RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 ZNF784Q8NCA9 323 aaPredicted RBP33.46■■■□□ 2.95
PTCH1-210ENST00000468211 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.45■■■□□ 2.95
PTCH1-210ENST00000468211 ATP6V1AP38606 617 aa33.45■■■□□ 2.95
PTCH1-210ENST00000468211 ZNF530Q6P9A1 599 aaPredicted RBP33.44■■■□□ 2.94
PTCH1-210ENST00000468211 ERVV-2B6SEH9 535 aa33.43■■■□□ 2.94
PTCH1-210ENST00000468211 DCAF5Q96JK2 942 aa33.43■■■□□ 2.94
PTCH1-210ENST00000468211 KDRP35968 1356 aa33.43■■■□□ 2.94
PTCH1-210ENST00000468211 IL13P35225 146 aa33.42■■■□□ 2.94
PTCH1-210ENST00000468211 SULT6B1Q6IMI4 303 aa33.42■■■□□ 2.94
PTCH1-210ENST00000468211 SLC4A9Q96Q91 983 aa33.42■■■□□ 2.94
PTCH1-210ENST00000468211 ZNF831Q5JPB2 1677 aa33.4■■■□□ 2.94
PTCH1-210ENST00000468211 HSP90AB1P08238 724 aaKnown RBP33.4■■■□□ 2.94
PTCH1-210ENST00000468211 SSFA2P28290 1259 aa33.4■■■□□ 2.94
PTCH1-210ENST00000468211 AMOTQ4VCS5 1084 aa33.4■■■□□ 2.94
PTCH1-210ENST00000468211 GNPATO15228 680 aa33.39■■■□□ 2.94
PTCH1-210ENST00000468211 PER1O15534 1290 aaPredicted RBP33.39■■■□□ 2.94
PTCH1-210ENST00000468211 YBX3P16989 372 aaKnown RBP eCLIP33.39■■■□□ 2.94
PTCH1-210ENST00000468211 COL5A3P25940 1745 aaPredicted RBP33.39■■■□□ 2.94
PTCH1-210ENST00000468211 RBM42Q9BTD8 480 aaKnown RBP33.36■■■□□ 2.93
PTCH1-210ENST00000468211 SCN11AQ9UI33 1791 aa33.36■■■□□ 2.93
PTCH1-210ENST00000468211 MTHFSP49914 203 aa33.35■■■□□ 2.93
PTCH1-210ENST00000468211 CABP4P57796 275 aa33.35■■■□□ 2.93
PTCH1-210ENST00000468211 CD2APQ9Y5K6 639 aa33.35■■■□□ 2.93
PTCH1-210ENST00000468211 MYH14Q7Z406 1995 aaKnown RBP33.34■■■□□ 2.93
PTCH1-210ENST00000468211 C1orf141Q5JVX7 400 aa33.32■■■□□ 2.92
PTCH1-210ENST00000468211 VIRMAQ69YN4 1812 aaKnown RBP33.32■■■□□ 2.92
PTCH1-210ENST00000468211 CC2D1BQ5T0F9 858 aaKnown RBP33.31■■■□□ 2.92
PTCH1-210ENST00000468211 NFATC2IPQ8NCF5 419 aa33.29■■■□□ 2.92
PTCH1-210ENST00000468211 HMOX1P09601 288 aa33.26■■■□□ 2.91
PTCH1-210ENST00000468211 TJP1Q07157 1748 aa33.25■■■□□ 2.91
PTCH1-210ENST00000468211 GRIN3BO60391 1043 aa33.25■■■□□ 2.91
PTCH1-210ENST00000468211 PTCD1O75127 700 aaKnown RBP33.25■■■□□ 2.91
PTCH1-210ENST00000468211 RTCBQ9Y3I0 505 aaKnown RBP33.25■■■□□ 2.91
PTCH1-210ENST00000468211 C4AP0C0L4 1744 aa33.25■■■□□ 2.91
PTCH1-210ENST00000468211 RC3H1Q5TC82 1133 aaKnown RBP33.24■■■□□ 2.91
PTCH1-210ENST00000468211 CNTNAP4Q9C0A0 1308 aa33.24■■■□□ 2.91
PTCH1-210ENST00000468211 TRAPPC3LQ5T215 181 aa33.23■■■□□ 2.91
PTCH1-210ENST00000468211 CNGB1Q14028 1251 aaPredicted RBP33.22■■■□□ 2.91
PTCH1-210ENST00000468211 ARHGEF1Q92888 912 aaKnown RBP33.22■■■□□ 2.91
PTCH1-210ENST00000468211 MMP10P09238 476 aa33.21■■■□□ 2.91
PTCH1-210ENST00000468211 AKAP4Q5JQC9 854 aa33.21■■■□□ 2.91
PTCH1-210ENST00000468211 LGR6Q9HBX8 967 aa33.21■■■□□ 2.91
PTCH1-210ENST00000468211 WWC3Q9ULE0 1092 aa33.21■■■□□ 2.91
PTCH1-210ENST00000468211 CICQ96RK0 1608 aaPredicted RBP33.2■■■□□ 2.91
PTCH1-210ENST00000468211 RPS6KA4O75676 772 aa33.2■■■□□ 2.91
PTCH1-210ENST00000468211 KIF13BQ9NQT8 1826 aa33.2■■■□□ 2.91
PTCH1-210ENST00000468211 DIAPH1O60610 1272 aaKnown RBP33.19■■■□□ 2.9
PTCH1-210ENST00000468211 KIAA1551Q9HCM1 1747 aa33.19■■■□□ 2.9
PTCH1-210ENST00000468211 COL3A1P02461 1466 aaPredicted RBP33.18■■■□□ 2.9
PTCH1-210ENST00000468211 ADAMTS7Q9UKP4 1686 aa33.17■■■□□ 2.9
PTCH1-210ENST00000468211 NPC1L1Q9UHC9 1359 aa33.17■■■□□ 2.9
PTCH1-210ENST00000468211 ADRA2BP18089 450 aa33.16■■■□□ 2.9
PTCH1-210ENST00000468211 CRKLP46109 303 aaKnown RBP33.16■■■□□ 2.9
PTCH1-210ENST00000468211 MTHFSDQ2M296 383 aaKnown RBP33.16■■■□□ 2.9
PTCH1-210ENST00000468211 MRC1P22897 1456 aa33.16■■■□□ 2.9
PTCH1-210ENST00000468211 N4BP2Q86UW6 1770 aaPredicted RBP33.16■■■□□ 2.9
PTCH1-210ENST00000468211 GYS1P13807 737 aa33.15■■■□□ 2.9
PTCH1-210ENST00000468211 SLC52A2Q9HAB3 445 aa33.15■■■□□ 2.9
PTCH1-210ENST00000468211 RNMTO43148 476 aaKnown RBP33.14■■■□□ 2.9
PTCH1-210ENST00000468211 NLGN1Q8N2Q7 840 aa33.14■■■□□ 2.9
PTCH1-210ENST00000468211 RFC4P35249 363 aa33.13■■■□□ 2.89
PTCH1-210ENST00000468211 SLC39A6Q13433 755 aa33.1■■■□□ 2.89
PTCH1-210ENST00000468211 PXDNLA1KZ92 1463 aa33.1■■■□□ 2.89
PTCH1-210ENST00000468211 INTS5Q6P9B9 1019 aaKnown RBP33.09■■■□□ 2.89
PTCH1-210ENST00000468211 DNAJC10Q8IXB1 793 aa33.09■■■□□ 2.89
PTCH1-210ENST00000468211 SRP68Q9UHB9 627 aaKnown RBP33.09■■■□□ 2.89
PTCH1-210ENST00000468211 KCPQ6ZWJ8 1503 aa33.08■■■□□ 2.89
PTCH1-210ENST00000468211 C10orf71Q711Q0 1435 aa33.08■■■□□ 2.89
PTCH1-210ENST00000468211 C1QTNF8P60827 252 aa33.07■■■□□ 2.88
PTCH1-210ENST00000468211 ATP10DQ9P241 1426 aa33.05■■■□□ 2.88
PTCH1-210ENST00000468211 U2SURPO15042 1029 aaKnown RBP33.05■■■□□ 2.88
PTCH1-210ENST00000468211 UBR2Q8IWV8 1755 aa33.05■■■□□ 2.88
PTCH1-210ENST00000468211 USP42Q9H9J4 1324 aaKnown RBP33.03■■■□□ 2.88
PTCH1-210ENST00000468211 BRCA1P38398 1863 aaKnown RBP33.03■■■□□ 2.88
PTCH1-210ENST00000468211 ADCY9O60503 1353 aa33.02■■■□□ 2.88
PTCH1-210ENST00000468211 A0A0G2JLW4 131 aa33.02■■■□□ 2.88
PTCH1-210ENST00000468211 GIGYF1O75420 1035 aaPredicted RBP33.02■■■□□ 2.88
PTCH1-210ENST00000468211 FKBP8Q14318 412 aa33.02■■■□□ 2.88
PTCH1-210ENST00000468211 CYP19A1P11511 503 aaPredicted RBP33.01■■■□□ 2.87
PTCH1-210ENST00000468211 CCDC87Q9NVE4 849 aa33.01■■■□□ 2.87
PTCH1-210ENST00000468211 PARP3Q9Y6F1 533 aa33.01■■■□□ 2.87
PTCH1-210ENST00000468211 TGFB2P61812 414 aa33■■■□□ 2.87
PTCH1-210ENST00000468211 SIPA1L3O60292 1781 aaPredicted RBP33■■■□□ 2.87
PTCH1-210ENST00000468211 DDR1Q08345 913 aa32.99■■■□□ 2.87
PTCH1-210ENST00000468211 SOS1Q07889 1333 aaPredicted RBP32.98■■■□□ 2.87
PTCH1-210ENST00000468211 DPEP1P16444 411 aa32.97■■■□□ 2.87
PTCH1-210ENST00000468211 IL17REQ8NFR9 667 aa32.97■■■□□ 2.87
PTCH1-210ENST00000468211 BCS1LQ9Y276 419 aa32.94■■■□□ 2.86
PTCH1-210ENST00000468211 ZBTB1Q9Y2K1 713 aa32.94■■■□□ 2.86
PTCH1-210ENST00000468211 SENP3-EIF4A1A0A087X0R7 540 aa32.93■■■□□ 2.86
PTCH1-210ENST00000468211 USPL1Q5W0Q7 1092 aa32.93■■■□□ 2.86
PTCH1-210ENST00000468211 PHACTR3Q96KR7 559 aa32.93■■■□□ 2.86
PTCH1-210ENST00000468211 GNAT3A8MTJ3 354 aa32.92■■■□□ 2.86
PTCH1-210ENST00000468211 KCNA3P22001 575 aa32.92■■■□□ 2.86
PTCH1-210ENST00000468211 GAS2L2Q8NHY3 880 aa32.92■■■□□ 2.86
PTCH1-210ENST00000468211 AFDNP55196 1824 aaKnown RBP32.91■■■□□ 2.86
PTCH1-210ENST00000468211 TM4SF1P30408 202 aa32.91■■■□□ 2.86
PTCH1-210ENST00000468211 VSIG10Q8N0Z9 540 aa32.91■■■□□ 2.86
PTCH1-210ENST00000468211 ZNF526Q8TF50 670 aaPredicted RBP32.91■■■□□ 2.86
PTCH1-210ENST00000468211 RSPH6AQ9H0K4 717 aa32.9■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms