RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 IL17REQ8NFR9 667 aa13.02□□□□□ -0.33
RNF4-221ENST00000513643 SLC52A2Q9HAB3 445 aa13.02□□□□□ -0.33
RNF4-221ENST00000513643 U2AF1L5P0DN76 240 aaPredicted RBP13.01□□□□□ -0.33
RNF4-221ENST00000513643 U2AF1Q01081 240 aaKnown RBP eCLIP13.01□□□□□ -0.33
RNF4-221ENST00000513643 GAS2L2Q8NHY3 880 aa13.01□□□□□ -0.33
RNF4-221ENST00000513643 PLEKHF1Q96S99 279 aa13.01□□□□□ -0.33
RNF4-221ENST00000513643 SPON1Q9HCB6 807 aa13.01□□□□□ -0.33
RNF4-221ENST00000513643 CEMIPQ8WUJ3 1361 aa13.01□□□□□ -0.33
RNF4-221ENST00000513643 AMIGO3Q86WK7 504 aa13□□□□□ -0.33
RNF4-221ENST00000513643 LINC00116Q8NCU8 138 aa13□□□□□ -0.33
RNF4-221ENST00000513643 SLC16A10Q8TF71 515 aa13□□□□□ -0.33
RNF4-221ENST00000513643 MTFR1LQ9H019 292 aa13□□□□□ -0.33
RNF4-221ENST00000513643 PRKRIP1Q9H875 184 aaPredicted RBP13□□□□□ -0.33
RNF4-221ENST00000513643 SCN11AQ9UI33 1791 aa12.99□□□□□ -0.33
RNF4-221ENST00000513643 QSER1Q2KHR3 1735 aa12.99□□□□□ -0.33
RNF4-221ENST00000513643 ZNF831Q5JPB2 1677 aa12.99□□□□□ -0.33
RNF4-221ENST00000513643 MYBBP1AQ9BQG0 1328 aaKnown RBP12.99□□□□□ -0.33
RNF4-221ENST00000513643 GNAT3A8MTJ3 354 aa12.99□□□□□ -0.33
RNF4-221ENST00000513643 COL23A1Q86Y22 540 aaPredicted RBP12.99□□□□□ -0.33
RNF4-221ENST00000513643 TFCP2L1Q9NZI6 479 aa12.99□□□□□ -0.33
RNF4-221ENST00000513643 MAP3K5Q99683 1374 aa12.98□□□□□ -0.33
RNF4-221ENST00000513643 TAF1LQ8IZX4 1826 aa12.98□□□□□ -0.33
RNF4-221ENST00000513643 ZNF316A6NFI3 1004 aaPredicted RBP12.98□□□□□ -0.33
RNF4-221ENST00000513643 ZBTB7AO95365 584 aa12.98□□□□□ -0.33
RNF4-221ENST00000513643 RC3H1Q5TC82 1133 aaKnown RBP12.98□□□□□ -0.33
RNF4-221ENST00000513643 HTATSF1O43719 755 aaKnown RBP12.97□□□□□ -0.33
RNF4-221ENST00000513643 ATP6V1AP38606 617 aa12.97□□□□□ -0.33
RNF4-221ENST00000513643 COL24A1Q17RW2 1714 aa12.96□□□□□ -0.33
RNF4-221ENST00000513643 FLAD1Q8NFF5 587 aa12.96□□□□□ -0.33
RNF4-221ENST00000513643 ATF5Q9Y2D1 282 aaPredicted RBP12.96□□□□□ -0.33
RNF4-221ENST00000513643 C4BP0C0L5 1744 aa12.96□□□□□ -0.34
RNF4-221ENST00000513643 C5P01031 1676 aa12.96□□□□□ -0.34
RNF4-221ENST00000513643 CNTNAP4Q9C0A0 1308 aa12.95□□□□□ -0.34
RNF4-221ENST00000513643 SSFA2P28290 1259 aa12.95□□□□□ -0.34
RNF4-221ENST00000513643 CICQ96RK0 1608 aaPredicted RBP12.95□□□□□ -0.34
RNF4-221ENST00000513643 TUBGCP6Q96RT7 1819 aa12.95□□□□□ -0.34
RNF4-221ENST00000513643 KCPQ6ZWJ8 1503 aa12.94□□□□□ -0.34
RNF4-221ENST00000513643 SLC39A6Q13433 755 aa12.94□□□□□ -0.34
RNF4-221ENST00000513643 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
RNF4-221ENST00000513643 UTRNP46939 3433 aa12.94□□□□□ -0.34
RNF4-221ENST00000513643 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.93□□□□□ -0.34
RNF4-221ENST00000513643 PTCD1O75127 700 aaKnown RBP12.93□□□□□ -0.34
RNF4-221ENST00000513643 INTS5Q6P9B9 1019 aaKnown RBP12.93□□□□□ -0.34
RNF4-221ENST00000513643 AK7Q96M32 723 aa12.93□□□□□ -0.34
RNF4-221ENST00000513643 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
RNF4-221ENST00000513643 GOLGB1Q14789 3259 aaKnown RBP12.92□□□□□ -0.34
RNF4-221ENST00000513643 RPS6KA4O75676 772 aa12.92□□□□□ -0.34
RNF4-221ENST00000513643 ZNF790Q6PG37 636 aa12.92□□□□□ -0.34
RNF4-221ENST00000513643 UBR3Q6ZT12 1888 aa12.92□□□□□ -0.34
RNF4-221ENST00000513643 SMIM5Q71RC9 77 aa12.92□□□□□ -0.34
RNF4-221ENST00000513643 MYH14Q7Z406 1995 aaKnown RBP12.91□□□□□ -0.34
RNF4-221ENST00000513643 CYP19A1P11511 503 aaPredicted RBP12.91□□□□□ -0.34
RNF4-221ENST00000513643 ADRA2BP18089 450 aa12.91□□□□□ -0.34
RNF4-221ENST00000513643 NFE2L2Q16236 605 aa12.91□□□□□ -0.34
RNF4-221ENST00000513643 PNNQ9H307 717 aaKnown RBP12.91□□□□□ -0.34
RNF4-221ENST00000513643 SIPA1L3O60292 1781 aaPredicted RBP12.91□□□□□ -0.34
RNF4-221ENST00000513643 COL5A3P25940 1745 aaPredicted RBP12.91□□□□□ -0.34
RNF4-221ENST00000513643 GNPATO15228 680 aa12.9□□□□□ -0.34
RNF4-221ENST00000513643 CRKLP46109 303 aaKnown RBP12.9□□□□□ -0.34
RNF4-221ENST00000513643 TEFQ10587 303 aa12.9□□□□□ -0.34
RNF4-221ENST00000513643 MCM10Q7L590 875 aa12.9□□□□□ -0.34
RNF4-221ENST00000513643 DNAJC10Q8IXB1 793 aa12.9□□□□□ -0.34
RNF4-221ENST00000513643 ZNF496Q96IT1 587 aaPredicted RBP12.9□□□□□ -0.34
RNF4-221ENST00000513643 ARXQ96QS3 562 aa12.9□□□□□ -0.34
RNF4-221ENST00000513643 UBR2Q8IWV8 1755 aa12.89□□□□□ -0.35
RNF4-221ENST00000513643 KCNQ3O43525 872 aa12.89□□□□□ -0.35
RNF4-221ENST00000513643 DCTN1Q14203 1278 aa12.89□□□□□ -0.35
RNF4-221ENST00000513643 ARHGEF1Q92888 912 aaKnown RBP12.89□□□□□ -0.35
RNF4-221ENST00000513643 SYT17Q9BSW7 474 aa12.89□□□□□ -0.35
RNF4-221ENST00000513643 ADAMTS8Q9UP79 889 aa12.89□□□□□ -0.35
RNF4-221ENST00000513643 RTCBQ9Y3I0 505 aaKnown RBP12.89□□□□□ -0.35
RNF4-221ENST00000513643 TJP1Q07157 1748 aa12.88□□□□□ -0.35
RNF4-221ENST00000513643 VIRMAQ69YN4 1812 aaKnown RBP12.88□□□□□ -0.35
RNF4-221ENST00000513643 TAF7Q15545 349 aaPredicted RBP12.88□□□□□ -0.35
RNF4-221ENST00000513643 TRAPPC3LQ5T215 181 aa12.88□□□□□ -0.35
RNF4-221ENST00000513643 RTF1Q92541 710 aaKnown RBP12.88□□□□□ -0.35
RNF4-221ENST00000513643 FHDC1Q9C0D6 1143 aaPredicted RBP12.88□□□□□ -0.35
RNF4-221ENST00000513643 HEG1Q9ULI3 1381 aa12.88□□□□□ -0.35
RNF4-221ENST00000513643 BTBD11A6QL63 1104 aa12.87□□□□□ -0.35
RNF4-221ENST00000513643 TMPOP42166 694 aaKnown RBP12.87□□□□□ -0.35
RNF4-221ENST00000513643 CCDC184Q52MB2 194 aa12.87□□□□□ -0.35
RNF4-221ENST00000513643 PPP1R1BQ9UD71 204 aaPredicted RBP12.87□□□□□ -0.35
RNF4-221ENST00000513643 SOS1Q07889 1333 aaPredicted RBP12.87□□□□□ -0.35
RNF4-221ENST00000513643 PHF14O94880 888 aa12.86□□□□□ -0.35
RNF4-221ENST00000513643 GYS1P13807 737 aa12.86□□□□□ -0.35
RNF4-221ENST00000513643 POLD1P28340 1107 aa12.86□□□□□ -0.35
RNF4-221ENST00000513643 TTC5Q8N0Z6 440 aa12.86□□□□□ -0.35
RNF4-221ENST00000513643 TEX13AQ9BXU3 409 aaPredicted RBP12.86□□□□□ -0.35
RNF4-221ENST00000513643 CCDC87Q9NVE4 849 aa12.86□□□□□ -0.35
RNF4-221ENST00000513643 NEFMP07197 916 aa12.85□□□□□ -0.35
RNF4-221ENST00000513643 EIF5P55010 431 aaKnown RBP12.85□□□□□ -0.35
RNF4-221ENST00000513643 RUNDC1Q96C34 613 aa12.85□□□□□ -0.35
RNF4-221ENST00000513643 FMNL2Q96PY5 1086 aa12.85□□□□□ -0.35
RNF4-221ENST00000513643 MSH5O43196 834 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 STARD3NLO95772 234 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 RIPK4P57078 832 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 MSL1Q68DK7 614 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 NLGN1Q8N2Q7 840 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 BABAM1Q9NWV8 329 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 TRIM35Q9UPQ4 493 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms