RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 ITPK1Q13572 414 aa26.21■■□□□ 1.79
USP40-207ENST00000450940 HMOX1P09601 288 aa26.2■■□□□ 1.78
USP40-207ENST00000450940 CABP4P57796 275 aa26.2■■□□□ 1.78
USP40-207ENST00000450940 LINC00116Q8NCU8 138 aa26.2■■□□□ 1.78
USP40-207ENST00000450940 ATP6V1AP38606 617 aa26.19■■□□□ 1.78
USP40-207ENST00000450940 AKAP4Q5JQC9 854 aa26.19■■□□□ 1.78
USP40-207ENST00000450940 AK7Q96M32 723 aa26.19■■□□□ 1.78
USP40-207ENST00000450940 DCAF8L1A6NGE4 600 aa26.18■■□□□ 1.78
USP40-207ENST00000450940 MSH5O43196 834 aa26.18■■□□□ 1.78
USP40-207ENST00000450940 AMIGO3Q86WK7 504 aa26.18■■□□□ 1.78
USP40-207ENST00000450940 SLC4A9Q96Q91 983 aa26.18■■□□□ 1.78
USP40-207ENST00000450940 VIRMAQ69YN4 1812 aaKnown RBP26.18■■□□□ 1.78
USP40-207ENST00000450940 CNGB1Q14028 1251 aaPredicted RBP26.17■■□□□ 1.78
USP40-207ENST00000450940 SSFA2P28290 1259 aa26.16■■□□□ 1.78
USP40-207ENST00000450940 NFATC2IPQ8NCF5 419 aa26.16■■□□□ 1.78
USP40-207ENST00000450940 COL5A3P25940 1745 aaPredicted RBP26.16■■□□□ 1.78
USP40-207ENST00000450940 ADAMTS7Q9UKP4 1686 aa26.15■■□□□ 1.78
USP40-207ENST00000450940 MTHFSDQ2M296 383 aaKnown RBP26.14■■□□□ 1.78
USP40-207ENST00000450940 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.13■■□□□ 1.77
USP40-207ENST00000450940 RBM42Q9BTD8 480 aaKnown RBP26.12■■□□□ 1.77
USP40-207ENST00000450940 LGR6Q9HBX8 967 aa26.12■■□□□ 1.77
USP40-207ENST00000450940 CICQ96RK0 1608 aaPredicted RBP26.12■■□□□ 1.77
USP40-207ENST00000450940 MRC1P22897 1456 aa26.11■■□□□ 1.77
USP40-207ENST00000450940 PPP2R1AP30153 589 aa26.11■■□□□ 1.77
USP40-207ENST00000450940 RC3H1Q5TC82 1133 aaKnown RBP26.11■■□□□ 1.77
USP40-207ENST00000450940 RNMTO43148 476 aaKnown RBP26.1■■□□□ 1.77
USP40-207ENST00000450940 MSL1Q68DK7 614 aa26.1■■□□□ 1.77
USP40-207ENST00000450940 SMIM5Q71RC9 77 aa26.1■■□□□ 1.77
USP40-207ENST00000450940 CFAP53Q96M91 514 aa26.1■■□□□ 1.77
USP40-207ENST00000450940 SLC52A2Q9HAB3 445 aa26.1■■□□□ 1.77
USP40-207ENST00000450940 MYH14Q7Z406 1995 aaKnown RBP26.09■■□□□ 1.77
USP40-207ENST00000450940 U2SURPO15042 1029 aaKnown RBP26.09■■□□□ 1.77
USP40-207ENST00000450940 GNPATO15228 680 aa26.09■■□□□ 1.77
USP40-207ENST00000450940 CNTNAP4Q9C0A0 1308 aa26.09■■□□□ 1.77
USP40-207ENST00000450940 PHF14O94880 888 aa26.08■■□□□ 1.77
USP40-207ENST00000450940 TJP1Q07157 1748 aa26.06■■□□□ 1.76
USP40-207ENST00000450940 PTCD1O75127 700 aaKnown RBP26.06■■□□□ 1.76
USP40-207ENST00000450940 RTCBQ9Y3I0 505 aaKnown RBP26.05■■□□□ 1.76
USP40-207ENST00000450940 RPS6KA4O75676 772 aa26.04■■□□□ 1.76
USP40-207ENST00000450940 ADRA2BP18089 450 aa26.03■■□□□ 1.76
USP40-207ENST00000450940 GAS2L2Q8NHY3 880 aa26.03■■□□□ 1.76
USP40-207ENST00000450940 RSPH6AQ9H0K4 717 aa26.03■■□□□ 1.76
USP40-207ENST00000450940 NUDCQ9Y266 331 aa26.03■■□□□ 1.76
USP40-207ENST00000450940 YY1P25490 414 aa26.02■■□□□ 1.76
USP40-207ENST00000450940 TRAPPC3LQ5T215 181 aa26.02■■□□□ 1.76
USP40-207ENST00000450940 KLHL34Q8N239 644 aa26.02■■□□□ 1.76
USP40-207ENST00000450940 NLGN2Q8NFZ4 835 aa26.02■■□□□ 1.76
USP40-207ENST00000450940 CD2APQ9Y5K6 639 aa26.02■■□□□ 1.76
USP40-207ENST00000450940 CHD4Q14839 1912 aa26.02■■□□□ 1.76
USP40-207ENST00000450940 ARHGEF1Q92888 912 aaKnown RBP26■■□□□ 1.75
USP40-207ENST00000450940 SIPA1L3O60292 1781 aaPredicted RBP26■■□□□ 1.75
USP40-207ENST00000450940 UBR2Q8IWV8 1755 aa26■■□□□ 1.75
USP40-207ENST00000450940 KCPQ6ZWJ8 1503 aa25.99■■□□□ 1.75
USP40-207ENST00000450940 GNAT3A8MTJ3 354 aa25.99■■□□□ 1.75
USP40-207ENST00000450940 PRKAR2BP31323 418 aa25.99■■□□□ 1.75
USP40-207ENST00000450940 CRKLP46109 303 aaKnown RBP25.99■■□□□ 1.75
USP40-207ENST00000450940 IL17REQ8NFR9 667 aa25.99■■□□□ 1.75
USP40-207ENST00000450940 PHACTR3Q96KR7 559 aa25.99■■□□□ 1.75
USP40-207ENST00000450940 C4AP0C0L4 1744 aa25.98■■□□□ 1.75
USP40-207ENST00000450940 FCHSD2O94868 740 aa25.97■■□□□ 1.75
USP40-207ENST00000450940 SLC39A6Q13433 755 aa25.97■■□□□ 1.75
USP40-207ENST00000450940 GPR162Q16538 588 aa25.96■■□□□ 1.75
USP40-207ENST00000450940 VSIG10Q8N0Z9 540 aa25.96■■□□□ 1.75
USP40-207ENST00000450940 NLGN1Q8N2Q7 840 aa25.96■■□□□ 1.75
USP40-207ENST00000450940 CEMIPQ8WUJ3 1361 aa25.95■■□□□ 1.75
USP40-207ENST00000450940 U2AF1L5P0DN76 240 aaPredicted RBP25.95■■□□□ 1.74
USP40-207ENST00000450940 U2AF1Q01081 240 aaKnown RBP eCLIP25.95■■□□□ 1.74
USP40-207ENST00000450940 INTS5Q6P9B9 1019 aaKnown RBP25.95■■□□□ 1.74
USP40-207ENST00000450940 UTRNP46939 3433 aa25.94■■□□□ 1.74
USP40-207ENST00000450940 DNAJC10Q8IXB1 793 aa25.94■■□□□ 1.74
USP40-207ENST00000450940 GYS1P13807 737 aa25.93■■□□□ 1.74
USP40-207ENST00000450940 RFC4P35249 363 aa25.93■■□□□ 1.74
USP40-207ENST00000450940 MMP10P09238 476 aa25.92■■□□□ 1.74
USP40-207ENST00000450940 CYP19A1P11511 503 aaPredicted RBP25.92■■□□□ 1.74
USP40-207ENST00000450940 TEFQ10587 303 aa25.92■■□□□ 1.74
USP40-207ENST00000450940 KIF13BQ9NQT8 1826 aa25.92■■□□□ 1.74
USP40-207ENST00000450940 CCDC87Q9NVE4 849 aa25.91■■□□□ 1.74
USP40-207ENST00000450940 GOLGB1Q14789 3259 aaKnown RBP25.89■■□□□ 1.73
USP40-207ENST00000450940 YBX3P16989 372 aaKnown RBP eCLIP25.88■■□□□ 1.73
USP40-207ENST00000450940 ZNF790Q6PG37 636 aa25.88■■□□□ 1.73
USP40-207ENST00000450940 TTC5Q8N0Z6 440 aa25.88■■□□□ 1.73
USP40-207ENST00000450940 SOS1Q07889 1333 aaPredicted RBP25.88■■□□□ 1.73
USP40-207ENST00000450940 USP42Q9H9J4 1324 aaKnown RBP25.88■■□□□ 1.73
USP40-207ENST00000450940 GRIN3BO60391 1043 aa25.86■■□□□ 1.73
USP40-207ENST00000450940 PELP1Q8IZL8 1130 aaKnown RBP25.86■■□□□ 1.73
USP40-207ENST00000450940 ZNF496Q96IT1 587 aaPredicted RBP25.86■■□□□ 1.73
USP40-207ENST00000450940 HTATSF1O43719 755 aaKnown RBP25.85■■□□□ 1.73
USP40-207ENST00000450940 RALBP1Q15311 655 aa25.85■■□□□ 1.73
USP40-207ENST00000450940 SRP68Q9UHB9 627 aaKnown RBP25.85■■□□□ 1.73
USP40-207ENST00000450940 KIAA1551Q9HCM1 1747 aa25.85■■□□□ 1.73
USP40-207ENST00000450940 HEG1Q9ULI3 1381 aa25.84■■□□□ 1.73
USP40-207ENST00000450940 DDX10Q13206 875 aaKnown RBP25.83■■□□□ 1.73
USP40-207ENST00000450940 TEX13AQ9BXU3 409 aaPredicted RBP25.83■■□□□ 1.73
USP40-207ENST00000450940 ZBTB1Q9Y2K1 713 aa25.83■■□□□ 1.73
USP40-207ENST00000450940 C10orf71Q711Q0 1435 aa25.82■■□□□ 1.72
USP40-207ENST00000450940 FKBP8Q14318 412 aa25.82■■□□□ 1.72
USP40-207ENST00000450940 DLG5Q8TDM6 1919 aa25.82■■□□□ 1.72
USP40-207ENST00000450940 STARD3NLO95772 234 aa25.81■■□□□ 1.72
USP40-207ENST00000450940 RTF1Q92541 710 aaKnown RBP25.81■■□□□ 1.72
USP40-207ENST00000450940 PLEKHF1Q96S99 279 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms