RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 MAP3K5Q99683 1374 aa29.24■■■□□ 2.27
C9orf3-208ENST00000451893 GPR162Q16538 588 aa29.23■■■□□ 2.27
C9orf3-208ENST00000451893 RBM42Q9BTD8 480 aaKnown RBP29.23■■■□□ 2.27
C9orf3-208ENST00000451893 IL13P35225 146 aa29.22■■■□□ 2.27
C9orf3-208ENST00000451893 COL24A1Q17RW2 1714 aa29.22■■■□□ 2.27
C9orf3-208ENST00000451893 ATG3Q9NT62 314 aa29.2■■■□□ 2.26
C9orf3-208ENST00000451893 UBR3Q6ZT12 1888 aa29.19■■■□□ 2.26
C9orf3-208ENST00000451893 GNPATO15228 680 aa29.19■■■□□ 2.26
C9orf3-208ENST00000451893 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.18■■■□□ 2.26
C9orf3-208ENST00000451893 DIAPH1O60610 1272 aaKnown RBP29.18■■■□□ 2.26
C9orf3-208ENST00000451893 LINC00116Q8NCU8 138 aa29.18■■■□□ 2.26
C9orf3-208ENST00000451893 PER1O15534 1290 aaPredicted RBP29.17■■■□□ 2.26
C9orf3-208ENST00000451893 HMOX1P09601 288 aa29.17■■■□□ 2.26
C9orf3-208ENST00000451893 SSFA2P28290 1259 aa29.17■■■□□ 2.26
C9orf3-208ENST00000451893 KDRP35968 1356 aa29.15■■■□□ 2.26
C9orf3-208ENST00000451893 KDM6AO15550 1401 aaPredicted RBP29.15■■■□□ 2.26
C9orf3-208ENST00000451893 CHD4Q14839 1912 aa29.15■■■□□ 2.26
C9orf3-208ENST00000451893 ITPK1Q13572 414 aa29.14■■■□□ 2.26
C9orf3-208ENST00000451893 AKAP4Q5JQC9 854 aa29.12■■■□□ 2.25
C9orf3-208ENST00000451893 U2SURPO15042 1029 aaKnown RBP29.11■■■□□ 2.25
C9orf3-208ENST00000451893 SMIM5Q71RC9 77 aa29.11■■■□□ 2.25
C9orf3-208ENST00000451893 NLGN2Q8NFZ4 835 aa29.11■■■□□ 2.25
C9orf3-208ENST00000451893 RTCBQ9Y3I0 505 aaKnown RBP29.11■■■□□ 2.25
C9orf3-208ENST00000451893 NPC1L1Q9UHC9 1359 aa29.11■■■□□ 2.25
C9orf3-208ENST00000451893 PTCD1O75127 700 aaKnown RBP29.1■■■□□ 2.25
C9orf3-208ENST00000451893 NFATC2IPQ8NCF5 419 aa29.1■■■□□ 2.25
C9orf3-208ENST00000451893 SCN11AQ9UI33 1791 aa29.1■■■□□ 2.25
C9orf3-208ENST00000451893 CFAP53Q96M91 514 aa29.08■■■□□ 2.25
C9orf3-208ENST00000451893 TRAPPC3LQ5T215 181 aa29.07■■■□□ 2.24
C9orf3-208ENST00000451893 AMIGO3Q86WK7 504 aa29.07■■■□□ 2.24
C9orf3-208ENST00000451893 VIRMAQ69YN4 1812 aaKnown RBP29.06■■■□□ 2.24
C9orf3-208ENST00000451893 ZNF831Q5JPB2 1677 aa29.06■■■□□ 2.24
C9orf3-208ENST00000451893 CD2APQ9Y5K6 639 aa29.04■■■□□ 2.24
C9orf3-208ENST00000451893 COL5A3P25940 1745 aaPredicted RBP29.03■■■□□ 2.24
C9orf3-208ENST00000451893 CNTNAP4Q9C0A0 1308 aa29.02■■■□□ 2.24
C9orf3-208ENST00000451893 RFC4P35249 363 aa29.02■■■□□ 2.24
C9orf3-208ENST00000451893 GRIN3BO60391 1043 aa29.01■■■□□ 2.23
C9orf3-208ENST00000451893 RC3H1Q5TC82 1133 aaKnown RBP29.01■■■□□ 2.23
C9orf3-208ENST00000451893 SLC4A9Q96Q91 983 aa29.01■■■□□ 2.23
C9orf3-208ENST00000451893 SLC52A2Q9HAB3 445 aa29.01■■■□□ 2.23
C9orf3-208ENST00000451893 RNMTO43148 476 aaKnown RBP29■■■□□ 2.23
C9orf3-208ENST00000451893 ADRA2BP18089 450 aa29■■■□□ 2.23
C9orf3-208ENST00000451893 MTHFSDQ2M296 383 aaKnown RBP29■■■□□ 2.23
C9orf3-208ENST00000451893 LGR6Q9HBX8 967 aa28.99■■■□□ 2.23
C9orf3-208ENST00000451893 NUDCQ9Y266 331 aa28.99■■■□□ 2.23
C9orf3-208ENST00000451893 RPS6KA4O75676 772 aa28.97■■■□□ 2.23
C9orf3-208ENST00000451893 GAS2L2Q8NHY3 880 aa28.97■■■□□ 2.23
C9orf3-208ENST00000451893 MMP10P09238 476 aa28.96■■■□□ 2.23
C9orf3-208ENST00000451893 CRKLP46109 303 aaKnown RBP28.96■■■□□ 2.23
C9orf3-208ENST00000451893 NLGN1Q8N2Q7 840 aa28.96■■■□□ 2.23
C9orf3-208ENST00000451893 ARHGEF1Q92888 912 aaKnown RBP28.96■■■□□ 2.23
C9orf3-208ENST00000451893 ZNF784Q8NCA9 323 aaPredicted RBP28.95■■■□□ 2.22
C9orf3-208ENST00000451893 COL3A1P02461 1466 aaPredicted RBP28.95■■■□□ 2.22
C9orf3-208ENST00000451893 DIEXFQ68CQ4 756 aaKnown RBP28.94■■■□□ 2.22
C9orf3-208ENST00000451893 TTC5Q8N0Z6 440 aa28.94■■■□□ 2.22
C9orf3-208ENST00000451893 MYH14Q7Z406 1995 aaKnown RBP28.93■■■□□ 2.22
C9orf3-208ENST00000451893 TEFQ10587 303 aa28.93■■■□□ 2.22
C9orf3-208ENST00000451893 TJP1Q07157 1748 aa28.93■■■□□ 2.22
C9orf3-208ENST00000451893 YBX3P16989 372 aaKnown RBP eCLIP28.92■■■□□ 2.22
C9orf3-208ENST00000451893 SLC39A6Q13433 755 aa28.92■■■□□ 2.22
C9orf3-208ENST00000451893 WWC3Q9ULE0 1092 aa28.92■■■□□ 2.22
C9orf3-208ENST00000451893 MRC1P22897 1456 aa28.91■■■□□ 2.22
C9orf3-208ENST00000451893 GNAT3A8MTJ3 354 aa28.91■■■□□ 2.22
C9orf3-208ENST00000451893 PARP3Q9Y6F1 533 aa28.91■■■□□ 2.22
C9orf3-208ENST00000451893 C4AP0C0L4 1744 aa28.91■■■□□ 2.22
C9orf3-208ENST00000451893 DNAJC10Q8IXB1 793 aa28.89■■■□□ 2.22
C9orf3-208ENST00000451893 CCDC87Q9NVE4 849 aa28.89■■■□□ 2.22
C9orf3-208ENST00000451893 CICQ96RK0 1608 aaPredicted RBP28.89■■■□□ 2.22
C9orf3-208ENST00000451893 U2AF1L5P0DN76 240 aaPredicted RBP28.88■■■□□ 2.21
C9orf3-208ENST00000451893 PRKAR2BP31323 418 aa28.88■■■□□ 2.21
C9orf3-208ENST00000451893 U2AF1Q01081 240 aaKnown RBP eCLIP28.88■■■□□ 2.21
C9orf3-208ENST00000451893 GYS1P13807 737 aa28.87■■■□□ 2.21
C9orf3-208ENST00000451893 PPP2R1AP30153 589 aa28.87■■■□□ 2.21
C9orf3-208ENST00000451893 ZPR1O75312 459 aa28.86■■■□□ 2.21
C9orf3-208ENST00000451893 UTRNP46939 3433 aa28.85■■■□□ 2.21
C9orf3-208ENST00000451893 ADAMTS7Q9UKP4 1686 aa28.84■■■□□ 2.21
C9orf3-208ENST00000451893 NEFMP07197 916 aa28.84■■■□□ 2.21
C9orf3-208ENST00000451893 SRP68Q9UHB9 627 aaKnown RBP28.83■■■□□ 2.21
C9orf3-208ENST00000451893 RTF1Q92541 710 aaKnown RBP28.82■■■□□ 2.2
C9orf3-208ENST00000451893 KCPQ6ZWJ8 1503 aa28.81■■■□□ 2.2
C9orf3-208ENST00000451893 USP42Q9H9J4 1324 aaKnown RBP28.81■■■□□ 2.2
C9orf3-208ENST00000451893 INTS5Q6P9B9 1019 aaKnown RBP28.81■■■□□ 2.2
C9orf3-208ENST00000451893 VSIG10Q8N0Z9 540 aa28.81■■■□□ 2.2
C9orf3-208ENST00000451893 RSPH6AQ9H0K4 717 aa28.81■■■□□ 2.2
C9orf3-208ENST00000451893 STARD3NLO95772 234 aa28.8■■■□□ 2.2
C9orf3-208ENST00000451893 CYP19A1P11511 503 aaPredicted RBP28.8■■■□□ 2.2
C9orf3-208ENST00000451893 N4BP2Q86UW6 1770 aaPredicted RBP28.8■■■□□ 2.2
C9orf3-208ENST00000451893 TGFB2P61812 414 aa28.79■■■□□ 2.2
C9orf3-208ENST00000451893 NPM2Q86SE8 214 aaKnown RBP28.79■■■□□ 2.2
C9orf3-208ENST00000451893 KIF13BQ9NQT8 1826 aa28.78■■■□□ 2.2
C9orf3-208ENST00000451893 UBR2Q8IWV8 1755 aa28.78■■■□□ 2.2
C9orf3-208ENST00000451893 IL17REQ8NFR9 667 aa28.78■■■□□ 2.2
C9orf3-208ENST00000451893 COL15A1P39059 1388 aa28.77■■■□□ 2.2
C9orf3-208ENST00000451893 SOS1Q07889 1333 aaPredicted RBP28.77■■■□□ 2.2
C9orf3-208ENST00000451893 CANXP27824 592 aaKnown RBP28.77■■■□□ 2.2
C9orf3-208ENST00000451893 FKBP8Q14318 412 aa28.77■■■□□ 2.2
C9orf3-208ENST00000451893 USPL1Q5W0Q7 1092 aa28.77■■■□□ 2.2
C9orf3-208ENST00000451893 PHACTR3Q96KR7 559 aa28.77■■■□□ 2.2
C9orf3-208ENST00000451893 C10orf71Q711Q0 1435 aa28.77■■■□□ 2.2
C9orf3-208ENST00000451893 FCHSD2O94868 740 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms