RNA–Protein interactions for RNA: ENST00000462130.1

HDLBP-230, Transcript of high density lipoprotein binding protein, human

TSL 4

Gene HDLBP, Length 464 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-230	ENST00000462130	POLR3GL	Q9BT43	218 aa		13.93	□□□□□ -0.18
HDLBP-230	ENST00000462130	SMARCC1	Q92922	1105 aa	Predicted RBP	13.92	□□□□□ -0.18
HDLBP-230	ENST00000462130	GOLGB1	Q14789	3259 aa	Known RBP	13.92	□□□□□ -0.18
HDLBP-230	ENST00000462130	ANKRD26	Q9UPS8	1709 aa		13.92	□□□□□ -0.18
HDLBP-230	ENST00000462130	C4B	P0C0L5	1744 aa		13.91	□□□□□ -0.18
HDLBP-230	ENST00000462130	MKRN4P	Q13434	485 aa	Predicted RBP	13.91	□□□□□ -0.18
HDLBP-230	ENST00000462130	SPG7	Q9UQ90	795 aa		13.91	□□□□□ -0.18
HDLBP-230	ENST00000462130	GRIN3B	O60391	1043 aa		13.9	□□□□□ -0.18
HDLBP-230	ENST00000462130	HSPA5	P11021	654 aa	Known RBP	13.9	□□□□□ -0.18
HDLBP-230	ENST00000462130	AK7	Q96M32	723 aa		13.9	□□□□□ -0.18
HDLBP-230	ENST00000462130	UBR3	Q6ZT12	1888 aa		13.9	□□□□□ -0.18
HDLBP-230	ENST00000462130	WASHC2A	Q641Q2	1341 aa		13.9	□□□□□ -0.19
HDLBP-230	ENST00000462130	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
HDLBP-230	ENST00000462130	SENP3-EIF4A1	A0A087X0R7	540 aa		13.88	□□□□□ -0.19
HDLBP-230	ENST00000462130	C1QTNF8	P60827	252 aa		13.88	□□□□□ -0.19
HDLBP-230	ENST00000462130	PIGB	Q92521	554 aa		13.88	□□□□□ -0.19
HDLBP-230	ENST00000462130	EYA1	Q99502	592 aa		13.88	□□□□□ -0.19
HDLBP-230	ENST00000462130	PHF14	O94880	888 aa		13.87	□□□□□ -0.19
HDLBP-230	ENST00000462130	NKX1-1	Q15270	411 aa	Predicted RBP	13.87	□□□□□ -0.19
HDLBP-230	ENST00000462130	TMOD3	Q9NYL9	352 aa		13.87	□□□□□ -0.19
HDLBP-230	ENST00000462130	NCAPD2	Q15021	1401 aa		13.87	□□□□□ -0.19
HDLBP-230	ENST00000462130	GIGYF1	O75420	1035 aa	Predicted RBP	13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	YBX3	P16989	372 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	TNNT2	P45379	298 aa	Predicted RBP	13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	IFNL2	Q8IZJ0	200 aa		13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	POLK	Q9UBT6	870 aa		13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	CD2AP	Q9Y5K6	639 aa		13.86	□□□□□ -0.19
HDLBP-230	ENST00000462130	LOC102724428	A0A0B4J2F2	783 aa		13.85	□□□□□ -0.19
HDLBP-230	ENST00000462130	SIK1	P57059	783 aa		13.85	□□□□□ -0.19
HDLBP-230	ENST00000462130	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.84	□□□□□ -0.19
HDLBP-230	ENST00000462130	PHKG2	P15735	406 aa		13.84	□□□□□ -0.19
HDLBP-230	ENST00000462130	EVX2	Q03828	476 aa		13.84	□□□□□ -0.19
HDLBP-230	ENST00000462130	SSFA2	P28290	1259 aa		13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	ATP6V1A	P38606	617 aa		13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	EIF4A2	Q14240	407 aa	Known RBP	13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	SMIM5	Q71RC9	77 aa		13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	ASAP1	Q9ULH1	1129 aa		13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	CLEC11A	Q9Y240	323 aa		13.83	□□□□□ -0.2
HDLBP-230	ENST00000462130	GNPAT	O15228	680 aa		13.82	□□□□□ -0.2
HDLBP-230	ENST00000462130	AMIGO3	Q86WK7	504 aa		13.82	□□□□□ -0.2
HDLBP-230	ENST00000462130	LINC00116	Q8NCU8	138 aa		13.82	□□□□□ -0.2
HDLBP-230	ENST00000462130	ITPK1	Q13572	414 aa		13.8	□□□□□ -0.2
HDLBP-230	ENST00000462130	ATG3	Q9NT62	314 aa		13.8	□□□□□ -0.2
HDLBP-230	ENST00000462130	WWC3	Q9ULE0	1092 aa		13.8	□□□□□ -0.2
HDLBP-230	ENST00000462130	SSUH2	Q9Y2M2	353 aa		13.8	□□□□□ -0.2
HDLBP-230	ENST00000462130	HSP90AB1	P08238	724 aa	Known RBP	13.79	□□□□□ -0.2
HDLBP-230	ENST00000462130	PRKAR2A	P13861	404 aa	Known RBP	13.79	□□□□□ -0.2
HDLBP-230	ENST00000462130	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.79	□□□□□ -0.2
HDLBP-230	ENST00000462130	PANK3	Q9H999	370 aa		13.79	□□□□□ -0.2
HDLBP-230	ENST00000462130	IGSF1	Q8N6C5	1336 aa		13.79	□□□□□ -0.2
HDLBP-230	ENST00000462130	ERVV-2	B6SEH9	535 aa		13.78	□□□□□ -0.2
HDLBP-230	ENST00000462130	PLEKHG2	Q9H7P9	1386 aa		13.78	□□□□□ -0.2
HDLBP-230	ENST00000462130	ATP10D	Q9P241	1426 aa		13.78	□□□□□ -0.2
HDLBP-230	ENST00000462130	ZEB1	P37275	1124 aa	Predicted RBP	13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	ZNF831	Q5JPB2	1677 aa		13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	TRAPPC3L	Q5T215	181 aa		13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	MORC1	Q86VD1	984 aa		13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	DCAF5	Q96JK2	942 aa		13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	RTCB	Q9Y3I0	505 aa	Known RBP	13.77	□□□□□ -0.21
HDLBP-230	ENST00000462130	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.76	□□□□□ -0.21
HDLBP-230	ENST00000462130	COL5A3	P25940	1745 aa	Predicted RBP	13.76	□□□□□ -0.21
HDLBP-230	ENST00000462130	CABP4	P57796	275 aa		13.76	□□□□□ -0.21
HDLBP-230	ENST00000462130	AMOT	Q4VCS5	1084 aa		13.76	□□□□□ -0.21
HDLBP-230	ENST00000462130	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.76	□□□□□ -0.21
HDLBP-230	ENST00000462130	MMP10	P09238	476 aa		13.75	□□□□□ -0.21
HDLBP-230	ENST00000462130	C1orf141	Q5JVX7	400 aa		13.75	□□□□□ -0.21
HDLBP-230	ENST00000462130	ZNF526	Q8TF50	670 aa	Predicted RBP	13.75	□□□□□ -0.21
HDLBP-230	ENST00000462130	KIF13B	Q9NQT8	1826 aa		13.75	□□□□□ -0.21
HDLBP-230	ENST00000462130	MYH14	Q7Z406	1995 aa	Known RBP	13.74	□□□□□ -0.21
HDLBP-230	ENST00000462130	KDR	P35968	1356 aa		13.74	□□□□□ -0.21
HDLBP-230	ENST00000462130	MTHFS	P49914	203 aa		13.74	□□□□□ -0.21
HDLBP-230	ENST00000462130	NLGN1	Q8N2Q7	840 aa		13.74	□□□□□ -0.21
HDLBP-230	ENST00000462130	RFC4	P35249	363 aa		13.73	□□□□□ -0.21
HDLBP-230	ENST00000462130	RC3H1	Q5TC82	1133 aa	Known RBP	13.73	□□□□□ -0.21
HDLBP-230	ENST00000462130	SLC4A9	Q96Q91	983 aa		13.73	□□□□□ -0.21
HDLBP-230	ENST00000462130	KNSTRN	Q9Y448	316 aa		13.73	□□□□□ -0.21
HDLBP-230	ENST00000462130	VIRMA	Q69YN4	1812 aa	Known RBP	13.73	□□□□□ -0.21
HDLBP-230	ENST00000462130	SCN11A	Q9UI33	1791 aa		13.73	□□□□□ -0.21
HDLBP-230	ENST00000462130	CIC	Q96RK0	1608 aa	Predicted RBP	13.72	□□□□□ -0.21
HDLBP-230	ENST00000462130	SULT6B1	Q6IMI4	303 aa		13.72	□□□□□ -0.21
HDLBP-230	ENST00000462130	AEBP1	Q8IUX7	1158 aa		13.72	□□□□□ -0.21
HDLBP-230	ENST00000462130	ARHGEF1	Q92888	912 aa	Known RBP	13.72	□□□□□ -0.21
HDLBP-230	ENST00000462130	C4A	P0C0L4	1744 aa		13.72	□□□□□ -0.21
HDLBP-230	ENST00000462130	KDM6A	O15550	1401 aa	Predicted RBP	13.72	□□□□□ -0.21
HDLBP-230	ENST00000462130	ADCY9	O60503	1353 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	CNTNAP4	Q9C0A0	1308 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	PTCD1	O75127	700 aa	Known RBP	13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	RPS6KA4	O75676	772 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	TGFB2	P61812	414 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	NFATC2IP	Q8NCF5	419 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	CCDC87	Q9NVE4	849 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	PARP3	Q9Y6F1	533 aa		13.71	□□□□□ -0.21
HDLBP-230	ENST00000462130	KIAA1551	Q9HCM1	1747 aa		13.7	□□□□□ -0.22
HDLBP-230	ENST00000462130	BCS1L	Q9Y276	419 aa		13.7	□□□□□ -0.22
HDLBP-230	ENST00000462130	PXDNL	A1KZ92	1463 aa		13.69	□□□□□ -0.22
HDLBP-230	ENST00000462130		A0A0G2JLW4	131 aa		13.69	□□□□□ -0.22
HDLBP-230	ENST00000462130	GYS1	P13807	737 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms