RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.96■□□□□ 0.796e-9■■□□□ 13.9
PRPF40A-211ENST00000493468 SPG7Q9UQ90 795 aa19.96■□□□□ 0.79
PRPF40A-211ENST00000493468 COL5A3P25940 1745 aaPredicted RBP19.96■□□□□ 0.79
PRPF40A-211ENST00000493468 ITPK1Q13572 414 aa19.95■□□□□ 0.78
PRPF40A-211ENST00000493468 TMOD3Q9NYL9 352 aa19.95■□□□□ 0.78
PRPF40A-211ENST00000493468 PLEKHG2Q9H7P9 1386 aa19.95■□□□□ 0.78
PRPF40A-211ENST00000493468 KDRP35968 1356 aa19.94■□□□□ 0.78
PRPF40A-211ENST00000493468 ATP6V1AP38606 617 aa19.93■□□□□ 0.78
PRPF40A-211ENST00000493468 RBM46Q8TBY0 533 aaKnown RBP19.93■□□□□ 0.78
PRPF40A-211ENST00000493468 NLGN1Q8N2Q7 840 aa19.92■□□□□ 0.78
PRPF40A-211ENST00000493468 ASAP1Q9ULH1 1129 aa19.92■□□□□ 0.78
PRPF40A-211ENST00000493468 BCS1LQ9Y276 419 aa19.92■□□□□ 0.78
PRPF40A-211ENST00000493468 ADRA2BP18089 450 aa19.91■□□□□ 0.78
PRPF40A-211ENST00000493468 TMF1P82094 1093 aa19.91■□□□□ 0.78
PRPF40A-211ENST00000493468 NMRK2Q9NPI5 230 aa19.91■□□□□ 0.78
PRPF40A-211ENST00000493468 EMILIN1Q9Y6C2 1016 aa19.91■□□□□ 0.78
PRPF40A-211ENST00000493468 TNRC6CQ9HCJ0 1690 aaKnown RBP19.9■□□□□ 0.78
PRPF40A-211ENST00000493468 A0A0G2JLW4 131 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 PHKG2P15735 406 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 ARHGAP27Q6ZUM4 889 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 IFNL2Q8IZJ0 200 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 JMYQ8N9B5 988 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 ATG3Q9NT62 314 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 CCDC87Q9NVE4 849 aa19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 RTCBQ9Y3I0 505 aaKnown RBP19.89■□□□□ 0.77
PRPF40A-211ENST00000493468 WASHC2AQ641Q2 1341 aa19.88■□□□□ 0.77
PRPF40A-211ENST00000493468 FSTL1Q12841 308 aa19.88■□□□□ 0.77
PRPF40A-211ENST00000493468 TRAPPC3LQ5T215 181 aa19.88■□□□□ 0.77
PRPF40A-211ENST00000493468 KLRG1Q96E93 195 aa19.88■□□□□ 0.77
PRPF40A-211ENST00000493468 CNTNAP4Q9C0A0 1308 aa19.87■□□□□ 0.77
PRPF40A-211ENST00000493468 DPEP1P16444 411 aa19.87■□□□□ 0.77
PRPF40A-211ENST00000493468 CDCA8Q53HL2 280 aa19.87■□□□□ 0.77
PRPF40A-211ENST00000493468 RC3H1Q5TC82 1133 aaKnown RBP19.87■□□□□ 0.77
PRPF40A-211ENST00000493468 MYH14Q7Z406 1995 aaKnown RBP19.86■□□□□ 0.77
PRPF40A-211ENST00000493468 FCHSD2O94868 740 aa19.86■□□□□ 0.77
PRPF40A-211ENST00000493468 EYA1Q99502 592 aa19.86■□□□□ 0.77
PRPF40A-211ENST00000493468 SBF1O95248 1867 aa19.86■□□□□ 0.77
PRPF40A-211ENST00000493468 GYS1P13807 737 aa19.85■□□□□ 0.77
PRPF40A-211ENST00000493468 C16orf71Q8IYS4 520 aaPredicted RBP19.85■□□□□ 0.77
PRPF40A-211ENST00000493468 C9orf131Q5VYM1 1079 aa19.84■□□□□ 0.77
PRPF40A-211ENST00000493468 ARHGEF1Q92888 912 aaKnown RBP19.84■□□□□ 0.77
PRPF40A-211ENST00000493468 KDM2BQ8NHM5 1336 aa19.83■□□□□ 0.77
PRPF40A-211ENST00000493468 KCPQ6ZWJ8 1503 aa19.83■□□□□ 0.77
PRPF40A-211ENST00000493468 KCNA3P22001 575 aa19.83■□□□□ 0.77
PRPF40A-211ENST00000493468 SLC4A9Q96Q91 983 aa19.83■□□□□ 0.77
PRPF40A-211ENST00000493468 CARD14Q9BXL6 1004 aa19.83■□□□□ 0.77
PRPF40A-211ENST00000493468 PARP3Q9Y6F1 533 aa19.83■□□□□ 0.77
PRPF40A-211ENST00000493468 PCNTO95613 3336 aa19.82■□□□□ 0.76
PRPF40A-211ENST00000493468 ERVV-2B6SEH9 535 aa19.82■□□□□ 0.76
PRPF40A-211ENST00000493468 RPS6KA4O75676 772 aa19.82■□□□□ 0.76
PRPF40A-211ENST00000493468 DCAF5Q96JK2 942 aa19.82■□□□□ 0.76
PRPF40A-211ENST00000493468 PPM1GO15355 546 aaPredicted RBP19.81■□□□□ 0.76
PRPF40A-211ENST00000493468 RFC4P35249 363 aa19.81■□□□□ 0.76
PRPF40A-211ENST00000493468 COL13A1Q5TAT6 717 aaPredicted RBP19.81■□□□□ 0.76
PRPF40A-211ENST00000493468 PIM2Q9P1W9 311 aa19.81■□□□□ 0.76
PRPF40A-211ENST00000493468 HSP90AB1P08238 724 aaKnown RBP19.79■□□□□ 0.76
PRPF40A-211ENST00000493468 ZC3H4Q9UPT8 1303 aaKnown RBP19.78■□□□□ 0.76
PRPF40A-211ENST00000493468 HTRA3P83110 453 aa19.78■□□□□ 0.76
PRPF40A-211ENST00000493468 DALRD3Q5D0E6 543 aaKnown RBP19.78■□□□□ 0.76
PRPF40A-211ENST00000493468 RBM42Q9BTD8 480 aaKnown RBP19.78■□□□□ 0.76
PRPF40A-211ENST00000493468 TJP1Q07157 1748 aa19.78■□□□□ 0.76
PRPF40A-211ENST00000493468 ADAMTS7Q9UKP4 1686 aa19.78■□□□□ 0.76
PRPF40A-211ENST00000493468 RNF181Q9P0P0 153 aa19.77■□□□□ 0.76
PRPF40A-211ENST00000493468 POLKQ9UBT6 870 aa19.77■□□□□ 0.76
PRPF40A-211ENST00000493468 KDM6AO15550 1401 aaPredicted RBP19.76■□□□□ 0.75
PRPF40A-211ENST00000493468 SMC1BQ8NDV3 1235 aa19.76■□□□□ 0.75
PRPF40A-211ENST00000493468 DLEC1Q9Y238 1755 aa19.75■□□□□ 0.75
PRPF40A-211ENST00000493468 EIF4A2Q14240 407 aaKnown RBP19.75■□□□□ 0.75
PRPF40A-211ENST00000493468 USP42Q9H9J4 1324 aaKnown RBP19.75■□□□□ 0.75
PRPF40A-211ENST00000493468 PRELPP51888 382 aa19.73■□□□□ 0.75
PRPF40A-211ENST00000493468 DDR1Q08345 913 aa19.73■□□□□ 0.75
PRPF40A-211ENST00000493468 TNS4Q8IZW8 715 aa19.73■□□□□ 0.75
PRPF40A-211ENST00000493468 RRAGCQ9HB90 399 aa19.73■□□□□ 0.75
PRPF40A-211ENST00000493468 CRKLP46109 303 aaKnown RBP19.72■□□□□ 0.75
PRPF40A-211ENST00000493468 FKBP8Q14318 412 aa19.72■□□□□ 0.75
PRPF40A-211ENST00000493468 TIAM2Q8IVF5 1701 aa19.72■□□□□ 0.75
PRPF40A-211ENST00000493468 NRXN2Q9P2S2 1712 aa19.72■□□□□ 0.75
PRPF40A-211ENST00000493468 AFDNP55196 1824 aaKnown RBP19.72■□□□□ 0.75
PRPF40A-211ENST00000493468 CABP4P57796 275 aa19.71■□□□□ 0.75
PRPF40A-211ENST00000493468 PLEKHO1Q53GL0 409 aaPredicted RBP19.71■□□□□ 0.75
PRPF40A-211ENST00000493468 SCN11AQ9UI33 1791 aa19.7■□□□□ 0.74
PRPF40A-211ENST00000493468 AMOTQ4VCS5 1084 aa19.7■□□□□ 0.74
PRPF40A-211ENST00000493468 SRP68Q9UHB9 627 aaKnown RBP19.7■□□□□ 0.74
PRPF40A-211ENST00000493468 POLRMTO00411 1230 aaKnown RBP19.69■□□□□ 0.74
PRPF40A-211ENST00000493468 CHRNA5P30532 468 aa19.69■□□□□ 0.74
PRPF40A-211ENST00000493468 CCDC88AQ3V6T2 1871 aa19.69■□□□□ 0.74
PRPF40A-211ENST00000493468 TM4SF1P30408 202 aa19.68■□□□□ 0.74
PRPF40A-211ENST00000493468 ZNF530Q6P9A1 599 aaPredicted RBP19.68■□□□□ 0.74
PRPF40A-211ENST00000493468 CAPN15O75808 1086 aa19.67■□□□□ 0.74
PRPF40A-211ENST00000493468 PTCD1O75127 700 aaKnown RBP19.66■□□□□ 0.74
PRPF40A-211ENST00000493468 GLTPD2A6NH11 291 aa19.65■□□□□ 0.74
PRPF40A-211ENST00000493468 VEGFAP15692 232 aaPredicted RBP19.65■□□□□ 0.74
PRPF40A-211ENST00000493468 LMNB1P20700 586 aa19.65■□□□□ 0.74
PRPF40A-211ENST00000493468 MTHFSP49914 203 aa19.65■□□□□ 0.74
PRPF40A-211ENST00000493468 HSPA1AP0DMV8 641 aaKnown RBP19.64■□□□□ 0.73
PRPF40A-211ENST00000493468 HSPA1BP0DMV9 641 aaKnown RBP19.64■□□□□ 0.73
PRPF40A-211ENST00000493468 RASSF7Q02833 373 aa19.64■□□□□ 0.73
PRPF40A-211ENST00000493468 C1orf141Q5JVX7 400 aa19.64■□□□□ 0.73
PRPF40A-211ENST00000493468 INTS5Q6P9B9 1019 aaKnown RBP19.64■□□□□ 0.73
PRPF40A-211ENST00000493468 DICER1Q9UPY3 1922 aaKnown RBP19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms