RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CEP350Q5VT06 3117 aa22.76■■□□□ 1.23
VIM-205ENST00000485947 POLD1P28340 1107 aa22.75■■□□□ 1.23
VIM-205ENST00000485947 SYT17Q9BSW7 474 aa22.75■■□□□ 1.23
VIM-205ENST00000485947 MAP3K5Q99683 1374 aa22.75■■□□□ 1.23
VIM-205ENST00000485947 AKAP4Q5JQC9 854 aa22.74■■□□□ 1.23
VIM-205ENST00000485947 CFAP53Q96M91 514 aa22.74■■□□□ 1.23
VIM-205ENST00000485947 ARXQ96QS3 562 aa22.74■■□□□ 1.23
VIM-205ENST00000485947 ATG3Q9NT62 314 aa22.74■■□□□ 1.23
VIM-205ENST00000485947 ASAP1Q9ULH1 1129 aa22.74■■□□□ 1.23
VIM-205ENST00000485947 CABP4P57796 275 aa22.73■■□□□ 1.23
VIM-205ENST00000485947 C5P01031 1676 aa22.72■■□□□ 1.23
VIM-205ENST00000485947 AK7Q96M32 723 aa22.72■■□□□ 1.23
VIM-205ENST00000485947 FHDC1Q9C0D6 1143 aaPredicted RBP22.72■■□□□ 1.23
VIM-205ENST00000485947 KDM6AO15550 1401 aaPredicted RBP22.72■■□□□ 1.23
VIM-205ENST00000485947 CNGB1Q14028 1251 aaPredicted RBP22.71■■□□□ 1.23
VIM-205ENST00000485947 COL23A1Q86Y22 540 aaPredicted RBP22.71■■□□□ 1.23
VIM-205ENST00000485947 ATP6V1AP38606 617 aa22.7■■□□□ 1.22
VIM-205ENST00000485947 COL24A1Q17RW2 1714 aa22.69■■□□□ 1.22
VIM-205ENST00000485947 COL3A1P02461 1466 aaPredicted RBP22.69■■□□□ 1.22
VIM-205ENST00000485947 SSFA2P28290 1259 aa22.69■■□□□ 1.22
VIM-205ENST00000485947 TAF1LQ8IZX4 1826 aa22.68■■□□□ 1.22
VIM-205ENST00000485947 ZNF831Q5JPB2 1677 aa22.68■■□□□ 1.22
VIM-205ENST00000485947 HMOX1P09601 288 aa22.68■■□□□ 1.22
VIM-205ENST00000485947 NUDCQ9Y266 331 aa22.68■■□□□ 1.22
VIM-205ENST00000485947 C4BP0C0L5 1744 aa22.68■■□□□ 1.22
VIM-205ENST00000485947 MSH5O43196 834 aa22.66■■□□□ 1.22
VIM-205ENST00000485947 RC3H1Q5TC82 1133 aaKnown RBP22.66■■□□□ 1.22
VIM-205ENST00000485947 NFATC2IPQ8NCF5 419 aa22.66■■□□□ 1.22
VIM-205ENST00000485947 LINC00116Q8NCU8 138 aa22.66■■□□□ 1.22
VIM-205ENST00000485947 U2SURPO15042 1029 aaKnown RBP22.65■■□□□ 1.22
VIM-205ENST00000485947 PPP2R1AP30153 589 aa22.65■■□□□ 1.22
VIM-205ENST00000485947 ITPK1Q13572 414 aa22.65■■□□□ 1.22
VIM-205ENST00000485947 TUBGCP6Q96RT7 1819 aa22.65■■□□□ 1.22
VIM-205ENST00000485947 MTHFSDQ2M296 383 aaKnown RBP22.64■■□□□ 1.21
VIM-205ENST00000485947 GAS2L2Q8NHY3 880 aa22.64■■□□□ 1.21
VIM-205ENST00000485947 SLC52A2Q9HAB3 445 aa22.64■■□□□ 1.21
VIM-205ENST00000485947 MRS2Q9HD23 443 aa22.64■■□□□ 1.21
VIM-205ENST00000485947 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.63■■□□□ 1.21
VIM-205ENST00000485947 ADRA2BP18089 450 aa22.63■■□□□ 1.21
VIM-205ENST00000485947 CNTNAP4Q9C0A0 1308 aa22.62■■□□□ 1.21
VIM-205ENST00000485947 RNMTO43148 476 aaKnown RBP22.62■■□□□ 1.21
VIM-205ENST00000485947 RBM42Q9BTD8 480 aaKnown RBP22.62■■□□□ 1.21
VIM-205ENST00000485947 GOLGB1Q14789 3259 aaKnown RBP22.62■■□□□ 1.21
VIM-205ENST00000485947 MRC1P22897 1456 aa22.6■■□□□ 1.21
VIM-205ENST00000485947 GNPATO15228 680 aa22.6■■□□□ 1.21
VIM-205ENST00000485947 SLC4A9Q96Q91 983 aa22.6■■□□□ 1.21
VIM-205ENST00000485947 RTCBQ9Y3I0 505 aaKnown RBP22.6■■□□□ 1.21
VIM-205ENST00000485947 SCN11AQ9UI33 1791 aa22.6■■□□□ 1.21
VIM-205ENST00000485947 FCHSD2O94868 740 aa22.59■■□□□ 1.21
VIM-205ENST00000485947 UBR3Q6ZT12 1888 aa22.58■■□□□ 1.21
VIM-205ENST00000485947 GIGYF1O75420 1035 aaPredicted RBP22.58■■□□□ 1.21
VIM-205ENST00000485947 CCDC184Q52MB2 194 aa22.58■■□□□ 1.21
VIM-205ENST00000485947 LGR6Q9HBX8 967 aa22.58■■□□□ 1.21
VIM-205ENST00000485947 GNAT3A8MTJ3 354 aa22.57■■□□□ 1.2
VIM-205ENST00000485947 RPS6KA4O75676 772 aa22.57■■□□□ 1.2
VIM-205ENST00000485947 TRAPPC3LQ5T215 181 aa22.57■■□□□ 1.2
VIM-205ENST00000485947 CD2APQ9Y5K6 639 aa22.57■■□□□ 1.2
VIM-205ENST00000485947 ADAMTS7Q9UKP4 1686 aa22.57■■□□□ 1.2
VIM-205ENST00000485947 PTCD1O75127 700 aaKnown RBP22.56■■□□□ 1.2
VIM-205ENST00000485947 PHF14O94880 888 aa22.56■■□□□ 1.2
VIM-205ENST00000485947 VSIG10Q8N0Z9 540 aa22.56■■□□□ 1.2
VIM-205ENST00000485947 RSPH6AQ9H0K4 717 aa22.56■■□□□ 1.2
VIM-205ENST00000485947 AMIGO3Q86WK7 504 aa22.55■■□□□ 1.2
VIM-205ENST00000485947 CICQ96RK0 1608 aaPredicted RBP22.55■■□□□ 1.2
VIM-205ENST00000485947 U2AF1L5P0DN76 240 aaPredicted RBP22.54■■□□□ 1.2
VIM-205ENST00000485947 PRKAR2BP31323 418 aa22.54■■□□□ 1.2
VIM-205ENST00000485947 U2AF1Q01081 240 aaKnown RBP eCLIP22.54■■□□□ 1.2
VIM-205ENST00000485947 NLGN1Q8N2Q7 840 aa22.54■■□□□ 1.2
VIM-205ENST00000485947 MSL1Q68DK7 614 aa22.53■■□□□ 1.2
VIM-205ENST00000485947 TEFQ10587 303 aa22.52■■□□□ 1.2
VIM-205ENST00000485947 COL5A3P25940 1745 aaPredicted RBP22.51■■□□□ 1.19
VIM-205ENST00000485947 HTATSF1O43719 755 aaKnown RBP22.5■■□□□ 1.19
VIM-205ENST00000485947 RFC4P35249 363 aa22.5■■□□□ 1.19
VIM-205ENST00000485947 CRKLP46109 303 aaKnown RBP22.5■■□□□ 1.19
VIM-205ENST00000485947 GPR162Q16538 588 aa22.5■■□□□ 1.19
VIM-205ENST00000485947 KLHL34Q8N239 644 aa22.5■■□□□ 1.19
VIM-205ENST00000485947 IL17REQ8NFR9 667 aa22.5■■□□□ 1.19
VIM-205ENST00000485947 ARHGEF1Q92888 912 aaKnown RBP22.5■■□□□ 1.19
VIM-205ENST00000485947 PHACTR3Q96KR7 559 aa22.5■■□□□ 1.19
VIM-205ENST00000485947 CEMIPQ8WUJ3 1361 aa22.5■■□□□ 1.19
VIM-205ENST00000485947 TTC5Q8N0Z6 440 aa22.49■■□□□ 1.19
VIM-205ENST00000485947 PNISRQ8TF01 805 aaKnown RBP22.49■■□□□ 1.19
VIM-205ENST00000485947 PNNQ9H307 717 aaKnown RBP22.49■■□□□ 1.19
VIM-205ENST00000485947 NEFMP07197 916 aa22.48■■□□□ 1.19
VIM-205ENST00000485947 TEX13AQ9BXU3 409 aaPredicted RBP22.48■■□□□ 1.19
VIM-205ENST00000485947 SLC39A6Q13433 755 aa22.46■■□□□ 1.19
VIM-205ENST00000485947 INTS5Q6P9B9 1019 aaKnown RBP22.46■■□□□ 1.19
VIM-205ENST00000485947 ZNF790Q6PG37 636 aa22.46■■□□□ 1.19
VIM-205ENST00000485947 RTF1Q92541 710 aaKnown RBP22.46■■□□□ 1.19
VIM-205ENST00000485947 CCDC87Q9NVE4 849 aa22.46■■□□□ 1.19
VIM-205ENST00000485947 GRIN3BO60391 1043 aa22.45■■□□□ 1.18
VIM-205ENST00000485947 CYP19A1P11511 503 aaPredicted RBP22.45■■□□□ 1.18
VIM-205ENST00000485947 SMIM5Q71RC9 77 aa22.45■■□□□ 1.18
VIM-205ENST00000485947 DNAJC10Q8IXB1 793 aa22.45■■□□□ 1.18
VIM-205ENST00000485947 FAM9BQ8IZU0 186 aa22.45■■□□□ 1.18
VIM-205ENST00000485947 KCPQ6ZWJ8 1503 aa22.45■■□□□ 1.18
VIM-205ENST00000485947 STARD3NLO95772 234 aa22.44■■□□□ 1.18
VIM-205ENST00000485947 GYS1P13807 737 aa22.44■■□□□ 1.18
VIM-205ENST00000485947 NLGN2Q8NFZ4 835 aa22.44■■□□□ 1.18
VIM-205ENST00000485947 TJP1Q07157 1748 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms