RNA–Protein interactions for RNA: ENST00000522900.5

SPIDR-220, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 3

Gene SPIDR, Length 692 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-220ENST00000522900 HMGB2P26583 209 aaKnown RBP25.26■■□□□ 1.63
SPIDR-220ENST00000522900 POLD1P28340 1107 aa25.26■■□□□ 1.63
SPIDR-220ENST00000522900 MSL1Q68DK7 614 aa25.26■■□□□ 1.63
SPIDR-220ENST00000522900 NFATC2IPQ8NCF5 419 aa25.25■■□□□ 1.63
SPIDR-220ENST00000522900 RBM42Q9BTD8 480 aaKnown RBP25.25■■□□□ 1.63
SPIDR-220ENST00000522900 C4BP0C0L5 1744 aa25.25■■□□□ 1.63
SPIDR-220ENST00000522900 TAF1LQ8IZX4 1826 aa25.25■■□□□ 1.63
SPIDR-220ENST00000522900 PHF14O94880 888 aa25.24■■□□□ 1.63
SPIDR-220ENST00000522900 FLAD1Q8NFF5 587 aa25.24■■□□□ 1.63
SPIDR-220ENST00000522900 LGR6Q9HBX8 967 aa25.24■■□□□ 1.63
SPIDR-220ENST00000522900 COL3A1P02461 1466 aaPredicted RBP25.23■■□□□ 1.63
SPIDR-220ENST00000522900 AKAP4Q5JQC9 854 aa25.23■■□□□ 1.63
SPIDR-220ENST00000522900 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.22■■□□□ 1.63
SPIDR-220ENST00000522900 DCAF8L1A6NGE4 600 aa25.22■■□□□ 1.63
SPIDR-220ENST00000522900 MTHFSDQ2M296 383 aaKnown RBP25.22■■□□□ 1.63
SPIDR-220ENST00000522900 KLHL34Q8N239 644 aa25.22■■□□□ 1.63
SPIDR-220ENST00000522900 U2SURPO15042 1029 aaKnown RBP25.21■■□□□ 1.63
SPIDR-220ENST00000522900 COL24A1Q17RW2 1714 aa25.2■■□□□ 1.63
SPIDR-220ENST00000522900 MAP3K5Q99683 1374 aa25.19■■□□□ 1.62
SPIDR-220ENST00000522900 GNPATO15228 680 aa25.19■■□□□ 1.62
SPIDR-220ENST00000522900 PTCD1O75127 700 aaKnown RBP25.19■■□□□ 1.62
SPIDR-220ENST00000522900 RNMTO43148 476 aaKnown RBP25.18■■□□□ 1.62
SPIDR-220ENST00000522900 PPP2R1AP30153 589 aa25.18■■□□□ 1.62
SPIDR-220ENST00000522900 SSFA2P28290 1259 aa25.17■■□□□ 1.62
SPIDR-220ENST00000522900 NLGN2Q8NFZ4 835 aa25.16■■□□□ 1.62
SPIDR-220ENST00000522900 SLC52A2Q9HAB3 445 aa25.16■■□□□ 1.62
SPIDR-220ENST00000522900 CFAP53Q96M91 514 aa25.14■■□□□ 1.62
SPIDR-220ENST00000522900 UBR3Q6ZT12 1888 aa25.13■■□□□ 1.61
SPIDR-220ENST00000522900 YY1P25490 414 aa25.13■■□□□ 1.61
SPIDR-220ENST00000522900 SLC39A6Q13433 755 aa25.12■■□□□ 1.61
SPIDR-220ENST00000522900 RC3H1Q5TC82 1133 aaKnown RBP25.12■■□□□ 1.61
SPIDR-220ENST00000522900 PHACTR3Q96KR7 559 aa25.11■■□□□ 1.61
SPIDR-220ENST00000522900 RTCBQ9Y3I0 505 aaKnown RBP25.11■■□□□ 1.61
SPIDR-220ENST00000522900 TRAPPC3LQ5T215 181 aa25.1■■□□□ 1.61
SPIDR-220ENST00000522900 SCN11AQ9UI33 1791 aa25.1■■□□□ 1.61
SPIDR-220ENST00000522900 CNTNAP4Q9C0A0 1308 aa25.1■■□□□ 1.61
SPIDR-220ENST00000522900 ARHGEF1Q92888 912 aaKnown RBP25.09■■□□□ 1.61
SPIDR-220ENST00000522900 RSPH6AQ9H0K4 717 aa25.09■■□□□ 1.61
SPIDR-220ENST00000522900 RPS6KA4O75676 772 aa25.08■■□□□ 1.61
SPIDR-220ENST00000522900 PRKAR2BP31323 418 aa25.08■■□□□ 1.61
SPIDR-220ENST00000522900 ZNF831Q5JPB2 1677 aa25.07■■□□□ 1.6
SPIDR-220ENST00000522900 CRKLP46109 303 aaKnown RBP25.07■■□□□ 1.6
SPIDR-220ENST00000522900 GPR162Q16538 588 aa25.07■■□□□ 1.6
SPIDR-220ENST00000522900 IL17REQ8NFR9 667 aa25.07■■□□□ 1.6
SPIDR-220ENST00000522900 NUDCQ9Y266 331 aa25.07■■□□□ 1.6
SPIDR-220ENST00000522900 U2AF1L5P0DN76 240 aaPredicted RBP25.06■■□□□ 1.6
SPIDR-220ENST00000522900 U2AF1Q01081 240 aaKnown RBP eCLIP25.06■■□□□ 1.6
SPIDR-220ENST00000522900 DNAJC10Q8IXB1 793 aa25.06■■□□□ 1.6
SPIDR-220ENST00000522900 PELP1Q8IZL8 1130 aaKnown RBP25.06■■□□□ 1.6
SPIDR-220ENST00000522900 GAS2L2Q8NHY3 880 aa25.06■■□□□ 1.6
SPIDR-220ENST00000522900 MRC1P22897 1456 aa25.06■■□□□ 1.6
SPIDR-220ENST00000522900 GNAT3A8MTJ3 354 aa25.05■■□□□ 1.6
SPIDR-220ENST00000522900 INTS5Q6P9B9 1019 aaKnown RBP25.04■■□□□ 1.6
SPIDR-220ENST00000522900 CD2APQ9Y5K6 639 aa25.04■■□□□ 1.6
SPIDR-220ENST00000522900 COL5A3P25940 1745 aaPredicted RBP25.03■■□□□ 1.6
SPIDR-220ENST00000522900 ADRA2BP18089 450 aa25.03■■□□□ 1.6
SPIDR-220ENST00000522900 ADAMTS7Q9UKP4 1686 aa25.03■■□□□ 1.6
SPIDR-220ENST00000522900 MMP10P09238 476 aa25.02■■□□□ 1.6
SPIDR-220ENST00000522900 RFC4P35249 363 aa25.02■■□□□ 1.6
SPIDR-220ENST00000522900 CYP19A1P11511 503 aaPredicted RBP25■■□□□ 1.59
SPIDR-220ENST00000522900 GYS1P13807 737 aa25■■□□□ 1.59
SPIDR-220ENST00000522900 YBX3P16989 372 aaKnown RBP eCLIP25■■□□□ 1.59
SPIDR-220ENST00000522900 TJP1Q07157 1748 aa25■■□□□ 1.59
SPIDR-220ENST00000522900 MYH14Q7Z406 1995 aaKnown RBP25■■□□□ 1.59
SPIDR-220ENST00000522900 FCHSD2O94868 740 aa24.99■■□□□ 1.59
SPIDR-220ENST00000522900 KCPQ6ZWJ8 1503 aa24.99■■□□□ 1.59
SPIDR-220ENST00000522900 NLGN1Q8N2Q7 840 aa24.99■■□□□ 1.59
SPIDR-220ENST00000522900 SRP68Q9UHB9 627 aaKnown RBP24.99■■□□□ 1.59
SPIDR-220ENST00000522900 TEFQ10587 303 aa24.98■■□□□ 1.59
SPIDR-220ENST00000522900 CCDC87Q9NVE4 849 aa24.98■■□□□ 1.59
SPIDR-220ENST00000522900 DDX10Q13206 875 aaKnown RBP24.97■■□□□ 1.59
SPIDR-220ENST00000522900 CEMIPQ8WUJ3 1361 aa24.95■■□□□ 1.59
SPIDR-220ENST00000522900 TTC5Q8N0Z6 440 aa24.95■■□□□ 1.58
SPIDR-220ENST00000522900 VSIG10Q8N0Z9 540 aa24.95■■□□□ 1.58
SPIDR-220ENST00000522900 ZNF496Q96IT1 587 aaPredicted RBP24.95■■□□□ 1.58
SPIDR-220ENST00000522900 CICQ96RK0 1608 aaPredicted RBP24.94■■□□□ 1.58
SPIDR-220ENST00000522900 VIRMAQ69YN4 1812 aaKnown RBP24.94■■□□□ 1.58
SPIDR-220ENST00000522900 ZNF790Q6PG37 636 aa24.94■■□□□ 1.58
SPIDR-220ENST00000522900 WWC3Q9ULE0 1092 aa24.94■■□□□ 1.58
SPIDR-220ENST00000522900 USP42Q9H9J4 1324 aaKnown RBP24.93■■□□□ 1.58
SPIDR-220ENST00000522900 KCNQ3O43525 872 aa24.93■■□□□ 1.58
SPIDR-220ENST00000522900 FKBP8Q14318 412 aa24.93■■□□□ 1.58
SPIDR-220ENST00000522900 MCM10Q7L590 875 aa24.93■■□□□ 1.58
SPIDR-220ENST00000522900 ZBTB1Q9Y2K1 713 aa24.93■■□□□ 1.58
SPIDR-220ENST00000522900 SOS1Q07889 1333 aaPredicted RBP24.92■■□□□ 1.58
SPIDR-220ENST00000522900 DCTN1Q14203 1278 aa24.92■■□□□ 1.58
SPIDR-220ENST00000522900 UTRNP46939 3433 aa24.91■■□□□ 1.58
SPIDR-220ENST00000522900 USPL1Q5W0Q7 1092 aa24.9■■□□□ 1.58
SPIDR-220ENST00000522900 BTBD11A6QL63 1104 aa24.89■■□□□ 1.58
SPIDR-220ENST00000522900 GRIN3BO60391 1043 aa24.89■■□□□ 1.58
SPIDR-220ENST00000522900 CANXP27824 592 aaKnown RBP24.89■■□□□ 1.58
SPIDR-220ENST00000522900 ZNF784Q8NCA9 323 aaPredicted RBP24.89■■□□□ 1.58
SPIDR-220ENST00000522900 PARP3Q9Y6F1 533 aa24.89■■□□□ 1.58
SPIDR-220ENST00000522900 HEG1Q9ULI3 1381 aa24.89■■□□□ 1.57
SPIDR-220ENST00000522900 C4AP0C0L4 1744 aa24.89■■□□□ 1.57
SPIDR-220ENST00000522900 RTF1Q92541 710 aaKnown RBP24.88■■□□□ 1.57
SPIDR-220ENST00000522900 PLEKHF1Q96S99 279 aa24.88■■□□□ 1.57
SPIDR-220ENST00000522900 GOLGB1Q14789 3259 aaKnown RBP24.88■■□□□ 1.57
SPIDR-220ENST00000522900 ZPR1O75312 459 aa24.87■■□□□ 1.57
SPIDR-220ENST00000522900 STARD3NLO95772 234 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms