RNA–Protein interactions for RNA: ENST00000493792.1

TRAPPC12-222, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-222	ENST00000493792	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.96	□□□□□ -0.17
TRAPPC12-222	ENST00000493792	FLAD1	Q8NFF5	587 aa		13.96	□□□□□ -0.17
TRAPPC12-222	ENST00000493792	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.95	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	IFNL2	Q8IZJ0	200 aa		13.95	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	NUDC	Q9Y266	331 aa		13.95	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	TUBGCP6	Q96RT7	1819 aa		13.94	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	PHKG2	P15735	406 aa		13.94	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	AMOT	Q4VCS5	1084 aa		13.94	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	C1orf141	Q5JVX7	400 aa		13.94	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	SMIM5	Q71RC9	77 aa		13.94	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	WWC3	Q9ULE0	1092 aa		13.94	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	COL3A1	P02461	1466 aa	Predicted RBP	13.93	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	NKX1-1	Q15270	411 aa	Predicted RBP	13.93	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	MPRIP	Q6WCQ1	1025 aa		13.93	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	LY75	O60449	1722 aa		13.93	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.92	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	HMGB2	P26583	209 aa	Known RBP	13.92	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	APLP1	P51693	650 aa		13.92	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	RALBP1	Q15311	655 aa		13.92	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	KDR	P35968	1356 aa		13.92	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	HSP90AB1	P08238	724 aa	Known RBP	13.91	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.9	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	TOMM70	O94826	608 aa		13.9	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	TMOD3	Q9NYL9	352 aa		13.9	□□□□□ -0.18
TRAPPC12-222	ENST00000493792	PALLD	Q8WX93	1383 aa		13.89	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	PLEKHG2	Q9H7P9	1386 aa		13.89	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	PIGB	Q92521	554 aa		13.89	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	SMARCC1	Q92922	1105 aa	Predicted RBP	13.89	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	TOGARAM1	Q9Y4F4	1720 aa		13.89	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.89	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	ITGB4	P16144	1822 aa		13.88	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	PRKAR2B	P31323	418 aa		13.88	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	DCAF5	Q96JK2	942 aa		13.88	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	CABP4	P57796	275 aa		13.87	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	MTHFSD	Q2M296	383 aa	Known RBP	13.87	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	AKAP4	Q5JQC9	854 aa		13.87	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.87	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	PHF14	O94880	888 aa		13.86	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	NEFM	P07197	916 aa		13.86	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	AK7	Q96M32	723 aa		13.86	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	SSFA2	P28290	1259 aa		13.85	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	JMY	Q8N9B5	988 aa		13.85	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	LINC00116	Q8NCU8	138 aa		13.85	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	GAS2L2	Q8NHY3	880 aa		13.85	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	NMRK2	Q9NPI5	230 aa		13.85	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	KDM6A	O15550	1401 aa	Predicted RBP	13.84	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	ERVV-2	B6SEH9	535 aa		13.84	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	HTRA3	P83110	453 aa		13.84	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	RSPH6A	Q9H0K4	717 aa		13.84	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.84	□□□□□ -0.19
TRAPPC12-222	ENST00000493792	LOC102724428	A0A0B4J2F2	783 aa		13.83	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	FCHSD2	O94868	740 aa		13.83	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	SIK1	P57059	783 aa		13.83	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	PHACTR3	Q96KR7	559 aa		13.83	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	RBM42	Q9BTD8	480 aa	Known RBP	13.83	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	ASAP1	Q9ULH1	1129 aa		13.83	□□□□□ -0.2
TRAPPC12-222	ENST00000493792		A0A0G2JLW4	131 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	RNMT	O43148	476 aa	Known RBP	13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	MMP10	P09238	476 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	TGFB2	P61812	414 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	ITPK1	Q13572	414 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	NFATC2IP	Q8NCF5	419 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	KLRG1	Q96E93	195 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	LGR6	Q9HBX8	967 aa		13.82	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	GNAT3	A8MTJ3	354 aa		13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	WDR43	Q15061	677 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	RBM46	Q8TBY0	533 aa	Known RBP	13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	ATG3	Q9NT62	314 aa		13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	MAPK8IP3	Q9UPT6	1336 aa		13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	C5	P01031	1676 aa		13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	SCN11A	Q9UI33	1791 aa		13.81	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	PCNT	O95613	3336 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	ANP32C	O43423	234 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	KCNA3	P22001	575 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	TEF	Q10587	303 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	ARHGAP27	Q6ZUM4	889 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	RTF1	Q92541	710 aa	Known RBP	13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	PNN	Q9H307	717 aa	Known RBP	13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	BCS1L	Q9Y276	419 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	PXDNL	A1KZ92	1463 aa		13.8	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	GNPAT	O15228	680 aa		13.79	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	PTCD1	O75127	700 aa	Known RBP	13.79	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	DPEP1	P16444	411 aa		13.79	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	ATP6V1A	P38606	617 aa		13.79	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	SLC52A2	Q9HAB3	445 aa		13.79	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	CIC	Q96RK0	1608 aa	Predicted RBP	13.79	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	C4B	P0C0L5	1744 aa		13.78	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	VIRMA	Q69YN4	1812 aa	Known RBP	13.78	□□□□□ -0.2
TRAPPC12-222	ENST00000493792	FSTL1	Q12841	308 aa		13.77	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	C9orf131	Q5VYM1	1079 aa		13.77	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	NLGN1	Q8N2Q7	840 aa		13.77	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	SLC4A9	Q96Q91	983 aa		13.77	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	TAF1L	Q8IZX4	1826 aa		13.76	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	PRELP	P51888	382 aa		13.76	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	SLC39A6	Q13433	755 aa		13.76	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	TRAPPC3L	Q5T215	181 aa		13.76	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	MCM10	Q7L590	875 aa		13.76	□□□□□ -0.21
TRAPPC12-222	ENST00000493792	IL17RE	Q8NFR9	667 aa		13.76	□□□□□ -0.21

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