RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 LTV1Q96GA3 475 aaPredicted RBP16.92■□□□□ 0.3
TRIM56-204ENST00000487252 PIM2Q9P1W9 311 aa16.92■□□□□ 0.3
TRIM56-204ENST00000487252 MKRN1Q9UHC7 482 aaKnown RBP16.92■□□□□ 0.3
TRIM56-204ENST00000487252 CCDC87Q9NVE4 849 aa16.91■□□□□ 0.3
TRIM56-204ENST00000487252 VIRMAQ69YN4 1812 aaKnown RBP16.91■□□□□ 0.3
TRIM56-204ENST00000487252 POTECB2RU33 542 aa16.9■□□□□ 0.3
TRIM56-204ENST00000487252 WBP1LQ9NX94 342 aa16.9■□□□□ 0.3
TRIM56-204ENST00000487252 LOC102724428A0A0B4J2F2 783 aa16.89■□□□□ 0.29
TRIM56-204ENST00000487252 GNPATO15228 680 aa16.89■□□□□ 0.29
TRIM56-204ENST00000487252 LBX1P52954 281 aa16.89■□□□□ 0.29
TRIM56-204ENST00000487252 SIK1P57059 783 aa16.89■□□□□ 0.29
TRIM56-204ENST00000487252 DALRD3Q5D0E6 543 aaKnown RBP16.89■□□□□ 0.29
TRIM56-204ENST00000487252 HOXC9P31274 260 aa16.88■□□□□ 0.29
TRIM56-204ENST00000487252 TMF1P82094 1093 aa16.88■□□□□ 0.29
TRIM56-204ENST00000487252 ITPK1Q13572 414 aa16.88■□□□□ 0.29
TRIM56-204ENST00000487252 PCDH11XQ9BZA7 1347 aa16.88■□□□□ 0.29
TRIM56-204ENST00000487252 PCDH11YQ9BZA8 1340 aa16.88■□□□□ 0.29
TRIM56-204ENST00000487252 PIGBQ92521 554 aa16.87■□□□□ 0.29
TRIM56-204ENST00000487252 AIDAQ96BJ3 306 aa16.87■□□□□ 0.29
TRIM56-204ENST00000487252 NBPF6Q5VWK0 638 aa16.86■□□□□ 0.29
TRIM56-204ENST00000487252 NBPF4Q96M43 638 aa16.86■□□□□ 0.29
TRIM56-204ENST00000487252 EDC4Q6P2E9 1401 aaKnown RBP16.86■□□□□ 0.29
TRIM56-204ENST00000487252 TIAM2Q8IVF5 1701 aa16.85■□□□□ 0.29
TRIM56-204ENST00000487252 CYP27B1O15528 508 aa16.85■□□□□ 0.29
TRIM56-204ENST00000487252 GYS1P13807 737 aa16.85■□□□□ 0.29
TRIM56-204ENST00000487252 MAP3K19Q56UN5 1328 aa16.85■□□□□ 0.29
TRIM56-204ENST00000487252 RAB3GAP2Q9H2M9 1393 aa16.85■□□□□ 0.29
TRIM56-204ENST00000487252 PDE4DIPQ5VU43 2346 aa16.85■□□□□ 0.29
TRIM56-204ENST00000487252 HSPA8P11142 646 aaKnown RBP16.84■□□□□ 0.29
TRIM56-204ENST00000487252 LMNB1P20700 586 aa16.84■□□□□ 0.29
TRIM56-204ENST00000487252 VEGFBP49765 207 aa16.83■□□□□ 0.28
TRIM56-204ENST00000487252 TRAPPC3LQ5T215 181 aa16.83■□□□□ 0.28
TRIM56-204ENST00000487252 ZNF831Q5JPB2 1677 aa16.82■□□□□ 0.28
TRIM56-204ENST00000487252 ADRA2BP18089 450 aa16.82■□□□□ 0.28
TRIM56-204ENST00000487252 RASSF7Q02833 373 aa16.82■□□□□ 0.28
TRIM56-204ENST00000487252 NKX1-1Q15270 411 aaPredicted RBP16.82■□□□□ 0.28
TRIM56-204ENST00000487252 CHADLQ6NUI6 762 aa16.82■□□□□ 0.28
TRIM56-204ENST00000487252 RAPGEF4Q8WZA2 1011 aa16.82■□□□□ 0.28
TRIM56-204ENST00000487252 PARP3Q9Y6F1 533 aa16.82■□□□□ 0.28
TRIM56-204ENST00000487252 PASKQ96RG2 1323 aa16.81■□□□□ 0.28
TRIM56-204ENST00000487252 CCDC85CA6NKD9 419 aa16.81■□□□□ 0.28
TRIM56-204ENST00000487252 ARHGEF1Q92888 912 aaKnown RBP16.81■□□□□ 0.28
TRIM56-204ENST00000487252 CCDC88AQ3V6T2 1871 aa16.81■□□□□ 0.28
TRIM56-204ENST00000487252 TATP17735 454 aaPredicted RBP16.8■□□□□ 0.28
TRIM56-204ENST00000487252 RTCBQ9Y3I0 505 aaKnown RBP16.8■□□□□ 0.28
TRIM56-204ENST00000487252 RTL1A6NKG5 1358 aa16.79■□□□□ 0.28
TRIM56-204ENST00000487252 CHRNA5P30532 468 aa16.79■□□□□ 0.28
TRIM56-204ENST00000487252 ATP6V1AP38606 617 aa16.79■□□□□ 0.28
TRIM56-204ENST00000487252 USHBP1Q8N6Y0 703 aa16.79■□□□□ 0.28
TRIM56-204ENST00000487252 KDRP35968 1356 aa16.78■□□□□ 0.28
TRIM56-204ENST00000487252 ASAP1Q9ULH1 1129 aa16.78■□□□□ 0.28
TRIM56-204ENST00000487252 COL5A3P25940 1745 aaPredicted RBP16.78■□□□□ 0.28
TRIM56-204ENST00000487252 AMPHP49418 695 aa16.77■□□□□ 0.28
TRIM56-204ENST00000487252 RC3H1Q5TC82 1133 aaKnown RBP16.77■□□□□ 0.28
TRIM56-204ENST00000487252 POTEIP0CG38 1075 aa16.76■□□□□ 0.27
TRIM56-204ENST00000487252 POTEJP0CG39 1038 aa16.76■□□□□ 0.27
TRIM56-204ENST00000487252 FBLN1P23142 703 aa16.76■□□□□ 0.27
TRIM56-204ENST00000487252 A0A1W2PP64 1363 aa16.76■□□□□ 0.27
TRIM56-204ENST00000487252 DLEC1Q9Y238 1755 aa16.75■□□□□ 0.27
TRIM56-204ENST00000487252 DICER1Q9UPY3 1922 aaKnown RBP16.75■□□□□ 0.27
TRIM56-204ENST00000487252 DDR1Q08345 913 aa16.75■□□□□ 0.27
TRIM56-204ENST00000487252 HDGFL2Q7Z4V5 671 aaPredicted RBP16.75■□□□□ 0.27
TRIM56-204ENST00000487252 RFC4P35249 363 aa16.74■□□□□ 0.27
TRIM56-204ENST00000487252 DPY19L2Q6NUT2 758 aa16.74■□□□□ 0.27
TRIM56-204ENST00000487252 SLC4A9Q96Q91 983 aa16.74■□□□□ 0.27
TRIM56-204ENST00000487252 SLC12A5Q9H2X9 1139 aa16.74■□□□□ 0.27
TRIM56-204ENST00000487252 ATG3Q9NT62 314 aa16.74■□□□□ 0.27
TRIM56-204ENST00000487252 MYH14Q7Z406 1995 aaKnown RBP16.74■□□□□ 0.27
TRIM56-204ENST00000487252 CNTNAP4Q9C0A0 1308 aa16.73■□□□□ 0.27
TRIM56-204ENST00000487252 SMG6Q86US8 1419 aaKnown RBP16.73■□□□□ 0.27
TRIM56-204ENST00000487252 TMEM88BA6NKF7 163 aa16.73■□□□□ 0.27
TRIM56-204ENST00000487252 NFKBIEO00221 500 aa16.73■□□□□ 0.27
TRIM56-204ENST00000487252 RPS6KA4O75676 772 aa16.73■□□□□ 0.27
TRIM56-204ENST00000487252 THSD7BQ9C0I4 1608 aa16.73■□□□□ 0.27
TRIM56-204ENST00000487252 RASSF10A6NK89 507 aa16.72■□□□□ 0.27
TRIM56-204ENST00000487252 ITGBL1O95965 494 aaPredicted RBP16.72■□□□□ 0.27
TRIM56-204ENST00000487252 MAP2K1Q02750 393 aaPredicted RBP16.72■□□□□ 0.27
TRIM56-204ENST00000487252 TMOD3Q9NYL9 352 aa16.72■□□□□ 0.27
TRIM56-204ENST00000487252 NCAPD2Q15021 1401 aa16.71■□□□□ 0.27
TRIM56-204ENST00000487252 FKBP8Q14318 412 aa16.7■□□□□ 0.26
TRIM56-204ENST00000487252 COG3Q96JB2 828 aa16.7■□□□□ 0.26
TRIM56-204ENST00000487252 TERF2IPQ9NYB0 399 aa16.7■□□□□ 0.26
TRIM56-204ENST00000487252 INSRP06213 1382 aa16.69■□□□□ 0.26
TRIM56-204ENST00000487252 POLRMTO00411 1230 aaKnown RBP16.69■□□□□ 0.26
TRIM56-204ENST00000487252 TM4SF1P30408 202 aa16.69■□□□□ 0.26
TRIM56-204ENST00000487252 ADAMTS7Q9UKP4 1686 aa16.69■□□□□ 0.26
TRIM56-204ENST00000487252 NRXN2Q9P2S2 1712 aa16.68■□□□□ 0.26
TRIM56-204ENST00000487252 LDHDQ86WU2 507 aa16.68■□□□□ 0.26
TRIM56-204ENST00000487252 TMC1Q8TDI8 760 aa16.68■□□□□ 0.26
TRIM56-204ENST00000487252 WDR33Q9C0J8 1336 aaKnown RBP16.68■□□□□ 0.26
TRIM56-204ENST00000487252 USP42Q9H9J4 1324 aaKnown RBP16.68■□□□□ 0.26
TRIM56-204ENST00000487252 RRS1Q15050 365 aaKnown RBP16.67■□□□□ 0.26
TRIM56-204ENST00000487252 DEFB115Q30KQ5 88 aa16.67■□□□□ 0.26
TRIM56-204ENST00000487252 SCN4AP35499 1836 aa16.67■□□□□ 0.26
TRIM56-204ENST00000487252 ADAMTSL1Q8N6G6 1762 aa16.66■□□□□ 0.26
TRIM56-204ENST00000487252 AFDNP55196 1824 aaKnown RBP16.66■□□□□ 0.26
TRIM56-204ENST00000487252 FER1L6Q2WGJ9 1857 aa16.66■□□□□ 0.26
TRIM56-204ENST00000487252 SRP68Q9UHB9 627 aaKnown RBP16.66■□□□□ 0.26
TRIM56-204ENST00000487252 HSP90AB2PQ58FF8 381 aa16.65■□□□□ 0.26
TRIM56-204ENST00000487252 TTLL6Q8N841 843 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 254.1 ms