RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 BCL11BQ9C0K0 894 aaPredicted RBP16.19■□□□□ 0.18
USP40-214ENST00000483519 ATP7BP35670 1465 aa16.19■□□□□ 0.18
USP40-214ENST00000483519 TSPY26PQ9H489 355 aa16.19■□□□□ 0.18
USP40-214ENST00000483519 PHF14O94880 888 aa16.18■□□□□ 0.18
USP40-214ENST00000483519 OTUD7AQ8TE49 926 aaPredicted RBP16.18■□□□□ 0.18
USP40-214ENST00000483519 SLC26A8Q96RN1 970 aa16.18■□□□□ 0.18
USP40-214ENST00000483519 PRDM4Q9UKN5 801 aa16.18■□□□□ 0.18
USP40-214ENST00000483519 CEP85Q6P2H3 762 aa16.18■□□□□ 0.18
USP40-214ENST00000483519 ADAMTS13Q76LX8 1427 aa16.17■□□□□ 0.18
USP40-214ENST00000483519 RNF214Q8ND24 703 aa16.17■□□□□ 0.18
USP40-214ENST00000483519 NSFL1CQ9UNZ2 370 aaKnown RBP16.17■□□□□ 0.18
USP40-214ENST00000483519 CPSF1Q10570 1443 aaKnown RBP16.17■□□□□ 0.18
USP40-214ENST00000483519 CABP1Q9NZU7 370 aa16.17■□□□□ 0.18
USP40-214ENST00000483519 MAP2P11137 1827 aaKnown RBP16.16■□□□□ 0.18
USP40-214ENST00000483519 BRD1O95696 1058 aa16.16■□□□□ 0.18
USP40-214ENST00000483519 TMX3Q96JJ7 454 aa16.16■□□□□ 0.18
USP40-214ENST00000483519 DLG5Q8TDM6 1919 aa16.16■□□□□ 0.18
USP40-214ENST00000483519 CDK12Q9NYV4 1490 aaPredicted RBP16.16■□□□□ 0.18
USP40-214ENST00000483519 CDK19Q9BWU1 502 aa16.16■□□□□ 0.18
USP40-214ENST00000483519 NEK4P51957 841 aa16.15■□□□□ 0.18
USP40-214ENST00000483519 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.15■□□□□ 0.182e-6■□□□□ 9
USP40-214ENST00000483519 RTL1A6NKG5 1358 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 MCCP23508 829 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 IL13P35225 146 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 TAF7LQ5H9L4 462 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 FOXD4L5Q5VV16 416 aaPredicted RBP16.14■□□□□ 0.17
USP40-214ENST00000483519 FAM184AQ8NB25 1140 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 FOXD4L4Q8WXT5 416 aaPredicted RBP16.14■□□□□ 0.17
USP40-214ENST00000483519 SMARCA5O60264 1052 aaPredicted RBP16.14■□□□□ 0.17
USP40-214ENST00000483519 HMMRO75330 724 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 CUL4AQ13619 759 aa16.14■□□□□ 0.17
USP40-214ENST00000483519 INTS4Q96HW7 963 aaKnown RBP16.14■□□□□ 0.17
USP40-214ENST00000483519 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP40-214ENST00000483519 KCNA6P17658 529 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 DNTTIP2Q5QJE6 756 aaKnown RBP16.13■□□□□ 0.17
USP40-214ENST00000483519 MYRIPQ8NFW9 859 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 CHAMP1Q96JM3 812 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 PRIMPOLQ96LW4 560 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 SENP3Q9H4L4 574 aaPredicted RBP16.13■□□□□ 0.17
USP40-214ENST00000483519 OSBPL3Q9H4L5 887 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 MSH6P52701 1360 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 RGS12O14924 1447 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 APBB1O00213 710 aa16.13■□□□□ 0.17
USP40-214ENST00000483519 CCDC94Q9BW85 323 aaPredicted RBP16.13■□□□□ 0.17
USP40-214ENST00000483519 HMGN5P82970 282 aaKnown RBP16.12■□□□□ 0.17
USP40-214ENST00000483519 UVSSAQ2YD98 709 aa16.12■□□□□ 0.17
USP40-214ENST00000483519 PTPRCP08575 1304 aa16.12■□□□□ 0.17
USP40-214ENST00000483519 FBLN1P23142 703 aa16.11■□□□□ 0.17
USP40-214ENST00000483519 BRD2P25440 801 aaKnown RBP16.11■□□□□ 0.17
USP40-214ENST00000483519 ANAPC15P60006 121 aa16.11■□□□□ 0.17
USP40-214ENST00000483519 EMILIN1Q9Y6C2 1016 aa16.11■□□□□ 0.17
USP40-214ENST00000483519 PDE1AP54750 535 aa16.1■□□□□ 0.17
USP40-214ENST00000483519 PIBF1Q8WXW3 757 aa16.1■□□□□ 0.17
USP40-214ENST00000483519 METP08581 1390 aa16.09■□□□□ 0.17
USP40-214ENST00000483519 AATKQ6ZMQ8 1374 aa16.09■□□□□ 0.17
USP40-214ENST00000483519 FAM83GA6ND36 823 aa16.09■□□□□ 0.17
USP40-214ENST00000483519 MEIS3Q99687 375 aa16.09■□□□□ 0.17
USP40-214ENST00000483519 ARID3AQ99856 593 aa16.09■□□□□ 0.17
USP40-214ENST00000483519 MON2Q7Z3U7 1717 aa16.09■□□□□ 0.17
USP40-214ENST00000483519 CHD2O14647 1828 aaKnown RBP16.09■□□□□ 0.17
USP40-214ENST00000483519 ZNF335Q9H4Z2 1342 aaPredicted RBP16.08■□□□□ 0.17
USP40-214ENST00000483519 ESYT1Q9BSJ8 1104 aa16.08■□□□□ 0.16
USP40-214ENST00000483519 AMOTL2Q9Y2J4 779 aa16.08■□□□□ 0.16
USP40-214ENST00000483519 TOPAZ1Q8N9V7 1692 aa16.08■□□□□ 0.16
USP40-214ENST00000483519 EDC4Q6P2E9 1401 aaKnown RBP16.08■□□□□ 0.16
USP40-214ENST00000483519 SSH2Q76I76 1423 aa16.08■□□□□ 0.16
USP40-214ENST00000483519 AKAP12Q02952 1782 aa16.08■□□□□ 0.16
USP40-214ENST00000483519 WDR33Q9C0J8 1336 aaKnown RBP16.08■□□□□ 0.16
USP40-214ENST00000483519 NWD1Q149M9 1564 aa16.07■□□□□ 0.16
USP40-214ENST00000483519 KIAA0232Q92628 1395 aa16.07■□□□□ 0.16
USP40-214ENST00000483519 GTF2F1P35269 517 aaKnown RBP eCLIP16.07■□□□□ 0.16
USP40-214ENST00000483519 DCTN1Q14203 1278 aa16.07■□□□□ 0.16
USP40-214ENST00000483519 LETM1O95202 739 aaPredicted RBP16.06■□□□□ 0.16
USP40-214ENST00000483519 NOLC1Q14978 699 aaKnown RBP eCLIP16.06■□□□□ 0.16
USP40-214ENST00000483519 CNKSR2Q8WXI2 1034 aa16.06■□□□□ 0.16
USP40-214ENST00000483519 UTP14CQ5TAP6 766 aaKnown RBP16.06■□□□□ 0.16
USP40-214ENST00000483519 CCDC183Q5T5S1 534 aa16.05■□□□□ 0.16
USP40-214ENST00000483519 USP48Q86UV5 1035 aa16.05■□□□□ 0.16
USP40-214ENST00000483519 PROSER2Q86WR7 435 aaPredicted RBP16.04■□□□□ 0.16
USP40-214ENST00000483519 TMEM87AQ8NBN3 555 aa16.04■□□□□ 0.16
USP40-214ENST00000483519 IL17RAQ96F46 866 aa16.04■□□□□ 0.16
USP40-214ENST00000483519 USP25Q9UHP3 1055 aa16.04■□□□□ 0.16
USP40-214ENST00000483519 PTPRUQ92729 1446 aa16.04■□□□□ 0.16
USP40-214ENST00000483519 ANO2Q9NQ90 1003 aa16.04■□□□□ 0.16
USP40-214ENST00000483519 TUBGCP6Q96RT7 1819 aa16.04■□□□□ 0.16
USP40-214ENST00000483519 CHL1O00533 1208 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 GADD45BO75293 160 aaPredicted RBP16.03■□□□□ 0.16
USP40-214ENST00000483519 CDK11BP21127 795 aaKnown RBP16.03■□□□□ 0.16
USP40-214ENST00000483519 DMTNQ08495 405 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 NOL8Q76FK4 1167 aaKnown RBP16.03■□□□□ 0.16
USP40-214ENST00000483519 PALD1Q9ULE6 856 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 XRN1Q8IZH2 1706 aaKnown RBP16.03■□□□□ 0.16
USP40-214ENST00000483519 ADCY5O95622 1261 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 KRT24Q2M2I5 525 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 SPTLC3Q9NUV7 552 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 CCT4P50991 539 aaKnown RBP16.03■□□□□ 0.16
USP40-214ENST00000483519 FKBP5Q13451 457 aaPredicted RBP16.03■□□□□ 0.16
USP40-214ENST00000483519 COG3Q96JB2 828 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 GDPD2Q9HCC8 539 aa16.03■□□□□ 0.16
USP40-214ENST00000483519 KIF3AQ9Y496 699 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms