RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ITPRIPQ8IWB1 547 aa17.87■□□□□ 0.45
CLK3-204ENST00000483723 IFNL2Q8IZJ0 200 aa17.87■□□□□ 0.45
CLK3-204ENST00000483723 HOXB7P09629 217 aa17.86■□□□□ 0.45
CLK3-204ENST00000483723 PARP4Q9UKK3 1724 aaKnown RBP17.86■□□□□ 0.45
CLK3-204ENST00000483723 RGS12O14924 1447 aa17.86■□□□□ 0.45
CLK3-204ENST00000483723 COL16A1Q07092 1604 aaPredicted RBP17.86■□□□□ 0.45
CLK3-204ENST00000483723 COL14A1Q05707 1796 aaKnown RBP17.86■□□□□ 0.45
CLK3-204ENST00000483723 SLC4A2P04920 1241 aa17.86■□□□□ 0.45
CLK3-204ENST00000483723 CCDC30Q5VVM6 783 aa17.86■□□□□ 0.45
CLK3-204ENST00000483723 TOM1L2Q6ZVM7 507 aa17.86■□□□□ 0.45
CLK3-204ENST00000483723 CHMP4BQ9H444 224 aaKnown RBP17.86■□□□□ 0.45
CLK3-204ENST00000483723 HEG1Q9ULI3 1381 aa17.85■□□□□ 0.45
CLK3-204ENST00000483723 PHLPP1O60346 1717 aa17.85■□□□□ 0.45
CLK3-204ENST00000483723 BTBD11A6QL63 1104 aa17.85■□□□□ 0.45
CLK3-204ENST00000483723 ZBTB7BO15156 539 aaPredicted RBP17.85■□□□□ 0.45
CLK3-204ENST00000483723 KDM6AO15550 1401 aaPredicted RBP17.85■□□□□ 0.45
CLK3-204ENST00000483723 CYP27B1O15528 508 aa17.84■□□□□ 0.45
CLK3-204ENST00000483723 INTS3Q68E01 1043 aaKnown RBP17.84■□□□□ 0.45
CLK3-204ENST00000483723 KCNQ3O43525 872 aa17.84■□□□□ 0.45
CLK3-204ENST00000483723 HSP90AB1P08238 724 aaKnown RBP17.84■□□□□ 0.45
CLK3-204ENST00000483723 EVA1CP58658 441 aa17.83■□□□□ 0.44
CLK3-204ENST00000483723 LARP1Q6PKG0 1096 aaKnown RBP17.83■□□□□ 0.44
CLK3-204ENST00000483723 DCAF5Q96JK2 942 aa17.83■□□□□ 0.44
CLK3-204ENST00000483723 CHMP4AQ9BY43 222 aa17.83■□□□□ 0.44
CLK3-204ENST00000483723 MRC1P22897 1456 aa17.83■□□□□ 0.44
CLK3-204ENST00000483723 STK31Q9BXU1 1019 aa17.82■□□□□ 0.44
CLK3-204ENST00000483723 RWDD1Q9H446 243 aaPredicted RBP17.82■□□□□ 0.44
CLK3-204ENST00000483723 PIP4K2BP78356 416 aa17.81■□□□□ 0.44
CLK3-204ENST00000483723 HDAC1Q13547 482 aaPredicted RBP17.81■□□□□ 0.44
CLK3-204ENST00000483723 G2E3Q7L622 706 aa17.81■□□□□ 0.44
CLK3-204ENST00000483723 SLC52A2Q9HAB3 445 aa17.81■□□□□ 0.44
CLK3-204ENST00000483723 IL2RBP14784 551 aa17.81■□□□□ 0.44
CLK3-204ENST00000483723 ZCRB1Q8TBF4 217 aaKnown RBP17.81■□□□□ 0.44
CLK3-204ENST00000483723 NKX1-1Q15270 411 aaPredicted RBP17.8■□□□□ 0.44
CLK3-204ENST00000483723 STRN4Q9NRL3 753 aa17.8■□□□□ 0.44
CLK3-204ENST00000483723 BTG4Q9NY30 223 aa17.8■□□□□ 0.44
CLK3-204ENST00000483723 SHANK3Q9BYB0 1731 aa17.79■□□□□ 0.44
CLK3-204ENST00000483723 HDGFL1Q5TGJ6 251 aa17.78■□□□□ 0.44
CLK3-204ENST00000483723 PCDH11XQ9BZA7 1347 aa17.78■□□□□ 0.44
CLK3-204ENST00000483723 PCDH11YQ9BZA8 1340 aa17.78■□□□□ 0.44
CLK3-204ENST00000483723 GIGYF1O75420 1035 aaPredicted RBP17.78■□□□□ 0.44
CLK3-204ENST00000483723 FLIIQ13045 1269 aa17.77■□□□□ 0.44
CLK3-204ENST00000483723 NFATC2IPQ8NCF5 419 aa17.77■□□□□ 0.44
CLK3-204ENST00000483723 ZNF790Q6PG37 636 aa17.76■□□□□ 0.43
CLK3-204ENST00000483723 RBM19Q9Y4C8 960 aaKnown RBP17.76■□□□□ 0.43
CLK3-204ENST00000483723 CCT4P50991 539 aaKnown RBP17.75■□□□□ 0.43
CLK3-204ENST00000483723 SKAP1Q86WV1 359 aa17.75■□□□□ 0.43
CLK3-204ENST00000483723 NECTIN2Q92692 538 aa17.75■□□□□ 0.43
CLK3-204ENST00000483723 N4BP2Q86UW6 1770 aaPredicted RBP17.74■□□□□ 0.43
CLK3-204ENST00000483723 DISP2A7MBM2 1401 aa17.74■□□□□ 0.43
CLK3-204ENST00000483723 ERVV-2B6SEH9 535 aa17.74■□□□□ 0.43
CLK3-204ENST00000483723 HSPA1LP34931 641 aa17.74■□□□□ 0.43
CLK3-204ENST00000483723 SMC5Q8IY18 1101 aa17.74■□□□□ 0.43
CLK3-204ENST00000483723 PLCH1Q4KWH8 1693 aa17.73■□□□□ 0.43
CLK3-204ENST00000483723 EIF2S2P20042 333 aaKnown RBP17.72■□□□□ 0.43
CLK3-204ENST00000483723 PXDNLA1KZ92 1463 aa17.72■□□□□ 0.43
CLK3-204ENST00000483723 NRAPQ86VF7 1730 aa17.72■□□□□ 0.43
CLK3-204ENST00000483723 F6X3S4 739 aa17.72■□□□□ 0.43
CLK3-204ENST00000483723 CABP4P57796 275 aa17.72■□□□□ 0.43
CLK3-204ENST00000483723 SLC39A6Q13433 755 aa17.72■□□□□ 0.43
CLK3-204ENST00000483723 DBF4Q9UBU7 674 aaPredicted RBP17.72■□□□□ 0.43
CLK3-204ENST00000483723 FKBP5Q13451 457 aaPredicted RBP17.71■□□□□ 0.43
CLK3-204ENST00000483723 PHAXQ9H814 394 aaKnown RBP17.71■□□□□ 0.43
CLK3-204ENST00000483723 CHPF2Q9P2E5 772 aa17.71■□□□□ 0.43
CLK3-204ENST00000483723 PDZRN3Q9UPQ7 1066 aa17.71■□□□□ 0.43
CLK3-204ENST00000483723 SIRT2Q8IXJ6 389 aa17.7■□□□□ 0.42
CLK3-204ENST00000483723 C5P01031 1676 aa17.69■□□□□ 0.42
CLK3-204ENST00000483723 WNK3Q9BYP7 1800 aa17.69■□□□□ 0.42
CLK3-204ENST00000483723 NWD2Q9ULI1 1742 aa17.69■□□□□ 0.42
CLK3-204ENST00000483723 PRAMEF22A3QJZ6 481 aa17.69■□□□□ 0.42
CLK3-204ENST00000483723 ZNF496Q96IT1 587 aaPredicted RBP17.69■□□□□ 0.42
CLK3-204ENST00000483723 DDX54Q8TDD1 881 aaKnown RBP17.68■□□□□ 0.42
CLK3-204ENST00000483723 C1orf115Q9H7X2 142 aa17.68■□□□□ 0.42
CLK3-204ENST00000483723 DDX21Q9NR30 783 aaKnown RBP eCLIP17.68■□□□□ 0.42
CLK3-204ENST00000483723 PAPPAQ13219 1627 aa17.68■□□□□ 0.42
CLK3-204ENST00000483723 GLI3P10071 1580 aa17.68■□□□□ 0.42
CLK3-204ENST00000483723 UBR2Q8IWV8 1755 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 SLIT2O94813 1529 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 ADAMTS2O95450 1211 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 PDE4AP27815 886 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 PDIA6Q15084 440 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 SLC4A10Q6U841 1118 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 RPAP2Q8IXW5 612 aaPredicted RBP17.67■□□□□ 0.42
CLK3-204ENST00000483723 FMNL2Q96PY5 1086 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 MEIS3Q99687 375 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 BACH2Q9BYV9 841 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 USP35Q9P2H5 1018 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 TOGARAM1Q9Y4F4 1720 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 SNRPA1P09661 255 aaKnown RBP17.67■□□□□ 0.42
CLK3-204ENST00000483723 TTC5Q8N0Z6 440 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 ANKRD44Q8N8A2 993 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 GCC1Q96CN9 775 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 HYPKQ9NX55 129 aa17.67■□□□□ 0.42
CLK3-204ENST00000483723 THRAP3Q9Y2W1 955 aaKnown RBP17.67■□□□□ 0.42
CLK3-204ENST00000483723 ATP10DQ9P241 1426 aa17.66■□□□□ 0.42
CLK3-204ENST00000483723 RGS3P49796 1198 aa17.66■□□□□ 0.42
CLK3-204ENST00000483723 CDCA7Q9BWT1 371 aaPredicted RBP17.66■□□□□ 0.42
CLK3-204ENST00000483723 SPATA31A1Q5TZJ5 1347 aa17.65■□□□□ 0.42
CLK3-204ENST00000483723 JCADQ9P266 1359 aa17.65■□□□□ 0.42
CLK3-204ENST00000483723 PROSER3Q2NL68 480 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms