RNA–Protein interactions for RNA: ENST00000443016.1

USP6NL-203, Transcript of USP6 N-terminal like, humanhuman

TSL 2

Gene USP6NL, Length 2,491 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-203ENST00000443016 SYT17Q9BSW7 474 aa11.84□□□□□ -0.51
USP6NL-203ENST00000443016 DCAF5Q96JK2 942 aa11.83□□□□□ -0.52
USP6NL-203ENST00000443016 AK7Q96M32 723 aa11.83□□□□□ -0.52
USP6NL-203ENST00000443016 SGIP1Q9BQI5 828 aa11.83□□□□□ -0.52
USP6NL-203ENST00000443016 ASAP1Q9ULH1 1129 aa11.83□□□□□ -0.52
USP6NL-203ENST00000443016 PLEKHG2Q9H7P9 1386 aa11.83□□□□□ -0.52
USP6NL-203ENST00000443016 LY75O60449 1722 aa11.83□□□□□ -0.52
USP6NL-203ENST00000443016 LOC102724428A0A0B4J2F2 783 aa11.82□□□□□ -0.52
USP6NL-203ENST00000443016 IL13P35225 146 aa11.82□□□□□ -0.52
USP6NL-203ENST00000443016 SIK1P57059 783 aa11.82□□□□□ -0.52
USP6NL-203ENST00000443016 COL23A1Q86Y22 540 aaPredicted RBP11.82□□□□□ -0.52
USP6NL-203ENST00000443016 FLAD1Q8NFF5 587 aa11.82□□□□□ -0.52
USP6NL-203ENST00000443016 ERVV-2B6SEH9 535 aa11.81□□□□□ -0.52
USP6NL-203ENST00000443016 ATP6V1AP38606 617 aa11.81□□□□□ -0.52
USP6NL-203ENST00000443016 CABP4P57796 275 aa11.81□□□□□ -0.52
USP6NL-203ENST00000443016 DIAPH1O60610 1272 aaKnown RBP11.81□□□□□ -0.52
USP6NL-203ENST00000443016 PHF14O94880 888 aa11.81□□□□□ -0.52
USP6NL-203ENST00000443016 TOGARAM1Q9Y4F4 1720 aa11.8□□□□□ -0.52
USP6NL-203ENST00000443016 HMOX1P09601 288 aa11.8□□□□□ -0.52
USP6NL-203ENST00000443016 ITGB4P16144 1822 aa11.8□□□□□ -0.52
USP6NL-203ENST00000443016 MSL1Q68DK7 614 aa11.8□□□□□ -0.52
USP6NL-203ENST00000443016 RBM42Q9BTD8 480 aaKnown RBP11.8□□□□□ -0.52
USP6NL-203ENST00000443016 ATG3Q9NT62 314 aa11.8□□□□□ -0.52
USP6NL-203ENST00000443016 ZNF316A6NFI3 1004 aaPredicted RBP11.79□□□□□ -0.52
USP6NL-203ENST00000443016 YY1P25490 414 aa11.79□□□□□ -0.52
USP6NL-203ENST00000443016 KDRP35968 1356 aa11.79□□□□□ -0.52
USP6NL-203ENST00000443016 U2SURPO15042 1029 aaKnown RBP11.78□□□□□ -0.52
USP6NL-203ENST00000443016 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.78□□□□□ -0.52
USP6NL-203ENST00000443016 GNPATO15228 680 aa11.78□□□□□ -0.52
USP6NL-203ENST00000443016 NFATC2IPQ8NCF5 419 aa11.78□□□□□ -0.52
USP6NL-203ENST00000443016 LINC00116Q8NCU8 138 aa11.78□□□□□ -0.52
USP6NL-203ENST00000443016 C5P01031 1676 aa11.78□□□□□ -0.52
USP6NL-203ENST00000443016 NPC1L1Q9UHC9 1359 aa11.77□□□□□ -0.53
USP6NL-203ENST00000443016 PTCD1O75127 700 aaKnown RBP11.77□□□□□ -0.53
USP6NL-203ENST00000443016 ITPK1Q13572 414 aa11.77□□□□□ -0.53
USP6NL-203ENST00000443016 GPR162Q16538 588 aa11.77□□□□□ -0.53
USP6NL-203ENST00000443016 AKAP4Q5JQC9 854 aa11.77□□□□□ -0.53
USP6NL-203ENST00000443016 QSER1Q2KHR3 1735 aa11.76□□□□□ -0.53
USP6NL-203ENST00000443016 SSFA2P28290 1259 aa11.76□□□□□ -0.53
USP6NL-203ENST00000443016 SMIM5Q71RC9 77 aa11.76□□□□□ -0.53
USP6NL-203ENST00000443016 KDM6AO15550 1401 aaPredicted RBP11.76□□□□□ -0.53
USP6NL-203ENST00000443016 CFAP53Q96M91 514 aa11.76□□□□□ -0.53
USP6NL-203ENST00000443016 TUBGCP6Q96RT7 1819 aa11.75□□□□□ -0.53
USP6NL-203ENST00000443016 C4BP0C0L5 1744 aa11.75□□□□□ -0.53
USP6NL-203ENST00000443016 MAP3K5Q99683 1374 aa11.75□□□□□ -0.53
USP6NL-203ENST00000443016 AMIGO3Q86WK7 504 aa11.75□□□□□ -0.53
USP6NL-203ENST00000443016 RTCBQ9Y3I0 505 aaKnown RBP11.75□□□□□ -0.53
USP6NL-203ENST00000443016 TAF1LQ8IZX4 1826 aa11.74□□□□□ -0.53
USP6NL-203ENST00000443016 EIF5BO60841 1220 aaKnown RBP11.74□□□□□ -0.53
USP6NL-203ENST00000443016 MTHFSDQ2M296 383 aaKnown RBP11.73□□□□□ -0.53
USP6NL-203ENST00000443016 TRAPPC3LQ5T215 181 aa11.73□□□□□ -0.53
USP6NL-203ENST00000443016 NLGN2Q8NFZ4 835 aa11.73□□□□□ -0.53
USP6NL-203ENST00000443016 SLC4A9Q96Q91 983 aa11.73□□□□□ -0.53
USP6NL-203ENST00000443016 LGR6Q9HBX8 967 aa11.73□□□□□ -0.53
USP6NL-203ENST00000443016 SLC52A2Q9HAB3 445 aa11.72□□□□□ -0.53
USP6NL-203ENST00000443016 NUDCQ9Y266 331 aa11.72□□□□□ -0.53
USP6NL-203ENST00000443016 RNMTO43148 476 aaKnown RBP11.71□□□□□ -0.53
USP6NL-203ENST00000443016 RFC4P35249 363 aa11.71□□□□□ -0.53
USP6NL-203ENST00000443016 PAXIP1Q6ZW49 1069 aaPredicted RBP11.71□□□□□ -0.53
USP6NL-203ENST00000443016 RC3H1Q5TC82 1133 aaKnown RBP11.7□□□□□ -0.54
USP6NL-203ENST00000443016 GAS2L2Q8NHY3 880 aa11.7□□□□□ -0.54
USP6NL-203ENST00000443016 TSHZ2Q9NRE2 1034 aa11.7□□□□□ -0.54
USP6NL-203ENST00000443016 CD2APQ9Y5K6 639 aa11.7□□□□□ -0.54
USP6NL-203ENST00000443016 CNTNAP4Q9C0A0 1308 aa11.7□□□□□ -0.54
USP6NL-203ENST00000443016 RPS6KA4O75676 772 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 U2AF1L5P0DN76 240 aaPredicted RBP11.69□□□□□ -0.54
USP6NL-203ENST00000443016 PPP2R1AP30153 589 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 U2AF1Q01081 240 aaKnown RBP eCLIP11.69□□□□□ -0.54
USP6NL-203ENST00000443016 TEFQ10587 303 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 SLC39A6Q13433 755 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 ARHGEF1Q92888 912 aaKnown RBP11.69□□□□□ -0.54
USP6NL-203ENST00000443016 UBR3Q6ZT12 1888 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 GNAT3A8MTJ3 354 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 MMP10P09238 476 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 CRKLP46109 303 aaKnown RBP11.69□□□□□ -0.54
USP6NL-203ENST00000443016 TTC5Q8N0Z6 440 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 NLGN1Q8N2Q7 840 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 CFAP44Q96MT7 982 aa11.69□□□□□ -0.54
USP6NL-203ENST00000443016 PRKAR2BP31323 418 aa11.68□□□□□ -0.54
USP6NL-203ENST00000443016 COL3A1P02461 1466 aaPredicted RBP11.68□□□□□ -0.54
USP6NL-203ENST00000443016 COL24A1Q17RW2 1714 aa11.67□□□□□ -0.54
USP6NL-203ENST00000443016 GRIN3BO60391 1043 aa11.67□□□□□ -0.54
USP6NL-203ENST00000443016 DNAJC10Q8IXB1 793 aa11.67□□□□□ -0.54
USP6NL-203ENST00000443016 WWC3Q9ULE0 1092 aa11.67□□□□□ -0.54
USP6NL-203ENST00000443016 SCN11AQ9UI33 1791 aa11.66□□□□□ -0.54
USP6NL-203ENST00000443016 PHACTR3Q96KR7 559 aa11.66□□□□□ -0.54
USP6NL-203ENST00000443016 NEFMP07197 916 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 GYS1P13807 737 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 YBX3P16989 372 aaKnown RBP eCLIP11.65□□□□□ -0.54
USP6NL-203ENST00000443016 RTF1Q92541 710 aaKnown RBP11.65□□□□□ -0.54
USP6NL-203ENST00000443016 RSPH6AQ9H0K4 717 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 CCDC87Q9NVE4 849 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 PARP3Q9Y6F1 533 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 FCHSD2O94868 740 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 IL17REQ8NFR9 667 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 FBXO3Q9UK99 471 aa11.65□□□□□ -0.54
USP6NL-203ENST00000443016 ZNF831Q5JPB2 1677 aa11.65□□□□□ -0.55
USP6NL-203ENST00000443016 ZPR1O75312 459 aa11.64□□□□□ -0.55
USP6NL-203ENST00000443016 ZNF784Q8NCA9 323 aaPredicted RBP11.64□□□□□ -0.55
USP6NL-203ENST00000443016 STARD3NLO95772 234 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms