RNA–Protein interactions for RNA: ENST00000449339.1

AP000253.1-201, humanhuman

TSL 3 BASIC

Gene AP000253.1, Length 2,233 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP000253.1-201ENST00000449339 PTPRCP08575 1304 aa20.25■□□□□ 0.83
AP000253.1-201ENST00000449339 NHSL1Q5SYE7 1610 aa20.25■□□□□ 0.83
AP000253.1-201ENST00000449339 PRDM11Q9NQV5 511 aa20.25■□□□□ 0.83
AP000253.1-201ENST00000449339 SEC24BO95487 1268 aa20.24■□□□□ 0.83
AP000253.1-201ENST00000449339 INTS3Q68E01 1043 aaKnown RBP20.24■□□□□ 0.83
AP000253.1-201ENST00000449339 ABCA3Q99758 1704 aa20.24■□□□□ 0.83
AP000253.1-201ENST00000449339 BTBD11A6QL63 1104 aa20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 F6X3S4 739 aa20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 EIF4A1P60842 406 aaKnown RBP20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 NUCB1Q02818 461 aa20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 STK31Q9BXU1 1019 aa20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 ABCC6O95255 1503 aa20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 TATP17735 454 aaPredicted RBP20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 CCDC30Q5VVM6 783 aa20.23■□□□□ 0.83
AP000253.1-201ENST00000449339 SIRT2Q8IXJ6 389 aa20.21■□□□□ 0.83
AP000253.1-201ENST00000449339 GCC1Q96CN9 775 aa20.21■□□□□ 0.83
AP000253.1-201ENST00000449339 EIF2S2P20042 333 aaKnown RBP20.2■□□□□ 0.82
AP000253.1-201ENST00000449339 HDGFL1Q5TGJ6 251 aa20.2■□□□□ 0.82
AP000253.1-201ENST00000449339 SLC4A10Q6U841 1118 aa20.2■□□□□ 0.82
AP000253.1-201ENST00000449339 CHD1LQ86WJ1 897 aa20.2■□□□□ 0.82
AP000253.1-201ENST00000449339 SIPA1L3O60292 1781 aaPredicted RBP20.19■□□□□ 0.82
AP000253.1-201ENST00000449339 FLIIQ13045 1269 aa20.19■□□□□ 0.82
AP000253.1-201ENST00000449339 LNPKQ9C0E8 428 aa20.19■□□□□ 0.82
AP000253.1-201ENST00000449339 OVOS2A0A0G2JMS6 1433 aa20.19■□□□□ 0.82
AP000253.1-201ENST00000449339 ADAMTS7Q9UKP4 1686 aa20.18■□□□□ 0.82
AP000253.1-201ENST00000449339 PHKG2P15735 406 aa20.18■□□□□ 0.82
AP000253.1-201ENST00000449339 SPG7Q9UQ90 795 aa20.18■□□□□ 0.82
AP000253.1-201ENST00000449339 CACNA1FO60840 1977 aa20.18■□□□□ 0.82
AP000253.1-201ENST00000449339 SOS1Q07889 1333 aaPredicted RBP20.18■□□□□ 0.82
AP000253.1-201ENST00000449339 KDM6AO15550 1401 aaPredicted RBP20.18■□□□□ 0.82
AP000253.1-201ENST00000449339 FKBP5Q13451 457 aaPredicted RBP20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 SCN11AQ9UI33 1791 aa20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 TOM1L2Q6ZVM7 507 aa20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 MEIS3Q99687 375 aa20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 PHAXQ9H814 394 aaKnown RBP20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 UPF2Q9HAU5 1272 aaKnown RBP20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 DAXXQ9UER7 740 aaPredicted RBP20.17■□□□□ 0.82
AP000253.1-201ENST00000449339 COL5A2P05997 1499 aaPredicted RBP20.16■□□□□ 0.82
AP000253.1-201ENST00000449339 WDR17Q8IZU2 1322 aa20.16■□□□□ 0.82
AP000253.1-201ENST00000449339 ANKRD45Q5TZF3 282 aa20.16■□□□□ 0.82
AP000253.1-201ENST00000449339 CYP27B1O15528 508 aa20.15■□□□□ 0.82
AP000253.1-201ENST00000449339 ROBO1Q9Y6N7 1651 aa20.15■□□□□ 0.82
AP000253.1-201ENST00000449339 PKD1L3Q7Z443 1732 aa20.14■□□□□ 0.82
AP000253.1-201ENST00000449339 PRAMEF22A3QJZ6 481 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 SLC4A3P48751 1232 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 NBR1Q14596 966 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 IFNL2Q8IZJ0 200 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 STRN4Q9NRL3 753 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 CHPF2Q9P2E5 772 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 ANXA1P04083 346 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 SLC39A6Q13433 755 aa20.14■□□□□ 0.81
AP000253.1-201ENST00000449339 NFATC2IPQ8NCF5 419 aa20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 SLC52A2Q9HAB3 445 aa20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 LTBP4Q8N2S1 1624 aa20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 HOXB7P09629 217 aa20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 CCT4P50991 539 aaKnown RBP20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 LARP1Q6PKG0 1096 aaKnown RBP20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 ATP10DQ9P241 1426 aa20.12■□□□□ 0.81
AP000253.1-201ENST00000449339 GIGYF1O75420 1035 aaPredicted RBP20.11■□□□□ 0.81
AP000253.1-201ENST00000449339 RPAP2Q8IXW5 612 aaPredicted RBP20.11■□□□□ 0.81
AP000253.1-201ENST00000449339 ANKRD44Q8N8A2 993 aa20.11■□□□□ 0.81
AP000253.1-201ENST00000449339 TBC1D32Q96NH3 1257 aa20.11■□□□□ 0.81
AP000253.1-201ENST00000449339 HEG1Q9ULI3 1381 aa20.1■□□□□ 0.81
AP000253.1-201ENST00000449339 DCTPP1Q9H773 170 aa20.1■□□□□ 0.81
AP000253.1-201ENST00000449339 EVA1CP58658 441 aa20.09■□□□□ 0.81
AP000253.1-201ENST00000449339 CEP85Q6P2H3 762 aa20.09■□□□□ 0.81
AP000253.1-201ENST00000449339 PARP4Q9UKK3 1724 aaKnown RBP20.09■□□□□ 0.81
AP000253.1-201ENST00000449339 PROSER3Q2NL68 480 aa20.08■□□□□ 0.8
AP000253.1-201ENST00000449339 BMP2KLQ5H9B9 411 aa20.08■□□□□ 0.8
AP000253.1-201ENST00000449339 ZNF790Q6PG37 636 aa20.08■□□□□ 0.8
AP000253.1-201ENST00000449339 DCAF5Q96JK2 942 aa20.08■□□□□ 0.8
AP000253.1-201ENST00000449339 CARD10Q9BWT7 1032 aa20.07■□□□□ 0.8
AP000253.1-201ENST00000449339 ZCRB1Q8TBF4 217 aaKnown RBP20.07■□□□□ 0.8
AP000253.1-201ENST00000449339 USP35Q9P2H5 1018 aa20.07■□□□□ 0.8
AP000253.1-201ENST00000449339 PLEKHG2Q9H7P9 1386 aa20.06■□□□□ 0.8
AP000253.1-201ENST00000449339 N4BP2Q86UW6 1770 aaPredicted RBP20.06■□□□□ 0.8
AP000253.1-201ENST00000449339 C5P01031 1676 aa20.06■□□□□ 0.8
AP000253.1-201ENST00000449339 MFAP1P55081 439 aaKnown RBP20.05■□□□□ 0.8
AP000253.1-201ENST00000449339 BTG4Q9NY30 223 aa20.05■□□□□ 0.8
AP000253.1-201ENST00000449339 AHDC1Q5TGY3 1603 aaPredicted RBP20.05■□□□□ 0.8
AP000253.1-201ENST00000449339 MRC1P22897 1456 aa20.05■□□□□ 0.8
AP000253.1-201ENST00000449339 IL2RBP14784 551 aa20.04■□□□□ 0.8
AP000253.1-201ENST00000449339 DBF4Q9UBU7 674 aaPredicted RBP20.04■□□□□ 0.8
AP000253.1-201ENST00000449339 PI4KAP2A4QPH2 592 aa20.04■□□□□ 0.8
AP000253.1-201ENST00000449339 PI4KAP1Q8N8J0 262 aa20.04■□□□□ 0.8
AP000253.1-201ENST00000449339 HSP90AB1P08238 724 aaKnown RBP20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 CABP4P57796 275 aa20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 ZNF496Q96IT1 587 aaPredicted RBP20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 PXDNLA1KZ92 1463 aa20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 DDX54Q8TDD1 881 aaKnown RBP20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 PCDH11XQ9BZA7 1347 aa20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 PCDH11YQ9BZA8 1340 aa20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 SHANK3Q9BYB0 1731 aa20.03■□□□□ 0.8
AP000253.1-201ENST00000449339 GNAI2P04899 355 aa20.02■□□□□ 0.8
AP000253.1-201ENST00000449339 BECN1Q14457 450 aa20.02■□□□□ 0.8
AP000253.1-201ENST00000449339 CHMP4AQ9BY43 222 aa20.02■□□□□ 0.8
AP000253.1-201ENST00000449339 C22orf23Q9BZE7 217 aa20.02■□□□□ 0.8
AP000253.1-201ENST00000449339 ADCY9O60503 1353 aa20.02■□□□□ 0.79
AP000253.1-201ENST00000449339 USP44Q9H0E7 712 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms