RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 ANKLE2Q86XL3 938 aa19.75■□□□□ 0.75
SHQ1-202ENST00000444040 EXOC6BQ9Y2D4 811 aa19.75■□□□□ 0.75
SHQ1-202ENST00000444040 HSP90AA1P07900 732 aaKnown RBP19.75■□□□□ 0.75
SHQ1-202ENST00000444040 ATP8B2P98198 1209 aa19.75■□□□□ 0.75
SHQ1-202ENST00000444040 CASC1Q6TDU7 716 aa19.75■□□□□ 0.75
SHQ1-202ENST00000444040 FOXD4L1Q9NU39 408 aa19.75■□□□□ 0.75
SHQ1-202ENST00000444040 LTN1O94822 1766 aa19.74■□□□□ 0.75
SHQ1-202ENST00000444040 PNMA6EA0A0J9YXQ4 647 aa19.74■□□□□ 0.75
SHQ1-202ENST00000444040 PXDNLA1KZ92 1463 aa19.74■□□□□ 0.75
SHQ1-202ENST00000444040 NBPF6Q5VWK0 638 aa19.74■□□□□ 0.75
SHQ1-202ENST00000444040 RBM33Q96EV2 1170 aaKnown RBP19.74■□□□□ 0.75
SHQ1-202ENST00000444040 NBPF4Q96M43 638 aa19.74■□□□□ 0.75
SHQ1-202ENST00000444040 GZF1Q9H116 711 aaPredicted RBP19.73■□□□□ 0.75
SHQ1-202ENST00000444040 CACNA1FO60840 1977 aa19.72■□□□□ 0.75
SHQ1-202ENST00000444040 N4BP2Q86UW6 1770 aaPredicted RBP19.72■□□□□ 0.75
SHQ1-202ENST00000444040 MED1Q15648 1581 aaPredicted RBP19.72■□□□□ 0.75
SHQ1-202ENST00000444040 USP44Q9H0E7 712 aa19.72■□□□□ 0.75
SHQ1-202ENST00000444040 GBP4Q96PP9 640 aa19.71■□□□□ 0.75
SHQ1-202ENST00000444040 LRRCC1Q9C099 1032 aa19.71■□□□□ 0.75
SHQ1-202ENST00000444040 IBTKQ9P2D0 1353 aaPredicted RBP19.71■□□□□ 0.75
SHQ1-202ENST00000444040 HDGFL1Q5TGJ6 251 aa19.71■□□□□ 0.75
SHQ1-202ENST00000444040 ADGRL3Q9HAR2 1447 aa19.71■□□□□ 0.75
SHQ1-202ENST00000444040 GOLGA6L3A6NEY3 463 aa19.71■□□□□ 0.74
SHQ1-202ENST00000444040 REC8O95072 547 aa19.71■□□□□ 0.74
SHQ1-202ENST00000444040 ERC2O15083 957 aa19.7■□□□□ 0.74
SHQ1-202ENST00000444040 PHAXQ9H814 394 aaKnown RBP19.7■□□□□ 0.74
SHQ1-202ENST00000444040 LRRFIP2Q9Y608 721 aaKnown RBP19.7■□□□□ 0.74
SHQ1-202ENST00000444040 XRCC6P12956 609 aaKnown RBP eCLIP19.69■□□□□ 0.74
SHQ1-202ENST00000444040 ESCO1Q5FWF5 840 aa19.69■□□□□ 0.74
SHQ1-202ENST00000444040 LGR6Q9HBX8 967 aa19.69■□□□□ 0.74
SHQ1-202ENST00000444040 EIF4A1P60842 406 aaKnown RBP19.69■□□□□ 0.74
SHQ1-202ENST00000444040 PSME1Q06323 249 aa19.69■□□□□ 0.74
SHQ1-202ENST00000444040 CLEC17AQ6ZS10 378 aa19.69■□□□□ 0.74
SHQ1-202ENST00000444040 KCNH5Q8NCM2 988 aa19.69■□□□□ 0.74
SHQ1-202ENST00000444040 ZNF142P52746 1687 aaPredicted RBP19.68■□□□□ 0.74
SHQ1-202ENST00000444040 PHRF1Q9P1Y6 1649 aaKnown RBP19.68■□□□□ 0.74
SHQ1-202ENST00000444040 TSHZ3Q63HK5 1081 aa19.68■□□□□ 0.74
SHQ1-202ENST00000444040 MX1P20591 662 aa19.67■□□□□ 0.74
SHQ1-202ENST00000444040 SSFA2P28290 1259 aa19.67■□□□□ 0.74
SHQ1-202ENST00000444040 TUBGCP6Q96RT7 1819 aa19.67■□□□□ 0.74
SHQ1-202ENST00000444040 STAP2Q9UGK3 403 aa19.66■□□□□ 0.74
SHQ1-202ENST00000444040 HOXB7P09629 217 aa19.66■□□□□ 0.74
SHQ1-202ENST00000444040 UBTFL1P0CB47 393 aaPredicted RBP19.66■□□□□ 0.74
SHQ1-202ENST00000444040 SSH3Q8TE77 659 aa19.66■□□□□ 0.74
SHQ1-202ENST00000444040 LRRC59Q96AG4 307 aaKnown RBP19.65■□□□□ 0.74
SHQ1-202ENST00000444040 KDM3BQ7LBC6 1761 aa19.65■□□□□ 0.74
SHQ1-202ENST00000444040 TRHP20396 242 aaPredicted RBP19.64■□□□□ 0.73
SHQ1-202ENST00000444040 PTMSP20962 102 aa19.64■□□□□ 0.73
SHQ1-202ENST00000444040 KCNQ3O43525 872 aa19.64■□□□□ 0.73
SHQ1-202ENST00000444040 ST18O60284 1047 aa19.64■□□□□ 0.73
SHQ1-202ENST00000444040 EIF2S2P20042 333 aaKnown RBP19.64■□□□□ 0.73
SHQ1-202ENST00000444040 SKOR2Q2VWA4 1001 aaPredicted RBP19.64■□□□□ 0.73
SHQ1-202ENST00000444040 AKAP4Q5JQC9 854 aa19.64■□□□□ 0.73
SHQ1-202ENST00000444040 ESYT1Q9BSJ8 1104 aa19.63■□□□□ 0.73
SHQ1-202ENST00000444040 SRCIN1Q9C0H9 1055 aa19.63■□□□□ 0.73
SHQ1-202ENST00000444040 NCAPD2Q15021 1401 aa19.63■□□□□ 0.73
SHQ1-202ENST00000444040 POLA2Q14181 598 aa19.63■□□□□ 0.73
SHQ1-202ENST00000444040 LMO7Q8WWI1 1683 aa19.63■□□□□ 0.73
SHQ1-202ENST00000444040 CYP2E1P05181 493 aaPredicted RBP19.62■□□□□ 0.73
SHQ1-202ENST00000444040 ARHGEF25Q86VW2 580 aa19.62■□□□□ 0.73
SHQ1-202ENST00000444040 ARXQ96QS3 562 aa19.62■□□□□ 0.73
SHQ1-202ENST00000444040 CHPF2Q9P2E5 772 aa19.62■□□□□ 0.73
SHQ1-202ENST00000444040 RGPD2P0DJD1 1756 aa19.62■□□□□ 0.73
SHQ1-202ENST00000444040 FAM43AQ8N2R8 423 aa19.62■□□□□ 0.73
SHQ1-202ENST00000444040 ZBTB7CA1YPR0 619 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 GCP02774 474 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 CHMLP26374 656 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 ZNF530Q6P9A1 599 aaPredicted RBP19.61■□□□□ 0.73
SHQ1-202ENST00000444040 ORAI2Q96SN7 254 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 BAG4O95429 457 aaKnown RBP19.61■□□□□ 0.73
SHQ1-202ENST00000444040 MRE11P49959 708 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 PLEKHO1Q53GL0 409 aaPredicted RBP19.61■□□□□ 0.73
SHQ1-202ENST00000444040 BEND3Q5T5X7 828 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 PPP1R42Q7Z4L9 355 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 ISY1Q9ULR0 285 aaKnown RBP19.61■□□□□ 0.73
SHQ1-202ENST00000444040 AOX1Q06278 1338 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 SLIT3O75094 1523 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 PANK2Q9BZ23 570 aa19.61■□□□□ 0.73
SHQ1-202ENST00000444040 NUCB2P80303 420 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 CHMP4AQ9BY43 222 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 CWC22Q9HCG8 908 aaKnown RBP19.6■□□□□ 0.73
SHQ1-202ENST00000444040 BTBD11A6QL63 1104 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 TEFQ10587 303 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 MPRIPQ6WCQ1 1025 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 UNC5CLQ8IV45 518 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 DNAAF4Q8WXU2 420 aa19.6■□□□□ 0.73
SHQ1-202ENST00000444040 PI4KAP2A4QPH2 592 aa19.59■□□□□ 0.73
SHQ1-202ENST00000444040 RAB11FIP3O75154 756 aa19.59■□□□□ 0.73
SHQ1-202ENST00000444040 NBPF7P0C2Y1 421 aaPredicted RBP19.59■□□□□ 0.73
SHQ1-202ENST00000444040 AMOTQ4VCS5 1084 aa19.59■□□□□ 0.73
SHQ1-202ENST00000444040 PI4KAP1Q8N8J0 262 aa19.59■□□□□ 0.73
SHQ1-202ENST00000444040 SETD1BQ9UPS6 1966 aaKnown RBP19.59■□□□□ 0.73
SHQ1-202ENST00000444040 PXDNQ92626 1479 aa19.59■□□□□ 0.73
SHQ1-202ENST00000444040 IL1RAPL2Q9NP60 686 aa19.59■□□□□ 0.73
SHQ1-202ENST00000444040 NPHP4O75161 1426 aaPredicted RBP19.59■□□□□ 0.73
SHQ1-202ENST00000444040 TRIM6-TRIM34B2RNG4 842 aa19.58■□□□□ 0.73
SHQ1-202ENST00000444040 RILPL2Q969X0 211 aa19.58■□□□□ 0.73
SHQ1-202ENST00000444040 RNMTO43148 476 aaKnown RBP19.58■□□□□ 0.72
SHQ1-202ENST00000444040 ZGPATQ8N5A5 531 aaKnown RBP19.58■□□□□ 0.72
SHQ1-202ENST00000444040 GRPEL1Q9HAV7 217 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms