RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 CABP2Q9NPB3 220 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 TTC21AQ8NDW8 1320 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 NINLQ9Y2I6 1382 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 PIK3C2AO00443 1686 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 USP54Q70EL1 1684 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 TPD52L2O43399 206 aaKnown RBP9.44□□□□□ -0.9
HDAC3-216ENST00000523088 SATB1Q01826 763 aa9.44□□□□□ -0.9
HDAC3-216ENST00000523088 MTA1Q13330 715 aa9.44□□□□□ -0.9
HDAC3-216ENST00000523088 DNTTIP2Q5QJE6 756 aaKnown RBP9.44□□□□□ -0.9
HDAC3-216ENST00000523088 ANKRD23Q86SG2 305 aa9.44□□□□□ -0.9
HDAC3-216ENST00000523088 MSL3Q8N5Y2 521 aaKnown RBP9.44□□□□□ -0.9
HDAC3-216ENST00000523088 CARD11Q9BXL7 1154 aa9.44□□□□□ -0.9
HDAC3-216ENST00000523088 GTPBP4Q9BZE4 634 aaKnown RBP9.44□□□□□ -0.9
HDAC3-216ENST00000523088 ZRANB1Q9UGI0 708 aa9.44□□□□□ -0.9
HDAC3-216ENST00000523088 THRAP3Q9Y2W1 955 aaKnown RBP9.44□□□□□ -0.9
HDAC3-216ENST00000523088 PARP4Q9UKK3 1724 aaKnown RBP9.43□□□□□ -0.9
HDAC3-216ENST00000523088 SSH2Q76I76 1423 aa9.43□□□□□ -0.9
HDAC3-216ENST00000523088 SPATA31A1Q5TZJ5 1347 aa9.43□□□□□ -0.9
HDAC3-216ENST00000523088 LETM1O95202 739 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-216ENST00000523088 KCNH5Q8NCM2 988 aa9.43□□□□□ -0.9
HDAC3-216ENST00000523088 SNRNP27Q8WVK2 155 aaKnown RBP9.43□□□□□ -0.9
HDAC3-216ENST00000523088 ZRANB2O95218 330 aaKnown RBP eCLIP9.42□□□□□ -0.9
HDAC3-216ENST00000523088 BRD1O95696 1058 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 GCP02774 474 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 EVA1CP58658 441 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 FAM98CQ17RN3 349 aaKnown RBP9.42□□□□□ -0.9
HDAC3-216ENST00000523088 BARGINQ6ZT62 677 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 DDRGK1Q96HY6 314 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 MTA3Q9BTC8 594 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 UBA5Q9GZZ9 404 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 CABP1Q9NZU7 370 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 WNK3Q9BYP7 1800 aa9.42□□□□□ -0.9
HDAC3-216ENST00000523088 COL5A2P05997 1499 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 DISP2A7MBM2 1401 aa9.41□□□□□ -0.9
HDAC3-216ENST00000523088 CPSF1Q10570 1443 aaKnown RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 AATKQ6ZMQ8 1374 aa9.41□□□□□ -0.9
HDAC3-216ENST00000523088 IRF6O14896 467 aa9.41□□□□□ -0.9
HDAC3-216ENST00000523088 BAG6P46379 1132 aa9.41□□□□□ -0.9
HDAC3-216ENST00000523088 MCCD1P59942 119 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 ZC3H6P61129 1189 aaKnown RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 FOXD4L6Q3SYB3 417 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 FOXD4L3Q6VB84 417 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 SPRYD3Q8NCJ5 442 aa9.41□□□□□ -0.9
HDAC3-216ENST00000523088 TNS1Q9HBL0 1735 aaKnown RBP9.41□□□□□ -0.9
HDAC3-216ENST00000523088 CAMTA1Q9Y6Y1 1673 aa9.41□□□□□ -0.9
HDAC3-216ENST00000523088 CRB1P82279 1406 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 KTN1Q86UP2 1357 aaKnown RBP9.4□□□□□ -0.9
HDAC3-216ENST00000523088 PARD3Q8TEW0 1356 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 APBB1O00213 710 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 ZNF500O60304 480 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-216ENST00000523088 LIG1P18858 919 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 TERF1P54274 439 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 NLRP6P59044 892 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 AEBP1Q8IUX7 1158 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 CDCA7Q9BWT1 371 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-216ENST00000523088 STRN4Q9NRL3 753 aa9.4□□□□□ -0.9
HDAC3-216ENST00000523088 CLCN1P35523 988 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 NUTM2GQ5VZR2 741 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 FAM196AQ6ZSG2 479 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 HDGFL2Q7Z4V5 671 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-216ENST00000523088 TCP11L2Q8N4U5 519 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 TSPYL1Q9H0U9 437 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 PNNQ9H307 717 aaKnown RBP9.39□□□□□ -0.91
HDAC3-216ENST00000523088 RGPD3A6NKT7 1758 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-216ENST00000523088 COL18A1P39060 1754 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 RGPD4Q7Z3J3 1758 aa9.39□□□□□ -0.91
HDAC3-216ENST00000523088 EDC4Q6P2E9 1401 aaKnown RBP9.39□□□□□ -0.91
HDAC3-216ENST00000523088 FAM208AQ9UK61 1670 aaKnown RBP9.39□□□□□ -0.91
HDAC3-216ENST00000523088 TTC21BQ7Z4L5 1316 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 LTN1O94822 1766 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 NPM3O75607 178 aaKnown RBP9.38□□□□□ -0.91
HDAC3-216ENST00000523088 PDE3BQ13370 1112 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 CHRNA2Q15822 529 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 CDCA8Q53HL2 280 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 RBM26Q5T8P6 1007 aaKnown RBP9.38□□□□□ -0.91
HDAC3-216ENST00000523088 KRBA2Q6ZNG9 492 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 CACTIN-AS1Q8N1I8 211 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 ARHGEF1Q92888 912 aaKnown RBP9.38□□□□□ -0.91
HDAC3-216ENST00000523088 SPATA32Q96LK8 384 aa9.38□□□□□ -0.91
HDAC3-216ENST00000523088 USP31Q70CQ4 1352 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 NFAT5O94916 1531 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 GSE1Q14687 1217 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 NEUROD2Q15784 382 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 WDR78Q5VTH9 848 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 FAM210AQ96ND0 272 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 GZF1Q9H116 711 aaPredicted RBP9.37□□□□□ -0.91
HDAC3-216ENST00000523088 CEP126Q9P2H0 1117 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 PPME1Q9Y570 386 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 LRRC37A3O60309 1634 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 LRP5O75197 1615 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 RGPD5Q99666 1765 aa9.37□□□□□ -0.91
HDAC3-216ENST00000523088 WDR17Q8IZU2 1322 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 EXOC5O00471 708 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 ARMCX6Q7L4S7 300 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 APBB1IPQ7Z5R6 666 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-216ENST00000523088 BANK1Q8NDB2 785 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 HELBQ8NG08 1087 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-216ENST00000523088 OVOS2A0A0G2JMS6 1433 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 OVOS2A0A0J9YW53 1432 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 OVOS2Q6IE36 1432 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms