RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 DDX10Q13206 875 aaKnown RBP28.42■■■□□ 2.14
LIME1-204ENST00000476183 COL23A1Q86Y22 540 aaPredicted RBP28.42■■■□□ 2.14
LIME1-204ENST00000476183 SLC4A9Q96Q91 983 aa28.42■■■□□ 2.14
LIME1-204ENST00000476183 VIRMAQ69YN4 1812 aaKnown RBP28.41■■■□□ 2.14
LIME1-204ENST00000476183 AMIGO3Q86WK7 504 aa28.41■■■□□ 2.14
LIME1-204ENST00000476183 SLC16A10Q8TF71 515 aa28.41■■■□□ 2.14
LIME1-204ENST00000476183 ATP6V1AP38606 617 aa28.4■■■□□ 2.14
LIME1-204ENST00000476183 RSPH6AQ9H0K4 717 aa28.4■■■□□ 2.14
LIME1-204ENST00000476183 ADAMTS7Q9UKP4 1686 aa28.39■■■□□ 2.14
LIME1-204ENST00000476183 RNMTO43148 476 aaKnown RBP28.39■■■□□ 2.14
LIME1-204ENST00000476183 HMGB2P26583 209 aaKnown RBP28.39■■■□□ 2.14
LIME1-204ENST00000476183 NUDCQ9Y266 331 aa28.39■■■□□ 2.14
LIME1-204ENST00000476183 COL24A1Q17RW2 1714 aa28.38■■■□□ 2.13
LIME1-204ENST00000476183 UBR3Q6ZT12 1888 aa28.38■■■□□ 2.13
LIME1-204ENST00000476183 PRKAR2BP31323 418 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 SMIM5Q71RC9 77 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 PHACTR3Q96KR7 559 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 AK7Q96M32 723 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 RBM42Q9BTD8 480 aaKnown RBP28.37■■■□□ 2.13
LIME1-204ENST00000476183 SLC52A2Q9HAB3 445 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 MRC1P22897 1456 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 ZNF831Q5JPB2 1677 aa28.36■■■□□ 2.13
LIME1-204ENST00000476183 U2AF1L5P0DN76 240 aaPredicted RBP28.36■■■□□ 2.13
LIME1-204ENST00000476183 U2AF1Q01081 240 aaKnown RBP eCLIP28.36■■■□□ 2.13
LIME1-204ENST00000476183 MSH5O43196 834 aa28.35■■■□□ 2.13
LIME1-204ENST00000476183 GAS2L2Q8NHY3 880 aa28.34■■■□□ 2.13
LIME1-204ENST00000476183 ZEB1P37275 1124 aaPredicted RBP28.33■■■□□ 2.13
LIME1-204ENST00000476183 PTCD1O75127 700 aaKnown RBP28.32■■■□□ 2.12
LIME1-204ENST00000476183 FLAD1Q8NFF5 587 aa28.32■■■□□ 2.12
LIME1-204ENST00000476183 ARXQ96QS3 562 aa28.32■■■□□ 2.12
LIME1-204ENST00000476183 MAP3K5Q99683 1374 aa28.32■■■□□ 2.12
LIME1-204ENST00000476183 COL5A3P25940 1745 aaPredicted RBP28.32■■■□□ 2.12
LIME1-204ENST00000476183 PHF14O94880 888 aa28.31■■■□□ 2.12
LIME1-204ENST00000476183 FHDC1Q9C0D6 1143 aaPredicted RBP28.31■■■□□ 2.12
LIME1-204ENST00000476183 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.3■■■□□ 2.12
LIME1-204ENST00000476183 GNAT3A8MTJ3 354 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 GNPATO15228 680 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 FCHSD2O94868 740 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 SLC39A6Q13433 755 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 RALBP1Q15311 655 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 MSL1Q68DK7 614 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 IL17REQ8NFR9 667 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 SSFA2P28290 1259 aa28.28■■■□□ 2.12
LIME1-204ENST00000476183 POLD1P28340 1107 aa28.28■■■□□ 2.12
LIME1-204ENST00000476183 SYT17Q9BSW7 474 aa28.27■■■□□ 2.12
LIME1-204ENST00000476183 MYH14Q7Z406 1995 aaKnown RBP28.27■■■□□ 2.12
LIME1-204ENST00000476183 TJP1Q07157 1748 aa28.26■■■□□ 2.12
LIME1-204ENST00000476183 RC3H1Q5TC82 1133 aaKnown RBP28.25■■■□□ 2.11
LIME1-204ENST00000476183 CICQ96RK0 1608 aaPredicted RBP28.25■■■□□ 2.11
LIME1-204ENST00000476183 CNTNAP4Q9C0A0 1308 aa28.24■■■□□ 2.11
LIME1-204ENST00000476183 KCPQ6ZWJ8 1503 aa28.24■■■□□ 2.11
LIME1-204ENST00000476183 SIPA1L3O60292 1781 aaPredicted RBP28.23■■■□□ 2.11
LIME1-204ENST00000476183 CEMIPQ8WUJ3 1361 aa28.23■■■□□ 2.11
LIME1-204ENST00000476183 RTCBQ9Y3I0 505 aaKnown RBP28.21■■■□□ 2.11
LIME1-204ENST00000476183 UBR2Q8IWV8 1755 aa28.2■■■□□ 2.11
LIME1-204ENST00000476183 CRKLP46109 303 aaKnown RBP28.2■■■□□ 2.1
LIME1-204ENST00000476183 TEFQ10587 303 aa28.2■■■□□ 2.1
LIME1-204ENST00000476183 DNAJC10Q8IXB1 793 aa28.2■■■□□ 2.1
LIME1-204ENST00000476183 RPS6KA4O75676 772 aa28.19■■■□□ 2.1
LIME1-204ENST00000476183 MYBBP1AQ9BQG0 1328 aaKnown RBP28.18■■■□□ 2.1
LIME1-204ENST00000476183 PLEKHF1Q96S99 279 aa28.18■■■□□ 2.1
LIME1-204ENST00000476183 TRAPPC3LQ5T215 181 aa28.17■■■□□ 2.1
LIME1-204ENST00000476183 KLHL34Q8N239 644 aa28.17■■■□□ 2.1
LIME1-204ENST00000476183 INTS5Q6P9B9 1019 aaKnown RBP28.16■■■□□ 2.1
LIME1-204ENST00000476183 MCM10Q7L590 875 aa28.16■■■□□ 2.1
LIME1-204ENST00000476183 ARHGEF1Q92888 912 aaKnown RBP28.16■■■□□ 2.1
LIME1-204ENST00000476183 UTRNP46939 3433 aa28.15■■■□□ 2.1
LIME1-204ENST00000476183 ADRA2BP18089 450 aa28.15■■■□□ 2.1
LIME1-204ENST00000476183 DCTN1Q14203 1278 aa28.14■■■□□ 2.1
LIME1-204ENST00000476183 ZNF790Q6PG37 636 aa28.14■■■□□ 2.1
LIME1-204ENST00000476183 TTC5Q8N0Z6 440 aa28.14■■■□□ 2.1
LIME1-204ENST00000476183 C4AP0C0L4 1744 aa28.13■■■□□ 2.09
LIME1-204ENST00000476183 CYP19A1P11511 503 aaPredicted RBP28.13■■■□□ 2.09
LIME1-204ENST00000476183 VSIG10Q8N0Z9 540 aa28.13■■■□□ 2.09
LIME1-204ENST00000476183 RTF1Q92541 710 aaKnown RBP28.13■■■□□ 2.09
LIME1-204ENST00000476183 DLG5Q8TDM6 1919 aa28.12■■■□□ 2.09
LIME1-204ENST00000476183 ZNF496Q96IT1 587 aaPredicted RBP28.12■■■□□ 2.09
LIME1-204ENST00000476183 PRKRIP1Q9H875 184 aaPredicted RBP28.12■■■□□ 2.09
LIME1-204ENST00000476183 KCNQ3O43525 872 aa28.11■■■□□ 2.09
LIME1-204ENST00000476183 HTATSF1O43719 755 aaKnown RBP28.11■■■□□ 2.09
LIME1-204ENST00000476183 NLGN2Q8NFZ4 835 aa28.11■■■□□ 2.09
LIME1-204ENST00000476183 CCDC87Q9NVE4 849 aa28.11■■■□□ 2.09
LIME1-204ENST00000476183 BTBD11A6QL63 1104 aa28.09■■■□□ 2.09
LIME1-204ENST00000476183 RFC4P35249 363 aa28.09■■■□□ 2.09
LIME1-204ENST00000476183 HEG1Q9ULI3 1381 aa28.09■■■□□ 2.09
LIME1-204ENST00000476183 GOLGB1Q14789 3259 aaKnown RBP28.09■■■□□ 2.09
LIME1-204ENST00000476183 DCAF8L1A6NGE4 600 aa28.08■■■□□ 2.09
LIME1-204ENST00000476183 NEFMP07197 916 aa28.08■■■□□ 2.09
LIME1-204ENST00000476183 GYS1P13807 737 aa28.08■■■□□ 2.09
LIME1-204ENST00000476183 NFE2L2Q16236 605 aa28.07■■■□□ 2.08
LIME1-204ENST00000476183 ZBTB1Q9Y2K1 713 aa28.07■■■□□ 2.08
LIME1-204ENST00000476183 SOS1Q07889 1333 aaPredicted RBP28.07■■■□□ 2.08
LIME1-204ENST00000476183 MMP10P09238 476 aa28.06■■■□□ 2.08
LIME1-204ENST00000476183 SRP68Q9UHB9 627 aaKnown RBP28.06■■■□□ 2.08
LIME1-204ENST00000476183 FMNL2Q96PY5 1086 aa28.05■■■□□ 2.08
LIME1-204ENST00000476183 PNNQ9H307 717 aaKnown RBP28.05■■■□□ 2.08
LIME1-204ENST00000476183 USP42Q9H9J4 1324 aaKnown RBP28.04■■■□□ 2.08
LIME1-204ENST00000476183 MAPK8IP3Q9UPT6 1336 aa28.04■■■□□ 2.08
LIME1-204ENST00000476183 NLGN1Q8N2Q7 840 aa28.04■■■□□ 2.08
LIME1-204ENST00000476183 CD2APQ9Y5K6 639 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms