RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 DDX17Q92841 729 aaKnown RBP15.42■□□□□ 0.06
HMGN1-220ENST00000492280 KIF24Q5T7B8 1368 aa15.42■□□□□ 0.06
HMGN1-220ENST00000492280 TAF7Q15545 349 aaPredicted RBP15.41■□□□□ 0.06
HMGN1-220ENST00000492280 IL1RAPL2Q9NP60 686 aa15.41■□□□□ 0.06
HMGN1-220ENST00000492280 CHD2O14647 1828 aaKnown RBP15.41■□□□□ 0.06
HMGN1-220ENST00000492280 LRRC37A3O60309 1634 aa15.41■□□□□ 0.06
HMGN1-220ENST00000492280 CCDC30Q5VVM6 783 aa15.41■□□□□ 0.06
HMGN1-220ENST00000492280 GNAI2P04899 355 aa15.4■□□□□ 0.06
HMGN1-220ENST00000492280 CCT4P50991 539 aaKnown RBP15.4■□□□□ 0.06
HMGN1-220ENST00000492280 PRAMEF22A3QJZ6 481 aa15.4■□□□□ 0.06
HMGN1-220ENST00000492280 CHPF2Q9P2E5 772 aa15.39■□□□□ 0.05
HMGN1-220ENST00000492280 PXDNQ92626 1479 aa15.39■□□□□ 0.05
HMGN1-220ENST00000492280 ZNF530Q6P9A1 599 aaPredicted RBP15.39■□□□□ 0.05
HMGN1-220ENST00000492280 IP6K1Q92551 441 aa15.39■□□□□ 0.05
HMGN1-220ENST00000492280 TNPO1Q92973 898 aaKnown RBP15.39■□□□□ 0.05
HMGN1-220ENST00000492280 MAP4K4O95819 1239 aaPredicted RBP15.38■□□□□ 0.05
HMGN1-220ENST00000492280 PDE1AP54750 535 aa15.38■□□□□ 0.05
HMGN1-220ENST00000492280 AXIN2Q9Y2T1 843 aa15.38■□□□□ 0.05
HMGN1-220ENST00000492280 NCOA3Q9Y6Q9 1424 aa15.38■□□□□ 0.05
HMGN1-220ENST00000492280 K7ELQ4 463 aaPredicted RBP15.37■□□□□ 0.05
HMGN1-220ENST00000492280 HMMRO75330 724 aa15.37■□□□□ 0.05
HMGN1-220ENST00000492280 ZC3H6P61129 1189 aaKnown RBP15.37■□□□□ 0.05
HMGN1-220ENST00000492280 NFAT5O94916 1531 aa15.37■□□□□ 0.05
HMGN1-220ENST00000492280 SNX21Q969T3 373 aa15.37■□□□□ 0.05
HMGN1-220ENST00000492280 USP44Q9H0E7 712 aa15.37■□□□□ 0.05
HMGN1-220ENST00000492280 SSFA2P28290 1259 aa15.37■□□□□ 0.05
HMGN1-220ENST00000492280 NOL8Q76FK4 1167 aaKnown RBP15.37■□□□□ 0.05
HMGN1-220ENST00000492280 USP26Q9BXU7 913 aa15.37■□□□□ 0.05
HMGN1-220ENST00000492280 NBPF7P0C2Y1 421 aaPredicted RBP15.36■□□□□ 0.05
HMGN1-220ENST00000492280 DDIT3P35638 169 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 NUTM1Q86Y26 1132 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 UNC5CLQ8IV45 518 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 RILPL2Q969X0 211 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 ADGRL3Q9HAR2 1447 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 TRAK2O60296 914 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 GCP02774 474 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 CHAMP1Q96JM3 812 aa15.36■□□□□ 0.05
HMGN1-220ENST00000492280 TRIM6-TRIM34B2RNG4 842 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 TEFQ10587 303 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 PKP1Q13835 747 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 PROSER3Q2NL68 480 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 PI4KAP2A4QPH2 592 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 UBTFL1P0CB47 393 aaPredicted RBP15.35■□□□□ 0.05
HMGN1-220ENST00000492280 EIF4A1P60842 406 aaKnown RBP15.35■□□□□ 0.05
HMGN1-220ENST00000492280 PI4KAP1Q8N8J0 262 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 PANK2Q9BZ23 570 aa15.35■□□□□ 0.05
HMGN1-220ENST00000492280 BTBD11A6QL63 1104 aa15.34■□□□□ 0.05
HMGN1-220ENST00000492280 HTATSF1O43719 755 aaKnown RBP15.34■□□□□ 0.05
HMGN1-220ENST00000492280 LRRCC1Q9C099 1032 aa15.34■□□□□ 0.05
HMGN1-220ENST00000492280 IL25Q9H293 177 aa15.34■□□□□ 0.05
HMGN1-220ENST00000492280 ANKRD24Q8TF21 1146 aa15.33■□□□□ 0.05
HMGN1-220ENST00000492280 MX1P20591 662 aa15.33■□□□□ 0.04
HMGN1-220ENST00000492280 FOXD4L5Q5VV16 416 aaPredicted RBP15.32■□□□□ 0.04
HMGN1-220ENST00000492280 PPP1R42Q7Z4L9 355 aa15.32■□□□□ 0.04
HMGN1-220ENST00000492280 ZGPATQ8N5A5 531 aaKnown RBP15.32■□□□□ 0.04
HMGN1-220ENST00000492280 CABLES1Q8TDN4 633 aa15.32■□□□□ 0.04
HMGN1-220ENST00000492280 FOXD4L4Q8WXT5 416 aaPredicted RBP15.32■□□□□ 0.04
HMGN1-220ENST00000492280 CEMIPQ8WUJ3 1361 aa15.32■□□□□ 0.04
HMGN1-220ENST00000492280 GNAI3P08754 354 aa15.32■□□□□ 0.04
HMGN1-220ENST00000492280 ATP8B2P98198 1209 aa15.32■□□□□ 0.04
HMGN1-220ENST00000492280 RGPD5Q99666 1765 aa15.32■□□□□ 0.04
HMGN1-220ENST00000492280 PROSER2Q86WR7 435 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-220ENST00000492280 PALD1Q9ULE6 856 aa15.31■□□□□ 0.04
HMGN1-220ENST00000492280 NPHP4O75161 1426 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-220ENST00000492280 SURF6O75683 361 aaKnown RBP15.31■□□□□ 0.04
HMGN1-220ENST00000492280 PIP4K2AP48426 406 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-220ENST00000492280 SRGAP3O43295 1099 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 SLC39A6Q13433 755 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 RAB3GAP1Q15042 981 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 SRCIN1Q9C0H9 1055 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 SOS1Q07889 1333 aaPredicted RBP15.3■□□□□ 0.04
HMGN1-220ENST00000492280 IBTKQ9P2D0 1353 aaPredicted RBP15.3■□□□□ 0.04
HMGN1-220ENST00000492280 AIMP1Q12904 312 aaKnown RBP15.3■□□□□ 0.04
HMGN1-220ENST00000492280 ARHGEF25Q86VW2 580 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 SALL3Q9BXA9 1300 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 USP54Q70EL1 1684 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 CWF19L2Q2TBE0 894 aaKnown RBP15.3■□□□□ 0.04
HMGN1-220ENST00000492280 CASC1Q6TDU7 716 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 ANO2Q9NQ90 1003 aa15.3■□□□□ 0.04
HMGN1-220ENST00000492280 ERC2O15083 957 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 DTNBO60941 627 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 KRT28Q7Z3Y7 464 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 KCNH5Q8NCM2 988 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 CACNA1FO60840 1977 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 RABEP1Q15276 862 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 C1orf141Q5JVX7 400 aa15.29■□□□□ 0.04
HMGN1-220ENST00000492280 RNMTO43148 476 aaKnown RBP15.28■□□□□ 0.04
HMGN1-220ENST00000492280 CHRNA2Q15822 529 aa15.28■□□□□ 0.04
HMGN1-220ENST00000492280 DNAAF4Q8WXU2 420 aa15.28■□□□□ 0.04
HMGN1-220ENST00000492280 PA2G4Q9UQ80 394 aaKnown RBP15.28■□□□□ 0.04
HMGN1-220ENST00000492280 XRCC6P12956 609 aaKnown RBP eCLIP15.28■□□□□ 0.04
HMGN1-220ENST00000492280 AKAP4Q5JQC9 854 aa15.28■□□□□ 0.04
HMGN1-220ENST00000492280 ADCY9O60503 1353 aa15.28■□□□□ 0.04
HMGN1-220ENST00000492280 ZNF142P52746 1687 aaPredicted RBP15.27■□□□□ 0.04
HMGN1-220ENST00000492280 PLEKHO1Q53GL0 409 aaPredicted RBP15.27■□□□□ 0.04
HMGN1-220ENST00000492280 BEND3Q5T5X7 828 aa15.27■□□□□ 0.03
HMGN1-220ENST00000492280 UPF3BQ9BZI7 483 aaKnown RBP15.27■□□□□ 0.03
HMGN1-220ENST00000492280 NLRP2Q9NX02 1062 aa15.26■□□□□ 0.03
HMGN1-220ENST00000492280 MAP3K2Q9Y2U5 619 aa15.26■□□□□ 0.03
HMGN1-220ENST00000492280 KDM3BQ7LBC6 1761 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms