RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 CHPF2Q9P2E5 772 aa18.39■□□□□ 0.53
SF1-211ENST00000448404 CCDC30Q5VVM6 783 aa18.38■□□□□ 0.53
SF1-211ENST00000448404 HSCBQ8IWL3 235 aa18.38■□□□□ 0.53
SF1-211ENST00000448404 IL1RAPL2Q9NP60 686 aa18.38■□□□□ 0.53
SF1-211ENST00000448404 HSPA2P54652 639 aa18.37■□□□□ 0.53
SF1-211ENST00000448404 RPAP2Q8IXW5 612 aaPredicted RBP18.37■□□□□ 0.53
SF1-211ENST00000448404 CDC45O75419 566 aa18.36■□□□□ 0.53
SF1-211ENST00000448404 RBM25P49756 843 aaKnown RBP18.36■□□□□ 0.53
SF1-211ENST00000448404 PROSER3Q2NL68 480 aa18.36■□□□□ 0.53
SF1-211ENST00000448404 ANKRD24Q8TF21 1146 aa18.36■□□□□ 0.53
SF1-211ENST00000448404 UBE2Q2Q8WVN8 375 aa18.36■□□□□ 0.53
SF1-211ENST00000448404 KRT28Q7Z3Y7 464 aa18.36■□□□□ 0.53
SF1-211ENST00000448404 MAP4K4O95819 1239 aaPredicted RBP18.35■□□□□ 0.53
SF1-211ENST00000448404 USP44Q9H0E7 712 aa18.35■□□□□ 0.53
SF1-211ENST00000448404 RGPD2P0DJD1 1756 aa18.35■□□□□ 0.53
SF1-211ENST00000448404 GNAI2P04899 355 aa18.35■□□□□ 0.53
SF1-211ENST00000448404 NBPF7P0C2Y1 421 aaPredicted RBP18.35■□□□□ 0.53
SF1-211ENST00000448404 PIP4K2AP48426 406 aaPredicted RBP18.35■□□□□ 0.53
SF1-211ENST00000448404 CHRNA2Q15822 529 aa18.35■□□□□ 0.53
SF1-211ENST00000448404 NPHP4O75161 1426 aaPredicted RBP18.34■□□□□ 0.53
SF1-211ENST00000448404 ADGRL3Q9HAR2 1447 aa18.34■□□□□ 0.53
SF1-211ENST00000448404 HSP90AB1P08238 724 aaKnown RBP18.34■□□□□ 0.53
SF1-211ENST00000448404 HAP1P54257 671 aaPredicted RBP18.34■□□□□ 0.53
SF1-211ENST00000448404 PXDNQ92626 1479 aa18.34■□□□□ 0.53
SF1-211ENST00000448404 CCT4P50991 539 aaKnown RBP18.34■□□□□ 0.53
SF1-211ENST00000448404 TEFQ10587 303 aa18.34■□□□□ 0.53
SF1-211ENST00000448404 PI4KAP2A4QPH2 592 aa18.33■□□□□ 0.53
SF1-211ENST00000448404 BTBD11A6QL63 1104 aa18.33■□□□□ 0.53
SF1-211ENST00000448404 EIF4A1P60842 406 aaKnown RBP18.33■□□□□ 0.53
SF1-211ENST00000448404 SLC39A6Q13433 755 aa18.33■□□□□ 0.53
SF1-211ENST00000448404 ARHGEF25Q86VW2 580 aa18.33■□□□□ 0.53
SF1-211ENST00000448404 PI4KAP1Q8N8J0 262 aa18.33■□□□□ 0.53
SF1-211ENST00000448404 CHD2O14647 1828 aaKnown RBP18.33■□□□□ 0.52
SF1-211ENST00000448404 LTN1O94822 1766 aa18.32■□□□□ 0.52
SF1-211ENST00000448404 NUTM1Q86Y26 1132 aa18.32■□□□□ 0.52
SF1-211ENST00000448404 UNC5CLQ8IV45 518 aa18.31■□□□□ 0.52
SF1-211ENST00000448404 HSP90AA1P07900 732 aaKnown RBP18.31■□□□□ 0.52
SF1-211ENST00000448404 PDE1AP54750 535 aa18.3■□□□□ 0.52
SF1-211ENST00000448404 AIMP1Q12904 312 aaKnown RBP18.3■□□□□ 0.52
SF1-211ENST00000448404 NFAT5O94916 1531 aa18.3■□□□□ 0.52
SF1-211ENST00000448404 HTATSF1O43719 755 aaKnown RBP18.3■□□□□ 0.52
SF1-211ENST00000448404 RILPL2Q969X0 211 aa18.3■□□□□ 0.52
SF1-211ENST00000448404 NLRP2Q9NX02 1062 aa18.3■□□□□ 0.52
SF1-211ENST00000448404 KIF24Q5T7B8 1368 aa18.29■□□□□ 0.52
SF1-211ENST00000448404 UBTFL1P0CB47 393 aaPredicted RBP18.29■□□□□ 0.52
SF1-211ENST00000448404 KCNH5Q8NCM2 988 aa18.29■□□□□ 0.52
SF1-211ENST00000448404 HMMRO75330 724 aa18.28■□□□□ 0.52
SF1-211ENST00000448404 NOL8Q76FK4 1167 aaKnown RBP18.28■□□□□ 0.52
SF1-211ENST00000448404 CHAMP1Q96JM3 812 aa18.28■□□□□ 0.52
SF1-211ENST00000448404 TRIM6-TRIM34B2RNG4 842 aa18.28■□□□□ 0.52
SF1-211ENST00000448404 CWF19L2Q2TBE0 894 aaKnown RBP18.28■□□□□ 0.52
SF1-211ENST00000448404 PPP1R42Q7Z4L9 355 aa18.28■□□□□ 0.52
SF1-211ENST00000448404 JARID2Q92833 1246 aaPredicted RBP18.28■□□□□ 0.52
SF1-211ENST00000448404 IL25Q9H293 177 aa18.28■□□□□ 0.52
SF1-211ENST00000448404 USP26Q9BXU7 913 aa18.27■□□□□ 0.52
SF1-211ENST00000448404 CEMIPQ8WUJ3 1361 aa18.27■□□□□ 0.52
SF1-211ENST00000448404 RNMTO43148 476 aaKnown RBP18.27■□□□□ 0.51
SF1-211ENST00000448404 MCM4P33991 863 aa18.27■□□□□ 0.51
SF1-211ENST00000448404 C1orf141Q5JVX7 400 aa18.27■□□□□ 0.51
SF1-211ENST00000448404 CHMP5Q9NZZ3 219 aa18.27■□□□□ 0.51
SF1-211ENST00000448404 DTNBO60941 627 aa18.26■□□□□ 0.51
SF1-211ENST00000448404 SURF6O75683 361 aaKnown RBP18.26■□□□□ 0.51
SF1-211ENST00000448404 ATP8B2P98198 1209 aa18.26■□□□□ 0.51
SF1-211ENST00000448404 PLEKHO1Q53GL0 409 aaPredicted RBP18.26■□□□□ 0.51
SF1-211ENST00000448404 LRRCC1Q9C099 1032 aa18.26■□□□□ 0.51
SF1-211ENST00000448404 SRGAP3O43295 1099 aa18.25■□□□□ 0.51
SF1-211ENST00000448404 PKP1Q13835 747 aa18.25■□□□□ 0.51
SF1-211ENST00000448404 AKAP4Q5JQC9 854 aa18.25■□□□□ 0.51
SF1-211ENST00000448404 SRCIN1Q9C0H9 1055 aa18.25■□□□□ 0.51
SF1-211ENST00000448404 SOS1Q07889 1333 aaPredicted RBP18.25■□□□□ 0.51
SF1-211ENST00000448404 GNAI3P08754 354 aa18.25■□□□□ 0.51
SF1-211ENST00000448404 TNPO1Q92973 898 aaKnown RBP18.25■□□□□ 0.51
SF1-211ENST00000448404 PA2G4Q9UQ80 394 aaKnown RBP18.24■□□□□ 0.51
SF1-211ENST00000448404 CSB-PGBD3P0DP91 1061 aa18.24■□□□□ 0.51
SF1-211ENST00000448404 MYL6BP14649 208 aa18.24■□□□□ 0.51
SF1-211ENST00000448404 MX1P20591 662 aa18.23■□□□□ 0.51
SF1-211ENST00000448404 SSFA2P28290 1259 aa18.23■□□□□ 0.51
SF1-211ENST00000448404 FOXD4L5Q5VV16 416 aaPredicted RBP18.23■□□□□ 0.51
SF1-211ENST00000448404 FOXD4L4Q8WXT5 416 aaPredicted RBP18.23■□□□□ 0.51
SF1-211ENST00000448404 MAP3K2Q9Y2U5 619 aa18.23■□□□□ 0.51
SF1-211ENST00000448404 K7ELQ4 463 aaPredicted RBP18.23■□□□□ 0.51
SF1-211ENST00000448404 DNAAF4Q8WXU2 420 aa18.23■□□□□ 0.51
SF1-211ENST00000448404 C19orf44Q9H6X5 657 aa18.23■□□□□ 0.51
SF1-211ENST00000448404 TMEM94Q12767 1356 aa18.23■□□□□ 0.51
SF1-211ENST00000448404 BEND3Q5T5X7 828 aa18.22■□□□□ 0.51
SF1-211ENST00000448404 PALD1Q9ULE6 856 aa18.22■□□□□ 0.51
SF1-211ENST00000448404 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.22■□□□□ 0.51
SF1-211ENST00000448404 LRRC37A3O60309 1634 aa18.22■□□□□ 0.51
SF1-211ENST00000448404 NFATC2IPQ8NCF5 419 aa18.22■□□□□ 0.51
SF1-211ENST00000448404 SNX21Q969T3 373 aa18.22■□□□□ 0.51
SF1-211ENST00000448404 ATF3P18847 181 aa18.21■□□□□ 0.51
SF1-211ENST00000448404 DDIT3P35638 169 aa18.21■□□□□ 0.51
SF1-211ENST00000448404 ZGPATQ8N5A5 531 aaKnown RBP18.21■□□□□ 0.51
SF1-211ENST00000448404 C1orf167Q5SNV9 1468 aa18.21■□□□□ 0.51
SF1-211ENST00000448404 ADCY9O60503 1353 aa18.21■□□□□ 0.51
SF1-211ENST00000448404 GIGYF1O75420 1035 aaPredicted RBP18.21■□□□□ 0.51
SF1-211ENST00000448404 FAM208AQ9UK61 1670 aaKnown RBP18.21■□□□□ 0.51
SF1-211ENST00000448404 ERBB3P21860 1342 aa18.21■□□□□ 0.51
SF1-211ENST00000448404 KLHDC4Q8TBB5 520 aa18.2■□□□□ 0.5
SF1-211ENST00000448404 AK9Q5TCS8 1911 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms