RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 LINC00116Q8NCU8 138 aa19.49■□□□□ 0.71
SPCS3-204ENST00000513139 ANKRD26Q9UPS8 1709 aa19.48■□□□□ 0.71
SPCS3-204ENST00000513139 TGFB2P61812 414 aa19.48■□□□□ 0.71
SPCS3-204ENST00000513139 SMIM5Q71RC9 77 aa19.48■□□□□ 0.71
SPCS3-204ENST00000513139 SPG7Q9UQ90 795 aa19.48■□□□□ 0.71
SPCS3-204ENST00000513139 PXDNLA1KZ92 1463 aa19.48■□□□□ 0.71
SPCS3-204ENST00000513139 ZNF831Q5JPB2 1677 aa19.47■□□□□ 0.71
SPCS3-204ENST00000513139 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.47■□□□□ 0.715e-6■■□□□ 13.2
SPCS3-204ENST00000513139 WDR90Q96KV7 1748 aa19.47■□□□□ 0.71
SPCS3-204ENST00000513139 ARFGEF1Q9Y6D6 1849 aa19.46■□□□□ 0.71
SPCS3-204ENST00000513139 GNPATO15228 680 aa19.46■□□□□ 0.71
SPCS3-204ENST00000513139 MMP10P09238 476 aa19.45■□□□□ 0.7
SPCS3-204ENST00000513139 TMOD3Q9NYL9 352 aa19.45■□□□□ 0.7
SPCS3-204ENST00000513139 ATP6V1AP38606 617 aa19.44■□□□□ 0.7
SPCS3-204ENST00000513139 ITPK1Q13572 414 aa19.44■□□□□ 0.7
SPCS3-204ENST00000513139 SLC4A2P04920 1241 aa19.43■□□□□ 0.7
SPCS3-204ENST00000513139 TMF1P82094 1093 aa19.43■□□□□ 0.7
SPCS3-204ENST00000513139 NLGN1Q8N2Q7 840 aa19.43■□□□□ 0.7
SPCS3-204ENST00000513139 ASAP1Q9ULH1 1129 aa19.43■□□□□ 0.7
SPCS3-204ENST00000513139 PCNTO95613 3336 aa19.43■□□□□ 0.7
SPCS3-204ENST00000513139 C10orf71Q711Q0 1435 aa19.42■□□□□ 0.7
SPCS3-204ENST00000513139 TRIM26Q12899 539 aaPredicted RBP19.42■□□□□ 0.7
SPCS3-204ENST00000513139 BCS1LQ9Y276 419 aa19.42■□□□□ 0.7
SPCS3-204ENST00000513139 C4AP0C0L4 1744 aa19.42■□□□□ 0.7
SPCS3-204ENST00000513139 COL5A3P25940 1745 aaPredicted RBP19.42■□□□□ 0.7
SPCS3-204ENST00000513139 EMILIN1Q9Y6C2 1016 aa19.41■□□□□ 0.7
SPCS3-204ENST00000513139 A0A0G2JLW4 131 aa19.4■□□□□ 0.7
SPCS3-204ENST00000513139 TRAPPC3LQ5T215 181 aa19.4■□□□□ 0.7
SPCS3-204ENST00000513139 IFNL2Q8IZJ0 200 aa19.4■□□□□ 0.7
SPCS3-204ENST00000513139 RBM46Q8TBY0 533 aaKnown RBP19.4■□□□□ 0.7
SPCS3-204ENST00000513139 RTCBQ9Y3I0 505 aaKnown RBP19.4■□□□□ 0.7
SPCS3-204ENST00000513139 PLEKHG2Q9H7P9 1386 aa19.4■□□□□ 0.7
SPCS3-204ENST00000513139 CDCA8Q53HL2 280 aa19.39■□□□□ 0.69
SPCS3-204ENST00000513139 ARHGAP27Q6ZUM4 889 aa19.39■□□□□ 0.69
SPCS3-204ENST00000513139 NMRK2Q9NPI5 230 aa19.39■□□□□ 0.69
SPCS3-204ENST00000513139 ATG3Q9NT62 314 aa19.39■□□□□ 0.69
SPCS3-204ENST00000513139 WASHC2AQ641Q2 1341 aa19.39■□□□□ 0.69
SPCS3-204ENST00000513139 MYH14Q7Z406 1995 aaKnown RBP19.39■□□□□ 0.69
SPCS3-204ENST00000513139 SBF1O95248 1867 aa19.38■□□□□ 0.69
SPCS3-204ENST00000513139 PHKG2P15735 406 aa19.38■□□□□ 0.69
SPCS3-204ENST00000513139 KDRP35968 1356 aa19.38■□□□□ 0.69
SPCS3-204ENST00000513139 RC3H1Q5TC82 1133 aaKnown RBP19.38■□□□□ 0.69
SPCS3-204ENST00000513139 CCDC87Q9NVE4 849 aa19.38■□□□□ 0.69
SPCS3-204ENST00000513139 EYA1Q99502 592 aa19.37■□□□□ 0.69
SPCS3-204ENST00000513139 FCHSD2O94868 740 aa19.36■□□□□ 0.69
SPCS3-204ENST00000513139 DPEP1P16444 411 aa19.36■□□□□ 0.69
SPCS3-204ENST00000513139 FSTL1Q12841 308 aa19.36■□□□□ 0.69
SPCS3-204ENST00000513139 PPM1GO15355 546 aaPredicted RBP19.35■□□□□ 0.69
SPCS3-204ENST00000513139 C16orf71Q8IYS4 520 aaPredicted RBP19.35■□□□□ 0.69
SPCS3-204ENST00000513139 JMYQ8N9B5 988 aa19.35■□□□□ 0.69
SPCS3-204ENST00000513139 ARHGEF1Q92888 912 aaKnown RBP19.35■□□□□ 0.69
SPCS3-204ENST00000513139 KLRG1Q96E93 195 aa19.35■□□□□ 0.69
SPCS3-204ENST00000513139 CARD14Q9BXL6 1004 aa19.35■□□□□ 0.69
SPCS3-204ENST00000513139 TNRC6CQ9HCJ0 1690 aaKnown RBP19.35■□□□□ 0.69
SPCS3-204ENST00000513139 CNTNAP4Q9C0A0 1308 aa19.34■□□□□ 0.69
SPCS3-204ENST00000513139 ERVV-2B6SEH9 535 aa19.34■□□□□ 0.69
SPCS3-204ENST00000513139 GYS1P13807 737 aa19.34■□□□□ 0.69
SPCS3-204ENST00000513139 PARP3Q9Y6F1 533 aa19.34■□□□□ 0.69
SPCS3-204ENST00000513139 RPS6KA4O75676 772 aa19.33■□□□□ 0.68
SPCS3-204ENST00000513139 KCNA3P22001 575 aa19.33■□□□□ 0.68
SPCS3-204ENST00000513139 RFC4P35249 363 aa19.33■□□□□ 0.68
SPCS3-204ENST00000513139 C9orf131Q5VYM1 1079 aa19.33■□□□□ 0.68
SPCS3-204ENST00000513139 SLC4A9Q96Q91 983 aa19.33■□□□□ 0.68
SPCS3-204ENST00000513139 KDM2BQ8NHM5 1336 aa19.32■□□□□ 0.68
SPCS3-204ENST00000513139 PIM2Q9P1W9 311 aa19.32■□□□□ 0.68
SPCS3-204ENST00000513139 HSP90AB1P08238 724 aaKnown RBP19.3■□□□□ 0.68
SPCS3-204ENST00000513139 DCAF5Q96JK2 942 aa19.3■□□□□ 0.68
SPCS3-204ENST00000513139 RBM42Q9BTD8 480 aaKnown RBP19.3■□□□□ 0.68
SPCS3-204ENST00000513139 POLKQ9UBT6 870 aa19.29■□□□□ 0.68
SPCS3-204ENST00000513139 KCPQ6ZWJ8 1503 aa19.29■□□□□ 0.68
SPCS3-204ENST00000513139 DALRD3Q5D0E6 543 aaKnown RBP19.28■□□□□ 0.68
SPCS3-204ENST00000513139 COL13A1Q5TAT6 717 aaPredicted RBP19.28■□□□□ 0.68
SPCS3-204ENST00000513139 POTEDQ86YR6 584 aa19.27■□□□□ 0.68
SPCS3-204ENST00000513139 MYCNP04198 464 aaPredicted RBP19.26■□□□□ 0.67
SPCS3-204ENST00000513139 HTRA3P83110 453 aa19.26■□□□□ 0.67
SPCS3-204ENST00000513139 EIF4A2Q14240 407 aaKnown RBP19.26■□□□□ 0.67
SPCS3-204ENST00000513139 PCGF6Q9BYE7 350 aa19.26■□□□□ 0.67
SPCS3-204ENST00000513139 CCDC88AQ3V6T2 1871 aa19.25■□□□□ 0.67
SPCS3-204ENST00000513139 RNF181Q9P0P0 153 aa19.25■□□□□ 0.67
SPCS3-204ENST00000513139 ZC3H4Q9UPT8 1303 aaKnown RBP19.25■□□□□ 0.67
SPCS3-204ENST00000513139 SMC1BQ8NDV3 1235 aa19.24■□□□□ 0.67
SPCS3-204ENST00000513139 RRAGCQ9HB90 399 aa19.24■□□□□ 0.67
SPCS3-204ENST00000513139 USP42Q9H9J4 1324 aaKnown RBP19.24■□□□□ 0.67
SPCS3-204ENST00000513139 ADAMTS7Q9UKP4 1686 aa19.24■□□□□ 0.67
SPCS3-204ENST00000513139 TJP1Q07157 1748 aa19.23■□□□□ 0.67
SPCS3-204ENST00000513139 CABP4P57796 275 aa19.23■□□□□ 0.67
SPCS3-204ENST00000513139 PLEKHO1Q53GL0 409 aaPredicted RBP19.23■□□□□ 0.67
SPCS3-204ENST00000513139 KDM6AO15550 1401 aaPredicted RBP19.23■□□□□ 0.67
SPCS3-204ENST00000513139 CRKLP46109 303 aaKnown RBP19.22■□□□□ 0.67
SPCS3-204ENST00000513139 AMOTQ4VCS5 1084 aa19.22■□□□□ 0.67
SPCS3-204ENST00000513139 AFDNP55196 1824 aaKnown RBP19.22■□□□□ 0.67
SPCS3-204ENST00000513139 SCN11AQ9UI33 1791 aa19.21■□□□□ 0.67
SPCS3-204ENST00000513139 DLEC1Q9Y238 1755 aa19.21■□□□□ 0.67
SPCS3-204ENST00000513139 DDR1Q08345 913 aa19.21■□□□□ 0.67
SPCS3-204ENST00000513139 FKBP8Q14318 412 aa19.21■□□□□ 0.67
SPCS3-204ENST00000513139 TNS4Q8IZW8 715 aa19.21■□□□□ 0.67
SPCS3-204ENST00000513139 PRELPP51888 382 aa19.2■□□□□ 0.66
SPCS3-204ENST00000513139 PTCD1O75127 700 aaKnown RBP19.19■□□□□ 0.66
SPCS3-204ENST00000513139 TM4SF1P30408 202 aa19.19■□□□□ 0.66
SPCS3-204ENST00000513139 CHRNA5P30532 468 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms