RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CEMIPQ8WUJ3 1361 aa18.82■□□□□ 0.6
NUP54-216ENST00000514901 CCDC146Q8IYE0 955 aa18.82■□□□□ 0.6
NUP54-216ENST00000514901 CCNL1Q9UK58 526 aaPredicted RBP18.82■□□□□ 0.6
NUP54-216ENST00000514901 TMPOP42166 694 aaKnown RBP18.81■□□□□ 0.6
NUP54-216ENST00000514901 LMOD3Q0VAK6 560 aa18.81■□□□□ 0.6
NUP54-216ENST00000514901 ADAMTS7Q9UKP4 1686 aa18.81■□□□□ 0.6
NUP54-216ENST00000514901 RREB1Q92766 1687 aa18.8■□□□□ 0.6
NUP54-216ENST00000514901 MRC1P22897 1456 aa18.8■□□□□ 0.6
NUP54-216ENST00000514901 LOC102724428A0A0B4J2F2 783 aa18.8■□□□□ 0.6
NUP54-216ENST00000514901 SIK1P57059 783 aa18.8■□□□□ 0.6
NUP54-216ENST00000514901 RIPK4P57078 832 aa18.8■□□□□ 0.6
NUP54-216ENST00000514901 CCER2I3L3R5 266 aa18.79■□□□□ 0.6
NUP54-216ENST00000514901 MCM10Q7L590 875 aa18.79■□□□□ 0.6
NUP54-216ENST00000514901 LRRC4BQ9NT99 713 aa18.79■□□□□ 0.6
NUP54-216ENST00000514901 LY75O60449 1722 aa18.78■□□□□ 0.6
NUP54-216ENST00000514901 STK32BQ9NY57 414 aa18.78■□□□□ 0.6
NUP54-216ENST00000514901 VIRMAQ69YN4 1812 aaKnown RBP18.77■□□□□ 0.6
NUP54-216ENST00000514901 ATP6V1AP38606 617 aa18.76■□□□□ 0.59
NUP54-216ENST00000514901 DCTN1Q14203 1278 aa18.76■□□□□ 0.59
NUP54-216ENST00000514901 TAF7Q15545 349 aaPredicted RBP18.76■□□□□ 0.59
NUP54-216ENST00000514901 RBM42Q9BTD8 480 aaKnown RBP18.76■□□□□ 0.59
NUP54-216ENST00000514901 NUP188Q5SRE5 1749 aa18.76■□□□□ 0.59
NUP54-216ENST00000514901 BTBD11A6QL63 1104 aa18.75■□□□□ 0.59
NUP54-216ENST00000514901 SLC15A2Q16348 729 aa18.75■□□□□ 0.59
NUP54-216ENST00000514901 TTC5Q8N0Z6 440 aa18.75■□□□□ 0.59
NUP54-216ENST00000514901 DLG5Q8TDM6 1919 aa18.74■□□□□ 0.59
NUP54-216ENST00000514901 APAF1O14727 1248 aa18.74■□□□□ 0.59
NUP54-216ENST00000514901 PTCD1O75127 700 aaKnown RBP18.74■□□□□ 0.59
NUP54-216ENST00000514901 KCNQ4P56696 695 aa18.74■□□□□ 0.59
NUP54-216ENST00000514901 SLC39A6Q13433 755 aa18.74■□□□□ 0.59
NUP54-216ENST00000514901 NEUROD2Q15784 382 aa18.74■□□□□ 0.59
NUP54-216ENST00000514901 RRP7AQ9Y3A4 280 aaKnown RBP18.74■□□□□ 0.59
NUP54-216ENST00000514901 R3HDM1Q15032 1099 aaKnown RBP18.73■□□□□ 0.59
NUP54-216ENST00000514901 ZNF790Q6PG37 636 aa18.73■□□□□ 0.59
NUP54-216ENST00000514901 VSIG10Q8N0Z9 540 aa18.73■□□□□ 0.59
NUP54-216ENST00000514901 AKT1S1Q96B36 256 aa18.73■□□□□ 0.59
NUP54-216ENST00000514901 ANO8Q9HCE9 1232 aaPredicted RBP18.73■□□□□ 0.59
NUP54-216ENST00000514901 NCBP3Q53F19 620 aaKnown RBP18.72■□□□□ 0.59
NUP54-216ENST00000514901 FAM9BQ8IZU0 186 aa18.72■□□□□ 0.59
NUP54-216ENST00000514901 BABAM1Q9NWV8 329 aa18.72■□□□□ 0.59
NUP54-216ENST00000514901 SLC4A9Q96Q91 983 aa18.71■□□□□ 0.59
NUP54-216ENST00000514901 TRIM35Q9UPQ4 493 aa18.71■□□□□ 0.59
NUP54-216ENST00000514901 PSDA5PKW4 1024 aaPredicted RBP18.7■□□□□ 0.58
NUP54-216ENST00000514901 ITPK1Q13572 414 aa18.7■□□□□ 0.58
NUP54-216ENST00000514901 FMNL2Q96PY5 1086 aa18.7■□□□□ 0.58
NUP54-216ENST00000514901 TFCP2L1Q9NZI6 479 aa18.7■□□□□ 0.58
NUP54-216ENST00000514901 SIPA1L3O60292 1781 aaPredicted RBP18.7■□□□□ 0.58
NUP54-216ENST00000514901 ZNF831Q5JPB2 1677 aa18.69■□□□□ 0.58
NUP54-216ENST00000514901 CALD1Q05682 793 aaKnown RBP18.69■□□□□ 0.58
NUP54-216ENST00000514901 ZNF827Q17R98 1081 aa18.69■□□□□ 0.58
NUP54-216ENST00000514901 RC3H1Q5TC82 1133 aaKnown RBP18.69■□□□□ 0.58
NUP54-216ENST00000514901 LINC00116Q8NCU8 138 aa18.69■□□□□ 0.58
NUP54-216ENST00000514901 THUMPD2Q9BTF0 503 aaKnown RBP18.69■□□□□ 0.58
NUP54-216ENST00000514901 TEX13AQ9BXU3 409 aaPredicted RBP18.69■□□□□ 0.58
NUP54-216ENST00000514901 PAPPAQ13219 1627 aa18.69■□□□□ 0.58
NUP54-216ENST00000514901 MIER1Q8N108 512 aa18.68■□□□□ 0.58
NUP54-216ENST00000514901 NGEFQ8N5V2 710 aa18.68■□□□□ 0.58
NUP54-216ENST00000514901 ZNF496Q96IT1 587 aaPredicted RBP18.68■□□□□ 0.58
NUP54-216ENST00000514901 AK7Q96M32 723 aa18.68■□□□□ 0.58
NUP54-216ENST00000514901 CCDC27Q2M243 656 aa18.67■□□□□ 0.58
NUP54-216ENST00000514901 FLAD1Q8NFF5 587 aa18.67■□□□□ 0.58
NUP54-216ENST00000514901 TAF1LQ8IZX4 1826 aa18.66■□□□□ 0.58
NUP54-216ENST00000514901 CNTNAP4Q9C0A0 1308 aa18.66■□□□□ 0.58
NUP54-216ENST00000514901 C5P01031 1676 aa18.66■□□□□ 0.58
NUP54-216ENST00000514901 HEG1Q9ULI3 1381 aa18.66■□□□□ 0.58
NUP54-216ENST00000514901 KCPQ6ZWJ8 1503 aa18.65■□□□□ 0.58
NUP54-216ENST00000514901 KCNQ3O43525 872 aa18.65■□□□□ 0.58
NUP54-216ENST00000514901 STARD3NLO95772 234 aa18.65■□□□□ 0.58
NUP54-216ENST00000514901 DNAJC10Q8IXB1 793 aa18.65■□□□□ 0.58
NUP54-216ENST00000514901 MIS18AQ9NYP9 233 aa18.65■□□□□ 0.58
NUP54-216ENST00000514901 TSPYL4Q9UJ04 414 aa18.65■□□□□ 0.58
NUP54-216ENST00000514901 SNRPA1P09661 255 aaKnown RBP18.64■□□□□ 0.57
NUP54-216ENST00000514901 C4BP0C0L5 1744 aa18.63■□□□□ 0.57
NUP54-216ENST00000514901 UBR2Q8IWV8 1755 aa18.63■□□□□ 0.57
NUP54-216ENST00000514901 CHL1O00533 1208 aa18.63■□□□□ 0.57
NUP54-216ENST00000514901 SSFA2P28290 1259 aa18.63■□□□□ 0.57
NUP54-216ENST00000514901 SLC16A10Q8TF71 515 aa18.63■□□□□ 0.57
NUP54-216ENST00000514901 CFAP44Q96MT7 982 aa18.63■□□□□ 0.57
NUP54-216ENST00000514901 RTCBQ9Y3I0 505 aaKnown RBP18.63■□□□□ 0.57
NUP54-216ENST00000514901 GNPATO15228 680 aa18.62■□□□□ 0.57
NUP54-216ENST00000514901 RPS6KA4O75676 772 aa18.62■□□□□ 0.57
NUP54-216ENST00000514901 CYP19A1P11511 503 aaPredicted RBP18.62■□□□□ 0.57
NUP54-216ENST00000514901 CRKLP46109 303 aaKnown RBP18.62■□□□□ 0.57
NUP54-216ENST00000514901 PNPLA7Q6ZV29 1317 aa18.62■□□□□ 0.57
NUP54-216ENST00000514901 CICQ96RK0 1608 aaPredicted RBP18.61■□□□□ 0.57
NUP54-216ENST00000514901 ADRA2BP18089 450 aa18.61■□□□□ 0.57
NUP54-216ENST00000514901 EIF4A1P60842 406 aaKnown RBP18.61■□□□□ 0.57
NUP54-216ENST00000514901 GNAI1P63096 354 aa18.61■□□□□ 0.57
NUP54-216ENST00000514901 WWC1Q8IX03 1113 aa18.61■□□□□ 0.57
NUP54-216ENST00000514901 CCDC87Q9NVE4 849 aa18.61■□□□□ 0.57
NUP54-216ENST00000514901 IFT57Q9NWB7 429 aa18.61■□□□□ 0.57
NUP54-216ENST00000514901 TRAPPC3LQ5T215 181 aa18.6■□□□□ 0.57
NUP54-216ENST00000514901 INTS5Q6P9B9 1019 aaKnown RBP18.6■□□□□ 0.57
NUP54-216ENST00000514901 COL23A1Q86Y22 540 aaPredicted RBP18.6■□□□□ 0.57
NUP54-216ENST00000514901 LAS1LQ9Y4W2 734 aaKnown RBP18.6■□□□□ 0.57
NUP54-216ENST00000514901 QSER1Q2KHR3 1735 aa18.6■□□□□ 0.57
NUP54-216ENST00000514901 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.59■□□□□ 0.57
NUP54-216ENST00000514901 ZNF853P0CG23 659 aa18.59■□□□□ 0.57
NUP54-216ENST00000514901 COL5A3P25940 1745 aaPredicted RBP18.59■□□□□ 0.57
NUP54-216ENST00000514901 IL16Q14005 1332 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms