST00000523488 ZRANB2O95218 330 aaKnown RBP eCLIP10.1□□□□□ -0.79
CSMD1-213ENST00000523488 HNRNPMP52272 730 aaKnown RBP eCLIP10.1□□□□□ -0.79
CSMD1-213ENST00000523488 RPGRIP1LQ68CZ1 1315 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 ATP8B1O43520 1251 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 RGS22Q8NE09 1264 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 C14orf93Q9H972 538 aaKnown RBP10.1□□□□□ -0.79
CSMD1-213ENST00000523488 PSD3Q9NYI0 1048 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 TNNT3P45378 269 aaPredicted RBP10.1□□□□□ -0.79
CSMD1-213ENST00000523488 PSEN1P49768 467 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 AEBP2Q6ZN18 517 aaPredicted RBP10.1□□□□□ -0.79
CSMD1-213ENST00000523488 PIK3C2AO00443 1686 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 LMTK3Q96Q04 1460 aa10.1□□□□□ -0.79
CSMD1-213ENST00000523488 ZGPATQ8N5A5 531 aaKnown RBP10.09□□□□□ -0.79
CSMD1-213ENST00000523488 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.09□□□□□ -0.79
CSMD1-213ENST00000523488 PYCARDQ9ULZ3 195 aa10.09□□□□□ -0.79
CSMD1-213ENST00000523488 ADAMTS7Q9UKP4 1686 aa10.09□□□□□ -0.79
CSMD1-213ENST00000523488 TPRNQ4KMQ1 711 aa10.09□□□□□ -0.79
CSMD1-213ENST00000523488 TTC14Q96N46 770 aa10.09□□□□□ -0.79
CSMD1-213ENST00000523488 CALCOCO1Q9P1Z2 691 aa10.09□□□□□ -0.79
CSMD1-213ENST00000523488 FEZ2Q9UHY8 353 aaPredicted RBP10.09□□□□□ -0.79
CSMD1-213ENST00000523488 ANKRD44Q8N8A2 993 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 TIGD1Q96MW7 591 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 ZNF446Q9NWS9 450 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 TTC21AQ8NDW8 1320 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 VAMP4O75379 141 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 IRX3P78415 501 aaPredicted RBP10.08□□□□□ -0.8
CSMD1-213ENST00000523488 EXOSC9Q06265 439 aaKnown RBP10.08□□□□□ -0.8
CSMD1-213ENST00000523488 ZNF397Q8NF99 534 aaPredicted RBP10.08□□□□□ -0.8
CSMD1-213ENST00000523488 ADCY5O95622 1261 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 STAP2Q9UGK3 403 aa10.08□□□□□ -0.8
CSMD1-213ENST00000523488 TSGA10IPQ3SY00 556 aa10.07□□□□□ -0.8
CSMD1-213ENST00000523488 RNF20Q5VTR2 975 aa10.07□□□□□ -0.8
CSMD1-213ENST00000523488 AEBP1Q8IUX7 1158 aa10.07□□□□□ -0.8
CSMD1-213ENST00000523488 PHRF1Q9P1Y6 1649 aaKnown RBP10.07□□□□□ -0.8
CSMD1-213ENST00000523488 TDRD7Q8NHU6 1098 aaKnown RBP10.07□□□□□ -0.8
CSMD1-213ENST00000523488 TTC12Q9H892 705 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms