RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SBF1O95248 1867 aa16.47■□□□□ 0.23
SQSTM1-206ENST00000466342 FCHSD2O94868 740 aa16.46■□□□□ 0.23
SQSTM1-206ENST00000466342 MMP10P09238 476 aa16.46■□□□□ 0.23
SQSTM1-206ENST00000466342 NBPF6Q5VWK0 638 aa16.46■□□□□ 0.23
SQSTM1-206ENST00000466342 RAPGEF4Q8WZA2 1011 aa16.46■□□□□ 0.23
SQSTM1-206ENST00000466342 NBPF4Q96M43 638 aa16.46■□□□□ 0.23
SQSTM1-206ENST00000466342 MAP3K19Q56UN5 1328 aa16.45■□□□□ 0.22
SQSTM1-206ENST00000466342 C10orf71Q711Q0 1435 aa16.45■□□□□ 0.22
SQSTM1-206ENST00000466342 KCPQ6ZWJ8 1503 aa16.45■□□□□ 0.22
SQSTM1-206ENST00000466342 SMC1BQ8NDV3 1235 aa16.45■□□□□ 0.22
SQSTM1-206ENST00000466342 TATP17735 454 aaPredicted RBP16.44■□□□□ 0.22
SQSTM1-206ENST00000466342 PCDH11XQ9BZA7 1347 aa16.44■□□□□ 0.22
SQSTM1-206ENST00000466342 PCDH11YQ9BZA8 1340 aa16.44■□□□□ 0.22
SQSTM1-206ENST00000466342 DPEP1P16444 411 aa16.43■□□□□ 0.22
SQSTM1-206ENST00000466342 COG3Q96JB2 828 aa16.43■□□□□ 0.22
SQSTM1-206ENST00000466342 FBLN1P23142 703 aa16.42■□□□□ 0.22
SQSTM1-206ENST00000466342 NLGN1Q8N2Q7 840 aa16.42■□□□□ 0.22
SQSTM1-206ENST00000466342 USHBP1Q8N6Y0 703 aa16.42■□□□□ 0.22
SQSTM1-206ENST00000466342 LINC00116Q8NCU8 138 aa16.42■□□□□ 0.22
SQSTM1-206ENST00000466342 GNPATO15228 680 aa16.41■□□□□ 0.22
SQSTM1-206ENST00000466342 PIGBQ92521 554 aa16.41■□□□□ 0.22
SQSTM1-206ENST00000466342 LOC102724428A0A0B4J2F2 783 aa16.4■□□□□ 0.22
SQSTM1-206ENST00000466342 CYP27B1O15528 508 aa16.4■□□□□ 0.22
SQSTM1-206ENST00000466342 KCNA3P22001 575 aa16.4■□□□□ 0.22
SQSTM1-206ENST00000466342 SIK1P57059 783 aa16.4■□□□□ 0.22
SQSTM1-206ENST00000466342 CCDC87Q9NVE4 849 aa16.4■□□□□ 0.22
SQSTM1-206ENST00000466342 FYB1O15117 783 aa16.39■□□□□ 0.21
SQSTM1-206ENST00000466342 RNF181Q9P0P0 153 aa16.39■□□□□ 0.21
SQSTM1-206ENST00000466342 KIF20BQ96Q89 1820 aa16.39■□□□□ 0.21
SQSTM1-206ENST00000466342 C4AP0C0L4 1744 aa16.39■□□□□ 0.21
SQSTM1-206ENST00000466342 POLR3GLQ9BT43 218 aa16.38■□□□□ 0.21
SQSTM1-206ENST00000466342 PIM2Q9P1W9 311 aa16.38■□□□□ 0.21
SQSTM1-206ENST00000466342 ATP6V1AP38606 617 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 ITPK1Q13572 414 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 TRAPPC3LQ5T215 181 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 DCAF5Q96JK2 942 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 PCDH10Q9P2E7 1040 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 KIF7Q2M1P5 1343 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 RTL1A6NKG5 1358 aa16.37■□□□□ 0.21
SQSTM1-206ENST00000466342 CCDC88AQ3V6T2 1871 aa16.36■□□□□ 0.21
SQSTM1-206ENST00000466342 SMG6Q86US8 1419 aaKnown RBP16.36■□□□□ 0.21
SQSTM1-206ENST00000466342 NKX1-1Q15270 411 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-206ENST00000466342 DALRD3Q5D0E6 543 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-206ENST00000466342 GGNBP2Q9H3C7 697 aa16.35■□□□□ 0.21
SQSTM1-206ENST00000466342 RTCBQ9Y3I0 505 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-206ENST00000466342 PARP3Q9Y6F1 533 aa16.35■□□□□ 0.21
SQSTM1-206ENST00000466342 VEGFAP15692 232 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-206ENST00000466342 RRS1Q15050 365 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-206ENST00000466342 ARHGEF1Q92888 912 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-206ENST00000466342 CARD14Q9BXL6 1004 aa16.33■□□□□ 0.2
SQSTM1-206ENST00000466342 ASAP1Q9ULH1 1129 aa16.33■□□□□ 0.2
SQSTM1-206ENST00000466342 ANKRD26Q9UPS8 1709 aa16.33■□□□□ 0.2
SQSTM1-206ENST00000466342 GYS1P13807 737 aa16.32■□□□□ 0.2
SQSTM1-206ENST00000466342 TMOD3Q9NYL9 352 aa16.32■□□□□ 0.2
SQSTM1-206ENST00000466342 ZC3H4Q9UPT8 1303 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-206ENST00000466342 WASHC2AQ641Q2 1341 aa16.31■□□□□ 0.2
SQSTM1-206ENST00000466342 GLTPD2A6NH11 291 aa16.31■□□□□ 0.2
SQSTM1-206ENST00000466342 ADRA2BP18089 450 aa16.31■□□□□ 0.2
SQSTM1-206ENST00000466342 PRDM10Q9NQV6 1147 aa16.31■□□□□ 0.2
SQSTM1-206ENST00000466342 RFC4P35249 363 aa16.3■□□□□ 0.2
SQSTM1-206ENST00000466342 HSP90AB2PQ58FF8 381 aa16.3■□□□□ 0.2
SQSTM1-206ENST00000466342 ZNF831Q5JPB2 1677 aa16.3■□□□□ 0.2
SQSTM1-206ENST00000466342 INSRP06213 1382 aa16.29■□□□□ 0.2
SQSTM1-206ENST00000466342 KIF24Q5T7B8 1368 aa16.29■□□□□ 0.2
SQSTM1-206ENST00000466342 RC3H1Q5TC82 1133 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-206ENST00000466342 ATG3Q9NT62 314 aa16.29■□□□□ 0.2
SQSTM1-206ENST00000466342 SPG7Q9UQ90 795 aa16.29■□□□□ 0.2
SQSTM1-206ENST00000466342 MYH14Q7Z406 1995 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-206ENST00000466342 COL5A3P25940 1745 aaPredicted RBP16.28■□□□□ 0.2
SQSTM1-206ENST00000466342 FOXN1O15353 648 aa16.28■□□□□ 0.2
SQSTM1-206ENST00000466342 RPS6KA4O75676 772 aa16.27■□□□□ 0.2
SQSTM1-206ENST00000466342 PANK3Q9H999 370 aa16.27■□□□□ 0.2
SQSTM1-206ENST00000466342 KDM6AO15550 1401 aaPredicted RBP16.27■□□□□ 0.19
SQSTM1-206ENST00000466342 LMNB1P20700 586 aa16.26■□□□□ 0.19
SQSTM1-206ENST00000466342 CHRNA5P30532 468 aa16.26■□□□□ 0.19
SQSTM1-206ENST00000466342 CREBZFQ9NS37 354 aa16.26■□□□□ 0.19
SQSTM1-206ENST00000466342 SLC4A9Q96Q91 983 aa16.25■□□□□ 0.19
SQSTM1-206ENST00000466342 MKRN1Q9UHC7 482 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-206ENST00000466342 TIAM2Q8IVF5 1701 aa16.25■□□□□ 0.19
SQSTM1-206ENST00000466342 FLT4P35916 1363 aa16.25■□□□□ 0.19
SQSTM1-206ENST00000466342 POTECB2RU33 542 aa16.24■□□□□ 0.19
SQSTM1-206ENST00000466342 RASSF7Q02833 373 aa16.24■□□□□ 0.19
SQSTM1-206ENST00000466342 FAM161AQ3B820 660 aa16.24■□□□□ 0.19
SQSTM1-206ENST00000466342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.24■□□□□ 0.19
SQSTM1-206ENST00000466342 KDRP35968 1356 aa16.24■□□□□ 0.19
SQSTM1-206ENST00000466342 CNTNAP4Q9C0A0 1308 aa16.23■□□□□ 0.19
SQSTM1-206ENST00000466342 CTCFP49711 727 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-206ENST00000466342 IFNL2Q8IZJ0 200 aa16.23■□□□□ 0.19
SQSTM1-206ENST00000466342 RBM42Q9BTD8 480 aaKnown RBP16.23■□□□□ 0.19
SQSTM1-206ENST00000466342 DICER1Q9UPY3 1922 aaKnown RBP16.23■□□□□ 0.19
SQSTM1-206ENST00000466342 VIRMAQ69YN4 1812 aaKnown RBP16.22■□□□□ 0.19
SQSTM1-206ENST00000466342 NCAPD2Q15021 1401 aa16.21■□□□□ 0.19
SQSTM1-206ENST00000466342 PHKG2P15735 406 aa16.21■□□□□ 0.19
SQSTM1-206ENST00000466342 DDR1Q08345 913 aa16.21■□□□□ 0.19
SQSTM1-206ENST00000466342 DPY19L2Q6NUT2 758 aa16.21■□□□□ 0.19
SQSTM1-206ENST00000466342 EMILIN1Q9Y6C2 1016 aa16.21■□□□□ 0.19
SQSTM1-206ENST00000466342 AFDNP55196 1824 aaKnown RBP16.2■□□□□ 0.18
SQSTM1-206ENST00000466342 FKBP8Q14318 412 aa16.2■□□□□ 0.18
SQSTM1-206ENST00000466342 AIDAQ96BJ3 306 aa16.2■□□□□ 0.18
SQSTM1-206ENST00000466342 DLEC1Q9Y238 1755 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms