RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, human

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-215	ENST00000478473	LINC00116	Q8NCU8	138 aa		31.57	■■■□□ 2.64
C9orf3-215	ENST00000478473	ADAMTS7	Q9UKP4	1686 aa		31.57	■■■□□ 2.64
C9orf3-215	ENST00000478473	PPP2R1A	P30153	589 aa		31.56	■■■□□ 2.64
C9orf3-215	ENST00000478473	SYT17	Q9BSW7	474 aa		31.56	■■■□□ 2.64
C9orf3-215	ENST00000478473	FHDC1	Q9C0D6	1143 aa	Predicted RBP	31.56	■■■□□ 2.64
C9orf3-215	ENST00000478473	UBR3	Q6ZT12	1888 aa		31.55	■■■□□ 2.64
C9orf3-215	ENST00000478473	ATP6V1A	P38606	617 aa		31.55	■■■□□ 2.64
C9orf3-215	ENST00000478473	SLC4A9	Q96Q91	983 aa		31.55	■■■□□ 2.64
C9orf3-215	ENST00000478473	MRC1	P22897	1456 aa		31.54	■■■□□ 2.64
C9orf3-215	ENST00000478473	MTHFSD	Q2M296	383 aa	Known RBP	31.54	■■■□□ 2.64
C9orf3-215	ENST00000478473	AK7	Q96M32	723 aa		31.54	■■■□□ 2.64
C9orf3-215	ENST00000478473	CNGB1	Q14028	1251 aa	Predicted RBP	31.53	■■■□□ 2.64
C9orf3-215	ENST00000478473	AMIGO3	Q86WK7	504 aa		31.53	■■■□□ 2.64
C9orf3-215	ENST00000478473	NFATC2IP	Q8NCF5	419 aa		31.53	■■■□□ 2.64
C9orf3-215	ENST00000478473	CFAP53	Q96M91	514 aa		31.53	■■■□□ 2.64
C9orf3-215	ENST00000478473	SSFA2	P28290	1259 aa		31.52	■■■□□ 2.64
C9orf3-215	ENST00000478473	POLD1	P28340	1107 aa		31.52	■■■□□ 2.64
C9orf3-215	ENST00000478473	SLC52A2	Q9HAB3	445 aa		31.5	■■■□□ 2.63
C9orf3-215	ENST00000478473	CIC	Q96RK0	1608 aa	Predicted RBP	31.49	■■■□□ 2.63
C9orf3-215	ENST00000478473	U2SURP	O15042	1029 aa	Known RBP	31.49	■■■□□ 2.63
C9orf3-215	ENST00000478473	RNMT	O43148	476 aa	Known RBP	31.49	■■■□□ 2.63
C9orf3-215	ENST00000478473	RC3H1	Q5TC82	1133 aa	Known RBP	31.49	■■■□□ 2.63
C9orf3-215	ENST00000478473	LGR6	Q9HBX8	967 aa		31.49	■■■□□ 2.63
C9orf3-215	ENST00000478473	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	31.47	■■■□□ 2.63
C9orf3-215	ENST00000478473	COL5A3	P25940	1745 aa	Predicted RBP	31.46	■■■□□ 2.63
C9orf3-215	ENST00000478473	CNTNAP4	Q9C0A0	1308 aa		31.46	■■■□□ 2.63
C9orf3-215	ENST00000478473	RSPH6A	Q9H0K4	717 aa		31.45	■■■□□ 2.63
C9orf3-215	ENST00000478473	NUDC	Q9Y266	331 aa		31.45	■■■□□ 2.63
C9orf3-215	ENST00000478473	MSH5	O43196	834 aa		31.44	■■■□□ 2.62
C9orf3-215	ENST00000478473	GAS2L2	Q8NHY3	880 aa		31.44	■■■□□ 2.62
C9orf3-215	ENST00000478473	RBM42	Q9BTD8	480 aa	Known RBP	31.44	■■■□□ 2.62
C9orf3-215	ENST00000478473	GNPAT	O15228	680 aa		31.42	■■■□□ 2.62
C9orf3-215	ENST00000478473	DCAF8L1	A6NGE4	600 aa		31.41	■■■□□ 2.62
C9orf3-215	ENST00000478473	VIRMA	Q69YN4	1812 aa	Known RBP	31.4	■■■□□ 2.62
C9orf3-215	ENST00000478473	ADRA2B	P18089	450 aa		31.4	■■■□□ 2.62
C9orf3-215	ENST00000478473	PTCD1	O75127	700 aa	Known RBP	31.39	■■■□□ 2.62
C9orf3-215	ENST00000478473	FCHSD2	O94868	740 aa		31.39	■■■□□ 2.62
C9orf3-215	ENST00000478473	GNAT3	A8MTJ3	354 aa		31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	RPS6KA4	O75676	772 aa		31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	PHF14	O94880	888 aa		31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	PRKAR2B	P31323	418 aa		31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	SMIM5	Q71RC9	77 aa		31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	PHACTR3	Q96KR7	559 aa		31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	RTCB	Q9Y3I0	505 aa	Known RBP	31.38	■■■□□ 2.61
C9orf3-215	ENST00000478473	MSL1	Q68DK7	614 aa		31.37	■■■□□ 2.61
C9orf3-215	ENST00000478473	IL17RE	Q8NFR9	667 aa		31.37	■■■□□ 2.61
C9orf3-215	ENST00000478473	TJP1	Q07157	1748 aa		31.37	■■■□□ 2.61
C9orf3-215	ENST00000478473	MYH14	Q7Z406	1995 aa	Known RBP	31.37	■■■□□ 2.61
C9orf3-215	ENST00000478473	CEMIP	Q8WUJ3	1361 aa		31.36	■■■□□ 2.61
C9orf3-215	ENST00000478473	KCP	Q6ZWJ8	1503 aa		31.35	■■■□□ 2.61
C9orf3-215	ENST00000478473	U2AF1L5	P0DN76	240 aa	Predicted RBP	31.34	■■■□□ 2.61
C9orf3-215	ENST00000478473	U2AF1	Q01081	240 aa	Known RBP eCLIP	31.34	■■■□□ 2.61	1e-6	■■■■□ 22.3
C9orf3-215	ENST00000478473	TRAPPC3L	Q5T215	181 aa		31.34	■■■□□ 2.61
C9orf3-215	ENST00000478473	VSIG10	Q8N0Z9	540 aa		31.33	■■■□□ 2.61
C9orf3-215	ENST00000478473	CRKL	P46109	303 aa	Known RBP	31.32	■■■□□ 2.6
C9orf3-215	ENST00000478473	CD2AP	Q9Y5K6	639 aa		31.32	■■■□□ 2.6
C9orf3-215	ENST00000478473	UBR2	Q8IWV8	1755 aa		31.31	■■■□□ 2.6
C9orf3-215	ENST00000478473	ARHGEF1	Q92888	912 aa	Known RBP	31.31	■■■□□ 2.6
C9orf3-215	ENST00000478473	SLC39A6	Q13433	755 aa		31.3	■■■□□ 2.6
C9orf3-215	ENST00000478473	RALBP1	Q15311	655 aa		31.3	■■■□□ 2.6
C9orf3-215	ENST00000478473	SIPA1L3	O60292	1781 aa	Predicted RBP	31.3	■■■□□ 2.6
C9orf3-215	ENST00000478473	INTS5	Q6P9B9	1019 aa	Known RBP	31.29	■■■□□ 2.6
C9orf3-215	ENST00000478473	UTRN	P46939	3433 aa		31.28	■■■□□ 2.6
C9orf3-215	ENST00000478473	NLGN2	Q8NFZ4	835 aa		31.28	■■■□□ 2.6
C9orf3-215	ENST00000478473	TEF	Q10587	303 aa		31.27	■■■□□ 2.6
C9orf3-215	ENST00000478473	DNAJC10	Q8IXB1	793 aa		31.27	■■■□□ 2.6
C9orf3-215	ENST00000478473	CYP19A1	P11511	503 aa	Predicted RBP	31.26	■■■□□ 2.59
C9orf3-215	ENST00000478473	NLGN1	Q8N2Q7	840 aa		31.26	■■■□□ 2.59
C9orf3-215	ENST00000478473	HTATSF1	O43719	755 aa	Known RBP	31.25	■■■□□ 2.59
C9orf3-215	ENST00000478473	DDX10	Q13206	875 aa	Known RBP	31.25	■■■□□ 2.59
C9orf3-215	ENST00000478473	GYS1	P13807	737 aa		31.24	■■■□□ 2.59
C9orf3-215	ENST00000478473	ZNF790	Q6PG37	636 aa		31.24	■■■□□ 2.59
C9orf3-215	ENST00000478473	C4A	P0C0L4	1744 aa		31.24	■■■□□ 2.59
C9orf3-215	ENST00000478473	RFC4	P35249	363 aa		31.23	■■■□□ 2.59
C9orf3-215	ENST00000478473	KLHL34	Q8N239	644 aa		31.23	■■■□□ 2.59
C9orf3-215	ENST00000478473	CCDC87	Q9NVE4	849 aa		31.23	■■■□□ 2.59
C9orf3-215	ENST00000478473	YY1	P25490	414 aa		31.21	■■■□□ 2.59
C9orf3-215	ENST00000478473	PLEKHF1	Q96S99	279 aa		31.21	■■■□□ 2.59
C9orf3-215	ENST00000478473	SOS1	Q07889	1333 aa	Predicted RBP	31.21	■■■□□ 2.59
C9orf3-215	ENST00000478473	TTC5	Q8N0Z6	440 aa		31.2	■■■□□ 2.59
C9orf3-215	ENST00000478473	GOLGB1	Q14789	3259 aa	Known RBP	31.2	■■■□□ 2.59
C9orf3-215	ENST00000478473	HEG1	Q9ULI3	1381 aa		31.19	■■■□□ 2.58
C9orf3-215	ENST00000478473	MMP10	P09238	476 aa		31.19	■■■□□ 2.58
C9orf3-215	ENST00000478473	ZNF496	Q96IT1	587 aa	Predicted RBP	31.19	■■■□□ 2.58
C9orf3-215	ENST00000478473	USP42	Q9H9J4	1324 aa	Known RBP	31.19	■■■□□ 2.58
C9orf3-215	ENST00000478473	TEX13A	Q9BXU3	409 aa	Predicted RBP	31.17	■■■□□ 2.58
C9orf3-215	ENST00000478473	ZEB1	P37275	1124 aa	Predicted RBP	31.16	■■■□□ 2.58
C9orf3-215	ENST00000478473	GPR162	Q16538	588 aa		31.16	■■■□□ 2.58
C9orf3-215	ENST00000478473	RTF1	Q92541	710 aa	Known RBP	31.16	■■■□□ 2.58
C9orf3-215	ENST00000478473	STARD3NL	O95772	234 aa		31.14	■■■□□ 2.58
C9orf3-215	ENST00000478473	FMNL2	Q96PY5	1086 aa		31.14	■■■□□ 2.58
C9orf3-215	ENST00000478473	PNN	Q9H307	717 aa	Known RBP	31.14	■■■□□ 2.58
C9orf3-215	ENST00000478473	ZBTB1	Q9Y2K1	713 aa		31.14	■■■□□ 2.58
C9orf3-215	ENST00000478473	MYBBP1A	Q9BQG0	1328 aa	Known RBP	31.14	■■■□□ 2.58
C9orf3-215	ENST00000478473	KIF13B	Q9NQT8	1826 aa		31.14	■■■□□ 2.58
C9orf3-215	ENST00000478473	BTBD11	A6QL63	1104 aa		31.13	■■■□□ 2.57
C9orf3-215	ENST00000478473	CHD4	Q14839	1912 aa		31.12	■■■□□ 2.57
C9orf3-215	ENST00000478473	MCM10	Q7L590	875 aa		31.12	■■■□□ 2.57
C9orf3-215	ENST00000478473	YBX3	P16989	372 aa	Known RBP eCLIP	31.11	■■■□□ 2.57	3e-7	■■□□□ 11.8
C9orf3-215	ENST00000478473	C10orf71	Q711Q0	1435 aa		31.11	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms