RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 EIF4A1P60842 406 aaKnown RBP17.01■□□□□ 0.31
CLK3-203ENST00000454830 SLC39A6Q13433 755 aa17.01■□□□□ 0.31
CLK3-203ENST00000454830 BECN1Q14457 450 aa17.01■□□□□ 0.31
CLK3-203ENST00000454830 STRN4Q9NRL3 753 aa17■□□□□ 0.31
CLK3-203ENST00000454830 AIMP1Q12904 312 aaKnown RBP17■□□□□ 0.31
CLK3-203ENST00000454830 BRINP3Q76B58 766 aa17■□□□□ 0.31
CLK3-203ENST00000454830 C16orf71Q8IYS4 520 aaPredicted RBP17■□□□□ 0.31
CLK3-203ENST00000454830 SPRYD3Q8NCJ5 442 aa17■□□□□ 0.31
CLK3-203ENST00000454830 SLAIN2Q9P270 581 aa17■□□□□ 0.31
CLK3-203ENST00000454830 USP35Q9P2H5 1018 aa17■□□□□ 0.31
CLK3-203ENST00000454830 NWD1Q149M9 1564 aa17■□□□□ 0.31
CLK3-203ENST00000454830 TOM1L2Q6ZVM7 507 aa17■□□□□ 0.31
CLK3-203ENST00000454830 SPG7Q9UQ90 795 aa16.99■□□□□ 0.31
CLK3-203ENST00000454830 EXOC6BQ9Y2D4 811 aa16.99■□□□□ 0.31
CLK3-203ENST00000454830 GNAI3P08754 354 aa16.99■□□□□ 0.31
CLK3-203ENST00000454830 UBTFL1P0CB47 393 aaPredicted RBP16.98■□□□□ 0.31
CLK3-203ENST00000454830 C22orf23Q9BZE7 217 aa16.98■□□□□ 0.31
CLK3-203ENST00000454830 BABAM1Q9NWV8 329 aa16.98■□□□□ 0.31
CLK3-203ENST00000454830 MARF1Q9Y4F3 1742 aaKnown RBP16.98■□□□□ 0.31
CLK3-203ENST00000454830 SLKQ9H2G2 1235 aaPredicted RBP16.98■□□□□ 0.31
CLK3-203ENST00000454830 DCTPP1Q9H773 170 aa16.98■□□□□ 0.31
CLK3-203ENST00000454830 PI4KAP2A4QPH2 592 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 PI4KAP1Q8N8J0 262 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 LRRFIP2Q9Y608 721 aaKnown RBP16.97■□□□□ 0.31
CLK3-203ENST00000454830 EVA1CP58658 441 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 SPATA31A3Q5VYP0 1347 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 PRAMEF22A3QJZ6 481 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 MYT1Q01538 1121 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 CHMP4AQ9BY43 222 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 SRCIN1Q9C0H9 1055 aa16.97■□□□□ 0.31
CLK3-203ENST00000454830 NFATC2IPQ8NCF5 419 aa16.96■□□□□ 0.31
CLK3-203ENST00000454830 RGS12O14924 1447 aa16.96■□□□□ 0.31
CLK3-203ENST00000454830 OTUD7AQ8TE49 926 aaPredicted RBP16.96■□□□□ 0.3
CLK3-203ENST00000454830 TTC5Q8N0Z6 440 aa16.95■□□□□ 0.3
CLK3-203ENST00000454830 PXDNQ92626 1479 aa16.94■□□□□ 0.3
CLK3-203ENST00000454830 MYL6BP14649 208 aa16.94■□□□□ 0.3
CLK3-203ENST00000454830 RGPD2P0DJD1 1756 aa16.94■□□□□ 0.3
CLK3-203ENST00000454830 CEMIPQ8WUJ3 1361 aa16.94■□□□□ 0.3
CLK3-203ENST00000454830 IFNL2Q8IZJ0 200 aa16.94■□□□□ 0.3
CLK3-203ENST00000454830 TNS3Q68CZ2 1445 aa16.94■□□□□ 0.3
CLK3-203ENST00000454830 DNAAF4Q8WXU2 420 aa16.93■□□□□ 0.3
CLK3-203ENST00000454830 TBC1D32Q96NH3 1257 aa16.93■□□□□ 0.3
CLK3-203ENST00000454830 DBF4Q9UBU7 674 aaPredicted RBP16.93■□□□□ 0.3
CLK3-203ENST00000454830 BMP2KLQ5H9B9 411 aa16.93■□□□□ 0.3
CLK3-203ENST00000454830 DDX54Q8TDD1 881 aaKnown RBP16.93■□□□□ 0.3
CLK3-203ENST00000454830 C9orf78Q9NZ63 289 aaPredicted RBP16.93■□□□□ 0.3
CLK3-203ENST00000454830 OS9Q13438 667 aaPredicted RBP16.92■□□□□ 0.3
CLK3-203ENST00000454830 PIP4K2AP48426 406 aaPredicted RBP16.92■□□□□ 0.3
CLK3-203ENST00000454830 CABP4P57796 275 aa16.92■□□□□ 0.3
CLK3-203ENST00000454830 PROSER3Q2NL68 480 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 PLEKHM2Q8IWE5 1019 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 PNMA6EA0A0J9YXQ4 647 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 GIGYF1O75420 1035 aaPredicted RBP16.91■□□□□ 0.3
CLK3-203ENST00000454830 SOS1Q07889 1333 aaPredicted RBP16.91■□□□□ 0.3
CLK3-203ENST00000454830 KIF1AQ12756 1690 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 SLIT3O75094 1523 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 DCCP43146 1447 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 PHKG2P15735 406 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 TSHZ3Q63HK5 1081 aa16.91■□□□□ 0.3
CLK3-203ENST00000454830 A0A0G2JS52 829 aa16.9■□□□□ 0.3
CLK3-203ENST00000454830 MAP3K2Q9Y2U5 619 aa16.9■□□□□ 0.3
CLK3-203ENST00000454830 USP44Q9H0E7 712 aa16.9■□□□□ 0.3
CLK3-203ENST00000454830 SURF6O75683 361 aaKnown RBP16.9■□□□□ 0.3
CLK3-203ENST00000454830 ZNF790Q6PG37 636 aa16.9■□□□□ 0.3
CLK3-203ENST00000454830 TBC1D9Q6ZT07 1266 aa16.9■□□□□ 0.3
CLK3-203ENST00000454830 RIC3Q7Z5B4 369 aa16.89■□□□□ 0.3
CLK3-203ENST00000454830 IL1RAPL2Q9NP60 686 aa16.89■□□□□ 0.3
CLK3-203ENST00000454830 CDC45O75419 566 aa16.89■□□□□ 0.29
CLK3-203ENST00000454830 SLC52A2Q9HAB3 445 aa16.89■□□□□ 0.29
CLK3-203ENST00000454830 ATP10DQ9P241 1426 aa16.89■□□□□ 0.29
CLK3-203ENST00000454830 SRGAP3O43295 1099 aa16.89■□□□□ 0.29
CLK3-203ENST00000454830 STRCP1A6NGW2 1772 aa16.89■□□□□ 0.29
CLK3-203ENST00000454830 HOXB7P09629 217 aa16.88■□□□□ 0.29
CLK3-203ENST00000454830 NBPF7P0C2Y1 421 aaPredicted RBP16.88■□□□□ 0.29
CLK3-203ENST00000454830 LRRCC1Q9C099 1032 aa16.88■□□□□ 0.29
CLK3-203ENST00000454830 TRIM6-TRIM34B2RNG4 842 aa16.88■□□□□ 0.29
CLK3-203ENST00000454830 CASC1Q6TDU7 716 aa16.88■□□□□ 0.29
CLK3-203ENST00000454830 MED1Q15648 1581 aaPredicted RBP16.88■□□□□ 0.29
CLK3-203ENST00000454830 DDX58O95786 925 aaKnown RBP16.87■□□□□ 0.29
CLK3-203ENST00000454830 PPP1R42Q7Z4L9 355 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 NCOA3Q9Y6Q9 1424 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 CYP27B1O15528 508 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 ATP8B2P98198 1209 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 CWF19L2Q2TBE0 894 aaKnown RBP16.87■□□□□ 0.29
CLK3-203ENST00000454830 ARXQ96QS3 562 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 ZNF330Q9Y3S2 320 aaPredicted RBP16.87■□□□□ 0.29
CLK3-203ENST00000454830 USP54Q70EL1 1684 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 TTC22Q5TAA0 569 aa16.87■□□□□ 0.29
CLK3-203ENST00000454830 ZNF496Q96IT1 587 aaPredicted RBP16.87■□□□□ 0.29
CLK3-203ENST00000454830 HSP90AA1P07900 732 aaKnown RBP16.86■□□□□ 0.29
CLK3-203ENST00000454830 GSPT1P15170 499 aaKnown RBP16.86■□□□□ 0.29
CLK3-203ENST00000454830 HSCBQ8IWL3 235 aa16.86■□□□□ 0.29
CLK3-203ENST00000454830 RILPL2Q969X0 211 aa16.86■□□□□ 0.29
CLK3-203ENST00000454830 DCAF5Q96JK2 942 aa16.86■□□□□ 0.29
CLK3-203ENST00000454830 RGPD5Q99666 1765 aa16.86■□□□□ 0.29
CLK3-203ENST00000454830 ZCRB1Q8TBF4 217 aaKnown RBP16.85■□□□□ 0.29
CLK3-203ENST00000454830 TRPM3Q9HCF6 1732 aaPredicted RBP16.85■□□□□ 0.29
CLK3-203ENST00000454830 LMTK3Q96Q04 1460 aa16.85■□□□□ 0.29
CLK3-203ENST00000454830 PTCD1O75127 700 aaKnown RBP16.85■□□□□ 0.29
CLK3-203ENST00000454830 TBC1D2Q9BYX2 928 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms