RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 LINC00116Q8NCU8 138 aa33.68■■■□□ 2.98
HMGN1-217ENST00000489072 U2SURPO15042 1029 aaKnown RBP33.67■■■□□ 2.98
HMGN1-217ENST00000489072 AMIGO3Q86WK7 504 aa33.66■■■□□ 2.98
HMGN1-217ENST00000489072 MSH5O43196 834 aa33.65■■■□□ 2.98
HMGN1-217ENST00000489072 ATP6V1AP38606 617 aa33.65■■■□□ 2.98
HMGN1-217ENST00000489072 MTHFSDQ2M296 383 aaKnown RBP33.65■■■□□ 2.98
HMGN1-217ENST00000489072 SLC4A9Q96Q91 983 aa33.65■■■□□ 2.98
HMGN1-217ENST00000489072 ARXQ96QS3 562 aa33.65■■■□□ 2.98
HMGN1-217ENST00000489072 ZNF831Q5JPB2 1677 aa33.64■■■□□ 2.98
HMGN1-217ENST00000489072 NFATC2IPQ8NCF5 419 aa33.64■■■□□ 2.98
HMGN1-217ENST00000489072 AK7Q96M32 723 aa33.64■■■□□ 2.98
HMGN1-217ENST00000489072 FHDC1Q9C0D6 1143 aaPredicted RBP33.64■■■□□ 2.98
HMGN1-217ENST00000489072 SMIM5Q71RC9 77 aa33.62■■■□□ 2.97
HMGN1-217ENST00000489072 CFAP53Q96M91 514 aa33.62■■■□□ 2.97
HMGN1-217ENST00000489072 LGR6Q9HBX8 967 aa33.62■■■□□ 2.97
HMGN1-217ENST00000489072 ADAMTS7Q9UKP4 1686 aa33.61■■■□□ 2.97
HMGN1-217ENST00000489072 RBM42Q9BTD8 480 aaKnown RBP33.61■■■□□ 2.97
HMGN1-217ENST00000489072 FLAD1Q8NFF5 587 aa33.6■■■□□ 2.97
HMGN1-217ENST00000489072 SYT17Q9BSW7 474 aa33.6■■■□□ 2.97
HMGN1-217ENST00000489072 COL5A3P25940 1745 aaPredicted RBP33.59■■■□□ 2.97
HMGN1-217ENST00000489072 MRC1P22897 1456 aa33.58■■■□□ 2.97
HMGN1-217ENST00000489072 RNMTO43148 476 aaKnown RBP33.58■■■□□ 2.97
HMGN1-217ENST00000489072 POLD1P28340 1107 aa33.58■■■□□ 2.97
HMGN1-217ENST00000489072 PHF14O94880 888 aa33.57■■■□□ 2.96
HMGN1-217ENST00000489072 MSL1Q68DK7 614 aa33.57■■■□□ 2.96
HMGN1-217ENST00000489072 SLC52A2Q9HAB3 445 aa33.56■■■□□ 2.96
HMGN1-217ENST00000489072 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.55■■■□□ 2.96
HMGN1-217ENST00000489072 MAP3K5Q99683 1374 aa33.55■■■□□ 2.96
HMGN1-217ENST00000489072 GNPATO15228 680 aa33.54■■■□□ 2.96
HMGN1-217ENST00000489072 PTCD1O75127 700 aaKnown RBP33.54■■■□□ 2.96
HMGN1-217ENST00000489072 SSFA2P28290 1259 aa33.53■■■□□ 2.96
HMGN1-217ENST00000489072 RSPH6AQ9H0K4 717 aa33.53■■■□□ 2.96
HMGN1-217ENST00000489072 MYH14Q7Z406 1995 aaKnown RBP33.52■■■□□ 2.96
HMGN1-217ENST00000489072 NUDCQ9Y266 331 aa33.52■■■□□ 2.96
HMGN1-217ENST00000489072 TJP1Q07157 1748 aa33.51■■■□□ 2.96
HMGN1-217ENST00000489072 PRKAR2BP31323 418 aa33.51■■■□□ 2.95
HMGN1-217ENST00000489072 CICQ96RK0 1608 aaPredicted RBP33.5■■■□□ 2.95
HMGN1-217ENST00000489072 PHACTR3Q96KR7 559 aa33.5■■■□□ 2.95
HMGN1-217ENST00000489072 GAS2L2Q8NHY3 880 aa33.49■■■□□ 2.95
HMGN1-217ENST00000489072 U2AF1L5P0DN76 240 aaPredicted RBP33.48■■■□□ 2.95
HMGN1-217ENST00000489072 U2AF1Q01081 240 aaKnown RBP eCLIP33.48■■■□□ 2.954e-7■■■■■ 29.1
HMGN1-217ENST00000489072 RC3H1Q5TC82 1133 aaKnown RBP33.47■■■□□ 2.95
HMGN1-217ENST00000489072 CNTNAP4Q9C0A0 1308 aa33.47■■■□□ 2.95
HMGN1-217ENST00000489072 SLC39A6Q13433 755 aa33.46■■■□□ 2.95
HMGN1-217ENST00000489072 KLHL34Q8N239 644 aa33.46■■■□□ 2.95
HMGN1-217ENST00000489072 GNAT3A8MTJ3 354 aa33.45■■■□□ 2.95
HMGN1-217ENST00000489072 KCPQ6ZWJ8 1503 aa33.44■■■□□ 2.94
HMGN1-217ENST00000489072 DCAF8L1A6NGE4 600 aa33.44■■■□□ 2.94
HMGN1-217ENST00000489072 DDX10Q13206 875 aaKnown RBP33.44■■■□□ 2.94
HMGN1-217ENST00000489072 IL17REQ8NFR9 667 aa33.44■■■□□ 2.94
HMGN1-217ENST00000489072 SIPA1L3O60292 1781 aaPredicted RBP33.43■■■□□ 2.94
HMGN1-217ENST00000489072 RTCBQ9Y3I0 505 aaKnown RBP33.43■■■□□ 2.94
HMGN1-217ENST00000489072 UBR2Q8IWV8 1755 aa33.42■■■□□ 2.94
HMGN1-217ENST00000489072 FCHSD2O94868 740 aa33.41■■■□□ 2.94
HMGN1-217ENST00000489072 RPS6KA4O75676 772 aa33.4■■■□□ 2.94
HMGN1-217ENST00000489072 CRKLP46109 303 aaKnown RBP33.4■■■□□ 2.94
HMGN1-217ENST00000489072 NLGN2Q8NFZ4 835 aa33.4■■■□□ 2.94
HMGN1-217ENST00000489072 UTRNP46939 3433 aa33.4■■■□□ 2.94
HMGN1-217ENST00000489072 TRAPPC3LQ5T215 181 aa33.39■■■□□ 2.94
HMGN1-217ENST00000489072 C4AP0C0L4 1744 aa33.39■■■□□ 2.94
HMGN1-217ENST00000489072 DNAJC10Q8IXB1 793 aa33.38■■■□□ 2.93
HMGN1-217ENST00000489072 ARHGEF1Q92888 912 aaKnown RBP33.37■■■□□ 2.93
HMGN1-217ENST00000489072 CEMIPQ8WUJ3 1361 aa33.36■■■□□ 2.93
HMGN1-217ENST00000489072 ADRA2BP18089 450 aa33.36■■■□□ 2.93
HMGN1-217ENST00000489072 TEFQ10587 303 aa33.35■■■□□ 2.93
HMGN1-217ENST00000489072 INTS5Q6P9B9 1019 aaKnown RBP33.34■■■□□ 2.93
HMGN1-217ENST00000489072 GOLGB1Q14789 3259 aaKnown RBP33.34■■■□□ 2.93
HMGN1-217ENST00000489072 RALBP1Q15311 655 aa33.33■■■□□ 2.93
HMGN1-217ENST00000489072 CYP19A1P11511 503 aaPredicted RBP33.31■■■□□ 2.92
HMGN1-217ENST00000489072 RFC4P35249 363 aa33.29■■■□□ 2.92
HMGN1-217ENST00000489072 TTC5Q8N0Z6 440 aa33.29■■■□□ 2.92
HMGN1-217ENST00000489072 VSIG10Q8N0Z9 540 aa33.29■■■□□ 2.92
HMGN1-217ENST00000489072 CCDC87Q9NVE4 849 aa33.29■■■□□ 2.92
HMGN1-217ENST00000489072 CD2APQ9Y5K6 639 aa33.29■■■□□ 2.92
HMGN1-217ENST00000489072 GYS1P13807 737 aa33.28■■■□□ 2.92
HMGN1-217ENST00000489072 ZNF790Q6PG37 636 aa33.28■■■□□ 2.92
HMGN1-217ENST00000489072 DLG5Q8TDM6 1919 aa33.28■■■□□ 2.92
HMGN1-217ENST00000489072 MMP10P09238 476 aa33.27■■■□□ 2.92
HMGN1-217ENST00000489072 YY1P25490 414 aa33.27■■■□□ 2.92
HMGN1-217ENST00000489072 ZNF496Q96IT1 587 aaPredicted RBP33.27■■■□□ 2.92
HMGN1-217ENST00000489072 MCM10Q7L590 875 aa33.26■■■□□ 2.91
HMGN1-217ENST00000489072 GPR162Q16538 588 aa33.25■■■□□ 2.91
HMGN1-217ENST00000489072 NLGN1Q8N2Q7 840 aa33.25■■■□□ 2.91
HMGN1-217ENST00000489072 PLEKHF1Q96S99 279 aa33.25■■■□□ 2.91
HMGN1-217ENST00000489072 SRP68Q9UHB9 627 aaKnown RBP33.25■■■□□ 2.91
HMGN1-217ENST00000489072 CHD4Q14839 1912 aa33.24■■■□□ 2.91
HMGN1-217ENST00000489072 SOS1Q07889 1333 aaPredicted RBP33.24■■■□□ 2.91
HMGN1-217ENST00000489072 HEG1Q9ULI3 1381 aa33.23■■■□□ 2.91
HMGN1-217ENST00000489072 KCNQ3O43525 872 aa33.23■■■□□ 2.91
HMGN1-217ENST00000489072 DCTN1Q14203 1278 aa33.23■■■□□ 2.91
HMGN1-217ENST00000489072 PELP1Q8IZL8 1130 aaKnown RBP33.23■■■□□ 2.91
HMGN1-217ENST00000489072 RTF1Q92541 710 aaKnown RBP33.23■■■□□ 2.91
HMGN1-217ENST00000489072 ZBTB1Q9Y2K1 713 aa33.23■■■□□ 2.91
HMGN1-217ENST00000489072 USP42Q9H9J4 1324 aaKnown RBP33.23■■■□□ 2.91
HMGN1-217ENST00000489072 BTBD11A6QL63 1104 aa33.21■■■□□ 2.91
HMGN1-217ENST00000489072 HTATSF1O43719 755 aaKnown RBP33.21■■■□□ 2.91
HMGN1-217ENST00000489072 ZEB1P37275 1124 aaPredicted RBP33.21■■■□□ 2.91
HMGN1-217ENST00000489072 MYBBP1AQ9BQG0 1328 aaKnown RBP33.21■■■□□ 2.91
HMGN1-217ENST00000489072 KIF13BQ9NQT8 1826 aa33.2■■■□□ 2.91
HMGN1-217ENST00000489072 YBX3P16989 372 aaKnown RBP eCLIP33.18■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms