RNA–Protein interactions for RNA: ENST00000486515.1

UBR4-214, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-214ENST00000486515 COL14A1Q05707 1796 aaKnown RBP9.09□□□□□ -0.95
UBR4-214ENST00000486515 COL3A1P02461 1466 aaPredicted RBP9.08□□□□□ -0.96
UBR4-214ENST00000486515 SPATA31A1Q5TZJ5 1347 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 PLCH1Q4KWH8 1693 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 GNAT3A8MTJ3 354 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 CENPBP07199 599 aaPredicted RBP9.08□□□□□ -0.96
UBR4-214ENST00000486515 PDE3BQ13370 1112 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 NFE2L2Q16236 605 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 DDB1Q16531 1140 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 STK32BQ9NY57 414 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.08□□□□□ -0.967e-14■■□□□ 11.4
UBR4-214ENST00000486515 WDR90Q96KV7 1748 aa9.08□□□□□ -0.96
UBR4-214ENST00000486515 PCDH11XQ9BZA7 1347 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 PCDH11YQ9BZA8 1340 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 THSD7AQ9UPZ6 1657 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 TMPOP42166 694 aaKnown RBP9.07□□□□□ -0.96
UBR4-214ENST00000486515 AKAP4Q5JQC9 854 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 BARGINQ6ZT62 677 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 IFNL2Q8IZJ0 200 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 NLGN2Q8NFZ4 835 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 DDX54Q8TDD1 881 aaKnown RBP9.07□□□□□ -0.96
UBR4-214ENST00000486515 PLEKHF1Q96S99 279 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 RRP7AQ9Y3A4 280 aaKnown RBP9.07□□□□□ -0.96
UBR4-214ENST00000486515 KDRP35968 1356 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 PLEKHG2Q9H7P9 1386 aa9.07□□□□□ -0.96
UBR4-214ENST00000486515 PLSCR1O15162 318 aa9.06□□□□□ -0.96
UBR4-214ENST00000486515 HTATSF1O43719 755 aaKnown RBP9.06□□□□□ -0.96
UBR4-214ENST00000486515 TEFQ10587 303 aa9.06□□□□□ -0.96
UBR4-214ENST00000486515 MTHFSDQ2M296 383 aaKnown RBP9.06□□□□□ -0.96
UBR4-214ENST00000486515 NCBP3Q53F19 620 aaKnown RBP9.06□□□□□ -0.96
UBR4-214ENST00000486515 COL18A1P39060 1754 aa9.06□□□□□ -0.96
UBR4-214ENST00000486515 GOLGA2Q08379 1002 aa9.05□□□□□ -0.96
UBR4-214ENST00000486515 SLC15A2Q16348 729 aa9.05□□□□□ -0.96
UBR4-214ENST00000486515 PHACTR3Q96KR7 559 aa9.05□□□□□ -0.96
UBR4-214ENST00000486515 MYH16Q9H6N6 1097 aa9.05□□□□□ -0.96
UBR4-214ENST00000486515 ZBED9Q6R2W3 1325 aa9.05□□□□□ -0.96
UBR4-214ENST00000486515 LMO7Q8WWI1 1683 aa9.04□□□□□ -0.96
UBR4-214ENST00000486515 CCDC27Q2M243 656 aa9.04□□□□□ -0.96
UBR4-214ENST00000486515 WDR63Q8IWG1 891 aa9.04□□□□□ -0.96
UBR4-214ENST00000486515 LAS1LQ9Y4W2 734 aaKnown RBP9.04□□□□□ -0.96
UBR4-214ENST00000486515 NRAPQ86VF7 1730 aa9.04□□□□□ -0.96
UBR4-214ENST00000486515 RGS19P49795 217 aa9.03□□□□□ -0.96
UBR4-214ENST00000486515 CABP4P57796 275 aa9.03□□□□□ -0.96
UBR4-214ENST00000486515 GNAI1P63096 354 aa9.03□□□□□ -0.96
UBR4-214ENST00000486515 ABHD8Q96I13 439 aa9.03□□□□□ -0.96
UBR4-214ENST00000486515 DCAF5Q96JK2 942 aa9.03□□□□□ -0.96
UBR4-214ENST00000486515 FAM208AQ9UK61 1670 aaKnown RBP9.02□□□□□ -0.97
UBR4-214ENST00000486515 E9PSI1 815 aa9.02□□□□□ -0.97
UBR4-214ENST00000486515 PHKG2P15735 406 aa9.02□□□□□ -0.97
UBR4-214ENST00000486515 WWC1Q8IX03 1113 aa9.02□□□□□ -0.97
UBR4-214ENST00000486515 PROM2Q8N271 834 aa9.02□□□□□ -0.97
UBR4-214ENST00000486515 SYTL4Q96C24 671 aaPredicted RBP9.02□□□□□ -0.97
UBR4-214ENST00000486515 CHMP4AQ9BY43 222 aa9.02□□□□□ -0.97
UBR4-214ENST00000486515 OVOS2A0A0G2JMS6 1433 aa9.02□□□□□ -0.97
UBR4-214ENST00000486515 WNK3Q9BYP7 1800 aa9.01□□□□□ -0.97
UBR4-214ENST00000486515 POLD1P28340 1107 aa9.01□□□□□ -0.97
UBR4-214ENST00000486515 MPRIPQ6WCQ1 1025 aa9.01□□□□□ -0.97
UBR4-214ENST00000486515 MCM10Q7L590 875 aa9.01□□□□□ -0.97
UBR4-214ENST00000486515 TTC5Q8N0Z6 440 aa9.01□□□□□ -0.97
UBR4-214ENST00000486515 RBM46Q8TBY0 533 aaKnown RBP9.01□□□□□ -0.97
UBR4-214ENST00000486515 NCAPD2Q15021 1401 aa9□□□□□ -0.97
UBR4-214ENST00000486515 RNMTO43148 476 aaKnown RBP9□□□□□ -0.97
UBR4-214ENST00000486515 TAF7Q15545 349 aaPredicted RBP9□□□□□ -0.97
UBR4-214ENST00000486515 PRDM10Q9NQV6 1147 aa9□□□□□ -0.97
UBR4-214ENST00000486515 TMOD3Q9NYL9 352 aa9□□□□□ -0.97
UBR4-214ENST00000486515 IL16Q14005 1332 aa9□□□□□ -0.97
UBR4-214ENST00000486515 MEGF6O75095 1541 aa9□□□□□ -0.97
UBR4-214ENST00000486515 CCDC85CA6NKD9 419 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 BTBD11A6QL63 1104 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 ERVV-2B6SEH9 535 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 FSTL1Q12841 308 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 DCTN1Q14203 1278 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 CFAP44Q96MT7 982 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 IFT57Q9NWB7 429 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 BABAM1Q9NWV8 329 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 TSPYL4Q9UJ04 414 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 TRIM35Q9UPQ4 493 aa8.99□□□□□ -0.97
UBR4-214ENST00000486515 CYP27B1O15528 508 aa8.98□□□□□ -0.97
UBR4-214ENST00000486515 HMGB2P26583 209 aaKnown RBP8.98□□□□□ -0.97
UBR4-214ENST00000486515 SLC52A2Q9HAB3 445 aa8.98□□□□□ -0.97
UBR4-214ENST00000486515 NKX1-1Q15270 411 aaPredicted RBP8.97□□□□□ -0.97
UBR4-214ENST00000486515 TXNRD1Q16881 649 aa8.97□□□□□ -0.97
UBR4-214ENST00000486515 C16orf71Q8IYS4 520 aaPredicted RBP8.97□□□□□ -0.97
UBR4-214ENST00000486515 NFATC2IPQ8NCF5 419 aa8.97□□□□□ -0.97
UBR4-214ENST00000486515 THUMPD2Q9BTF0 503 aaKnown RBP8.97□□□□□ -0.97
UBR4-214ENST00000486515 LGR6Q9HBX8 967 aa8.97□□□□□ -0.97
UBR4-214ENST00000486515 DLG5Q8TDM6 1919 aa8.96□□□□□ -0.97
UBR4-214ENST00000486515 NPM2Q86SE8 214 aaKnown RBP8.96□□□□□ -0.98
UBR4-214ENST00000486515 IL17REQ8NFR9 667 aa8.96□□□□□ -0.98
UBR4-214ENST00000486515 NMRK2Q9NPI5 230 aa8.96□□□□□ -0.98
UBR4-214ENST00000486515 RGPD3A6NKT7 1758 aaPredicted RBP8.96□□□□□ -0.98
UBR4-214ENST00000486515 RGPD4Q7Z3J3 1758 aa8.96□□□□□ -0.98
UBR4-214ENST00000486515 VIRMAQ69YN4 1812 aaKnown RBP8.96□□□□□ -0.98
UBR4-214ENST00000486515 PARP4Q9UKK3 1724 aaKnown RBP8.95□□□□□ -0.98
UBR4-214ENST00000486515 FOXN1O15353 648 aa8.95□□□□□ -0.98
UBR4-214ENST00000486515 SLFN5Q08AF3 891 aa8.95□□□□□ -0.98
UBR4-214ENST00000486515 PTF1AQ7RTS3 328 aa8.95□□□□□ -0.98
UBR4-214ENST00000486515 MARCH10Q8NA82 808 aaPredicted RBP8.95□□□□□ -0.98
UBR4-214ENST00000486515 SMARCC1Q92922 1105 aaPredicted RBP8.95□□□□□ -0.98
UBR4-214ENST00000486515 ACSBG1Q96GR2 724 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms