RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 NPM2Q86SE8 214 aaKnown RBP10.44□□□□□ -0.74
VPS50-212ENST00000476413 TRIM52Q96A61 297 aa10.44□□□□□ -0.74
VPS50-212ENST00000476413 RAB6BQ9NRW1 208 aa10.44□□□□□ -0.74
VPS50-212ENST00000476413 SEPT3Q9UH03 358 aa10.44□□□□□ -0.74
VPS50-212ENST00000476413 SERTAD1Q9UHV2 236 aa10.44□□□□□ -0.74
VPS50-212ENST00000476413 BACH1O14867 736 aa10.43□□□□□ -0.74
VPS50-212ENST00000476413 IL2RAP01589 272 aa10.43□□□□□ -0.74
VPS50-212ENST00000476413 SNIP1Q8TAD8 396 aaKnown RBP10.43□□□□□ -0.74
VPS50-212ENST00000476413 MKNK1Q9BUB5 465 aa10.43□□□□□ -0.74
VPS50-212ENST00000476413 TSPAN10Q9H1Z9 355 aaPredicted RBP10.43□□□□□ -0.74
VPS50-212ENST00000476413 ARHGEF10LQ9HCE6 1279 aa10.43□□□□□ -0.74
VPS50-212ENST00000476413 HRH3Q9Y5N1 445 aa10.43□□□□□ -0.74
VPS50-212ENST00000476413 J3QL48 77 aa10.42□□□□□ -0.74
VPS50-212ENST00000476413 ADH1AP07327 375 aa10.42□□□□□ -0.74
VPS50-212ENST00000476413 CBLBQ13191 982 aa10.42□□□□□ -0.74
VPS50-212ENST00000476413 MTFR1Q15390 333 aa10.42□□□□□ -0.74
VPS50-212ENST00000476413 FOXD4L5Q5VV16 416 aaPredicted RBP10.42□□□□□ -0.74
VPS50-212ENST00000476413 FOXD4L4Q8WXT5 416 aaPredicted RBP10.42□□□□□ -0.74
VPS50-212ENST00000476413 ITPKCQ96DU7 683 aa10.42□□□□□ -0.74
VPS50-212ENST00000476413 XAGE2Q96GT9 111 aa10.42□□□□□ -0.74
VPS50-212ENST00000476413 ECM1Q16610 540 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 TRIM67Q6ZTA4 783 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 Q6ZVU0 165 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 SCG3Q8WXD2 468 aaKnown RBP10.41□□□□□ -0.74
VPS50-212ENST00000476413 COL26A1Q96A83 441 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 TOR4AQ9NXH8 423 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 SCHIP1Q9P0W5 487 aaPredicted RBP10.41□□□□□ -0.74
VPS50-212ENST00000476413 EGFL7Q9UHF1 273 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 USP3Q9Y6I4 520 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 WASF2Q9Y6W5 498 aa10.41□□□□□ -0.74
VPS50-212ENST00000476413 FOXO3O43524 673 aa10.4□□□□□ -0.74
VPS50-212ENST00000476413 ZNF211Q13398 564 aaPredicted RBP10.4□□□□□ -0.74
VPS50-212ENST00000476413 ESCO1Q5FWF5 840 aa10.4□□□□□ -0.74
VPS50-212ENST00000476413 ZFAND3Q9H8U3 227 aa10.4□□□□□ -0.74
VPS50-212ENST00000476413 ATAD2Q6PL18 1390 aa10.39□□□□□ -0.75
VPS50-212ENST00000476413 A0A1W2PRU2 124 aa10.39□□□□□ -0.75
VPS50-212ENST00000476413 A6NJY4 79 aa10.39□□□□□ -0.75
VPS50-212ENST00000476413 SMTNP53814 917 aa10.39□□□□□ -0.75
VPS50-212ENST00000476413 NOM1Q5C9Z4 860 aaKnown RBP10.39□□□□□ -0.75
VPS50-212ENST00000476413 GTF3C2Q8WUA4 911 aaPredicted RBP10.39□□□□□ -0.75
VPS50-212ENST00000476413 IQSEC3Q9UPP2 1182 aaPredicted RBP10.39□□□□□ -0.75
VPS50-212ENST00000476413 DNMT3AQ9Y6K1 912 aaPredicted RBP10.39□□□□□ -0.75
VPS50-212ENST00000476413 ICMTO60725 284 aa10.38□□□□□ -0.75
VPS50-212ENST00000476413 ZIC2O95409 532 aaPredicted RBP10.38□□□□□ -0.75
VPS50-212ENST00000476413 TIMP2P16035 220 aa10.38□□□□□ -0.75
VPS50-212ENST00000476413 SMPD1P17405 629 aa10.38□□□□□ -0.75
VPS50-212ENST00000476413 DNAJC14Q6Y2X3 702 aaPredicted RBP10.38□□□□□ -0.75
VPS50-212ENST00000476413 ANO2Q9NQ90 1003 aa10.38□□□□□ -0.75
VPS50-212ENST00000476413 PTCD1O75127 700 aaKnown RBP10.37□□□□□ -0.75
VPS50-212ENST00000476413 ABL1P00519 1130 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 CLN3Q13286 438 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 TBCELQ5QJ74 424 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 SLC9A9Q8IVB4 645 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 ZNF295-AS1Q8N0V1 137 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 CNKSR1Q969H4 720 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 ESYT1Q9BSJ8 1104 aa10.37□□□□□ -0.75
VPS50-212ENST00000476413 H3BRB1 525 aa10.36□□□□□ -0.75
VPS50-212ENST00000476413 TNFRSF10AO00220 468 aa10.36□□□□□ -0.75
VPS50-212ENST00000476413 PTGIRP43119 386 aa10.36□□□□□ -0.75
VPS50-212ENST00000476413 MTMR3Q13615 1198 aa10.36□□□□□ -0.75
VPS50-212ENST00000476413 POTEAQ6S8J7 498 aa10.36□□□□□ -0.75
VPS50-212ENST00000476413 AGBL1Q96MI9 1066 aa10.36□□□□□ -0.75
VPS50-212ENST00000476413 FHDC1Q9C0D6 1143 aaPredicted RBP10.36□□□□□ -0.75
VPS50-212ENST00000476413 TUT1Q9H6E5 874 aaKnown RBP10.36□□□□□ -0.75
VPS50-212ENST00000476413 WDR4P57081 412 aaKnown RBP10.35□□□□□ -0.75
VPS50-212ENST00000476413 NAA30Q147X3 362 aaPredicted RBP10.35□□□□□ -0.75
VPS50-212ENST00000476413 STAG2Q8N3U4 1231 aa10.35□□□□□ -0.75
VPS50-212ENST00000476413 C2orf49Q9BVC5 232 aaPredicted RBP10.35□□□□□ -0.75
VPS50-212ENST00000476413 TTC24A2A3L6 582 aaPredicted RBP10.34□□□□□ -0.75
VPS50-212ENST00000476413 CDK2AP1O14519 115 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 PRR20EP86478 221 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 PRR20CP86479 221 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 PRR20DP86480 221 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 PRR20BP86481 221 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 PRR20AP86496 221 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 TLR1Q15399 786 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 CYP4X1Q8N118 509 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 ZNF428Q96B54 188 aa10.34□□□□□ -0.75
VPS50-212ENST00000476413 PPP1R12BO60237 982 aaPredicted RBP10.33□□□□□ -0.76
VPS50-212ENST00000476413 CHMP7Q8WUX9 453 aaPredicted RBP10.33□□□□□ -0.76
VPS50-212ENST00000476413 SAP130Q9H0E3 1048 aa10.33□□□□□ -0.76
VPS50-212ENST00000476413 ARHGAP4P98171 946 aa10.32□□□□□ -0.76
VPS50-212ENST00000476413 FKBP4Q02790 459 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS50-212ENST00000476413 CENPCQ03188 943 aa10.32□□□□□ -0.76
VPS50-212ENST00000476413 HELQQ8TDG4 1101 aa10.32□□□□□ -0.76
VPS50-212ENST00000476413 BIN2Q9UBW5 565 aaPredicted RBP10.32□□□□□ -0.76
VPS50-212ENST00000476413 NPR3P17342 541 aa10.31□□□□□ -0.76
VPS50-212ENST00000476413 PSMA6P60900 246 aaKnown RBP10.31□□□□□ -0.76
VPS50-212ENST00000476413 RELBQ01201 579 aa10.31□□□□□ -0.76
VPS50-212ENST00000476413 SF3B2Q13435 895 aaKnown RBP10.31□□□□□ -0.76
VPS50-212ENST00000476413 GLYCTKQ8IVS8 523 aa10.31□□□□□ -0.76
VPS50-212ENST00000476413 MEIOBQ8N635 442 aa10.31□□□□□ -0.76
VPS50-212ENST00000476413 ZDHHC1Q8WTX9 485 aa10.31□□□□□ -0.76
VPS50-212ENST00000476413 HPS1Q92902 700 aa10.31□□□□□ -0.76
VPS50-212ENST00000476413 EML1O00423 815 aa10.3□□□□□ -0.76
VPS50-212ENST00000476413 SH3PXD2AQ5TCZ1 1133 aa10.3□□□□□ -0.76
VPS50-212ENST00000476413 ZNF395Q9H8N7 513 aaPredicted RBP10.3□□□□□ -0.76
VPS50-212ENST00000476413 QTRT2Q9H974 415 aaKnown RBP10.3□□□□□ -0.76
VPS50-212ENST00000476413 MARSP56192 900 aaKnown RBP10.29□□□□□ -0.76
VPS50-212ENST00000476413 AMOTL2Q9Y2J4 779 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms