RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ABCC2Q92887 1545 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 LRSAM1Q6UWE0 723 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 TEX14Q8IWB6 1497 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 CHRNA2Q15822 529 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 AEBP1Q8IUX7 1158 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 MYD88Q99836 296 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 MPHOSPH8Q99549 860 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 PZPP20742 1482 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 AMOTQ4VCS5 1084 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 CCDC73Q6ZRK6 1079 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 PPIP5K1Q6PFW1 1433 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 ASXL1Q8IXJ9 1541 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 RBM25P49756 843 aaKnown RBP15.54■□□□□ 0.08
TCOF1-213ENST00000514442 AK7Q96M32 723 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 TMOD3Q9NYL9 352 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 CCDC192P0DO97 292 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 ATP2B1P20020 1258 aa15.54■□□□□ 0.08
TCOF1-213ENST00000514442 DNMT1P26358 1616 aaKnown RBP15.54■□□□□ 0.08
TCOF1-213ENST00000514442 PDIA4P13667 645 aaKnown RBP15.53■□□□□ 0.08
TCOF1-213ENST00000514442 NOLC1Q14978 699 aaKnown RBP eCLIP15.53■□□□□ 0.08
TCOF1-213ENST00000514442 SHANK2Q9UPX8 1470 aa15.53■□□□□ 0.08
TCOF1-213ENST00000514442 SMC5Q8IY18 1101 aa15.53■□□□□ 0.08
TCOF1-213ENST00000514442 CTDP1Q9Y5B0 961 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-213ENST00000514442 TTC21BQ7Z4L5 1316 aa15.53■□□□□ 0.08
TCOF1-213ENST00000514442 LEKR1Q6ZMV7 388 aa15.53■□□□□ 0.08
TCOF1-213ENST00000514442 CYP46A1Q9Y6A2 500 aa15.53■□□□□ 0.08
TCOF1-213ENST00000514442 WDR33Q9C0J8 1336 aaKnown RBP15.53■□□□□ 0.08
TCOF1-213ENST00000514442 CEP126Q9P2H0 1117 aa15.52■□□□□ 0.08
TCOF1-213ENST00000514442 RBM27Q9P2N5 1060 aaKnown RBP15.52■□□□□ 0.08
TCOF1-213ENST00000514442 FIBPO43427 364 aa15.52■□□□□ 0.08
TCOF1-213ENST00000514442 LRRFIP2Q9Y608 721 aaKnown RBP15.52■□□□□ 0.08
TCOF1-213ENST00000514442 CEBPZQ03701 1054 aaKnown RBP15.52■□□□□ 0.07
TCOF1-213ENST00000514442 NCKAP5LQ9HCH0 1330 aa15.52■□□□□ 0.07
TCOF1-213ENST00000514442 UVSSAQ2YD98 709 aa15.51■□□□□ 0.07
TCOF1-213ENST00000514442 USP25Q9UHP3 1055 aa15.51■□□□□ 0.07
TCOF1-213ENST00000514442 ANKRD24Q8TF21 1146 aa15.51■□□□□ 0.07
TCOF1-213ENST00000514442 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.51■□□□□ 0.072e-6■■■■□ 19.4
TCOF1-213ENST00000514442 ANXA1P04083 346 aa15.51■□□□□ 0.07
TCOF1-213ENST00000514442 FLIIQ13045 1269 aa15.51■□□□□ 0.07
TCOF1-213ENST00000514442 SART3Q15020 963 aaKnown RBP15.51■□□□□ 0.07
TCOF1-213ENST00000514442 STARD3NLO95772 234 aa15.5■□□□□ 0.07
TCOF1-213ENST00000514442 UTP14CQ5TAP6 766 aaKnown RBP15.5■□□□□ 0.07
TCOF1-213ENST00000514442 MX1P20591 662 aa15.5■□□□□ 0.07
TCOF1-213ENST00000514442 DMTNQ08495 405 aa15.5■□□□□ 0.07
TCOF1-213ENST00000514442 DNAAF4Q8WXU2 420 aa15.5■□□□□ 0.07
TCOF1-213ENST00000514442 CARD14Q9BXL6 1004 aa15.5■□□□□ 0.07
TCOF1-213ENST00000514442 CEP170Q5SW79 1584 aa15.5■□□□□ 0.07
TCOF1-213ENST00000514442 GNL3LQ9NVN8 582 aaKnown RBP15.5■□□□□ 0.07
TCOF1-213ENST00000514442 IRX3P78415 501 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-213ENST00000514442 LARP1Q6PKG0 1096 aaKnown RBP15.49■□□□□ 0.07
TCOF1-213ENST00000514442 TCEAL9Q9UHQ7 104 aa15.49■□□□□ 0.07
TCOF1-213ENST00000514442 PARD3Q8TEW0 1356 aa15.49■□□□□ 0.07
TCOF1-213ENST00000514442 JAKMIP1Q96N16 626 aaKnown RBP15.49■□□□□ 0.07
TCOF1-213ENST00000514442 ADCY5O95622 1261 aa15.49■□□□□ 0.07
TCOF1-213ENST00000514442 PRIM1P49642 420 aaKnown RBP15.49■□□□□ 0.07
TCOF1-213ENST00000514442 NOC3LQ8WTT2 800 aaKnown RBP15.48■□□□□ 0.07
TCOF1-213ENST00000514442 KIF1BPQ96EK5 621 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 PPP1R9BQ96SB3 815 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 CCDC183Q5T5S1 534 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 PCMTD1Q96MG8 357 aaPredicted RBP15.48■□□□□ 0.07
TCOF1-213ENST00000514442 TRERF1Q96PN7 1200 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 FEZ1Q99689 392 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 ACBD3Q9H3P7 528 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 HSP90B2PQ58FF3 399 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 KRT222Q8N1A0 295 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 MYRIPQ8NFW9 859 aa15.48■□□□□ 0.07
TCOF1-213ENST00000514442 TSR1Q2NL82 804 aaKnown RBP15.47■□□□□ 0.07
TCOF1-213ENST00000514442 PPP1R1BQ9UD71 204 aaPredicted RBP15.47■□□□□ 0.07
TCOF1-213ENST00000514442 SDF4Q9BRK5 362 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 BOLA2Q9H3K6 86 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 OGFRQ9NZT2 677 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 MAGI3Q5TCQ9 1506 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 PLCD3Q8N3E9 789 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 CCDC8Q9H0W5 538 aaPredicted RBP15.47■□□□□ 0.07
TCOF1-213ENST00000514442 ZBTB3Q9H5J0 574 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 POLKQ9UBT6 870 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 DBF4Q9UBU7 674 aaPredicted RBP15.47■□□□□ 0.07
TCOF1-213ENST00000514442 HOOK1Q9UJC3 728 aaKnown RBP15.47■□□□□ 0.07
TCOF1-213ENST00000514442 SAMD9Q5K651 1589 aa15.47■□□□□ 0.07
TCOF1-213ENST00000514442 CALRP27797 417 aaKnown RBP15.47■□□□□ 0.07
TCOF1-213ENST00000514442 ZNF500O60304 480 aaPredicted RBP15.46■□□□□ 0.07
TCOF1-213ENST00000514442 IDH1O75874 414 aaKnown RBP15.46■□□□□ 0.07
TCOF1-213ENST00000514442 IKQ13123 557 aaPredicted RBP15.46■□□□□ 0.07
TCOF1-213ENST00000514442 EIF2AK4Q9P2K8 1649 aaKnown RBP15.46■□□□□ 0.07
TCOF1-213ENST00000514442 TPM1P09493 284 aa15.46■□□□□ 0.07
TCOF1-213ENST00000514442 EIF4A2Q14240 407 aaKnown RBP15.46■□□□□ 0.07
TCOF1-213ENST00000514442 METTL24Q5JXM2 366 aa15.46■□□□□ 0.07
TCOF1-213ENST00000514442 BLOC1S2Q6QNY1 142 aa15.46■□□□□ 0.07
TCOF1-213ENST00000514442 DEF6Q9H4E7 631 aa15.46■□□□□ 0.07
TCOF1-213ENST00000514442 BRMS1Q9HCU9 246 aa15.46■□□□□ 0.07
TCOF1-213ENST00000514442 MAP3K2Q9Y2U5 619 aa15.46■□□□□ 0.07
TCOF1-213ENST00000514442 TNNT1P13805 278 aa15.46■□□□□ 0.06
TCOF1-213ENST00000514442 ZNF830Q96NB3 372 aaPredicted RBP15.46■□□□□ 0.06
TCOF1-213ENST00000514442 CCP110O43303 1012 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 JARID2Q92833 1246 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-213ENST00000514442 PDRG1Q9NUG6 133 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 XBP1P17861 261 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 PDCP20941 246 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 CCDC47Q96A33 483 aaKnown RBP15.45■□□□□ 0.06
TCOF1-213ENST00000514442 IGSF3O75054 1194 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms