RNA–Protein interactions for RNA: ENST00000439958.7

CPSF7-205, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF7, Length 3,524 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-205ENST00000439958 RGPD1P0DJD0 1748 aa18.97■□□□□ 0.63
CPSF7-205ENST00000439958 CABP4P57796 275 aa18.96■□□□□ 0.63
CPSF7-205ENST00000439958 ZNF330Q9Y3S2 320 aaPredicted RBP18.96■□□□□ 0.63
CPSF7-205ENST00000439958 SYTL4Q96C24 671 aaPredicted RBP18.96■□□□□ 0.63
CPSF7-205ENST00000439958 ARXQ96QS3 562 aa18.96■□□□□ 0.63
CPSF7-205ENST00000439958 MYT1Q01538 1121 aa18.96■□□□□ 0.63
CPSF7-205ENST00000439958 SLIT3O75094 1523 aa18.95■□□□□ 0.62
CPSF7-205ENST00000439958 MYL6BP14649 208 aa18.95■□□□□ 0.62
CPSF7-205ENST00000439958 ANKRD45Q5TZF3 282 aa18.95■□□□□ 0.62
CPSF7-205ENST00000439958 ARHGAP45Q92619 1136 aa18.95■□□□□ 0.62
CPSF7-205ENST00000439958 MEIS3Q99687 375 aa18.95■□□□□ 0.62
CPSF7-205ENST00000439958 ZBTB7BO15156 539 aaPredicted RBP18.94■□□□□ 0.62
CPSF7-205ENST00000439958 PHKG2P15735 406 aa18.94■□□□□ 0.62
CPSF7-205ENST00000439958 EIF4A1P60842 406 aaKnown RBP18.94■□□□□ 0.62
CPSF7-205ENST00000439958 CYP27B1O15528 508 aa18.94■□□□□ 0.62
CPSF7-205ENST00000439958 PTCD1O75127 700 aaKnown RBP18.94■□□□□ 0.62
CPSF7-205ENST00000439958 ANP32AP39687 249 aaKnown RBP18.94■□□□□ 0.62
CPSF7-205ENST00000439958 TRPM3Q9HCF6 1732 aaPredicted RBP18.94■□□□□ 0.62
CPSF7-205ENST00000439958 ZCRB1Q8TBF4 217 aaKnown RBP18.94■□□□□ 0.62
CPSF7-205ENST00000439958 CHMP4BQ9H444 224 aaKnown RBP18.93■□□□□ 0.62
CPSF7-205ENST00000439958 WDR17Q8IZU2 1322 aa18.93■□□□□ 0.62
CPSF7-205ENST00000439958 ERICH6Q7L0X2 663 aa18.92■□□□□ 0.62
CPSF7-205ENST00000439958 RGPD5Q99666 1765 aa18.92■□□□□ 0.62
CPSF7-205ENST00000439958 IL2RBP14784 551 aa18.91■□□□□ 0.62
CPSF7-205ENST00000439958 MEGF6O75095 1541 aa18.91■□□□□ 0.62
CPSF7-205ENST00000439958 TOM1O60784 492 aa18.91■□□□□ 0.62
CPSF7-205ENST00000439958 ABCC4O15439 1325 aa18.91■□□□□ 0.62
CPSF7-205ENST00000439958 XIRP1Q702N8 1843 aaKnown RBP18.9■□□□□ 0.62
CPSF7-205ENST00000439958 AAMPQ13685 434 aa18.9■□□□□ 0.62
CPSF7-205ENST00000439958 PTPRCP08575 1304 aa18.9■□□□□ 0.62
CPSF7-205ENST00000439958 PI4KAP2A4QPH2 592 aa18.89■□□□□ 0.61
CPSF7-205ENST00000439958 ZNF790Q6PG37 636 aa18.89■□□□□ 0.61
CPSF7-205ENST00000439958 PI4KAP1Q8N8J0 262 aa18.89■□□□□ 0.61
CPSF7-205ENST00000439958 SLC52A2Q9HAB3 445 aa18.89■□□□□ 0.61
CPSF7-205ENST00000439958 BRPF1P55201 1214 aaPredicted RBP18.88■□□□□ 0.61
CPSF7-205ENST00000439958 PROSER3Q2NL68 480 aa18.88■□□□□ 0.61
CPSF7-205ENST00000439958 ALS2Q96Q42 1657 aa18.88■□□□□ 0.61
CPSF7-205ENST00000439958 ZNF496Q96IT1 587 aaPredicted RBP18.88■□□□□ 0.61
CPSF7-205ENST00000439958 CEMIPQ8WUJ3 1361 aa18.88■□□□□ 0.61
CPSF7-205ENST00000439958 DCAF5Q96JK2 942 aa18.87■□□□□ 0.61
CPSF7-205ENST00000439958 BACH2Q9BYV9 841 aa18.87■□□□□ 0.61
CPSF7-205ENST00000439958 CPDO75976 1380 aa18.86■□□□□ 0.61
CPSF7-205ENST00000439958 GIGYF1O75420 1035 aaPredicted RBP18.86■□□□□ 0.61
CPSF7-205ENST00000439958 FAM161AQ3B820 660 aa18.86■□□□□ 0.61
CPSF7-205ENST00000439958 CCT4P50991 539 aaKnown RBP18.85■□□□□ 0.61
CPSF7-205ENST00000439958 CAMTA1Q9Y6Y1 1673 aa18.85■□□□□ 0.61
CPSF7-205ENST00000439958 HSP90AB1P08238 724 aaKnown RBP18.84■□□□□ 0.61
CPSF7-205ENST00000439958 INTS3Q68E01 1043 aaKnown RBP18.84■□□□□ 0.61
CPSF7-205ENST00000439958 DBF4Q9UBU7 674 aaPredicted RBP18.84■□□□□ 0.61
CPSF7-205ENST00000439958 CARD10Q9BWT7 1032 aa18.84■□□□□ 0.61
CPSF7-205ENST00000439958 HDAC1Q13547 482 aaPredicted RBP18.84■□□□□ 0.61
CPSF7-205ENST00000439958 PCDH11XQ9BZA7 1347 aa18.83■□□□□ 0.61
CPSF7-205ENST00000439958 PCDH11YQ9BZA8 1340 aa18.83■□□□□ 0.61
CPSF7-205ENST00000439958 UBTFL1P0CB47 393 aaPredicted RBP18.83■□□□□ 0.6
CPSF7-205ENST00000439958 RIC3Q7Z5B4 369 aa18.83■□□□□ 0.6
CPSF7-205ENST00000439958 SIRT2Q8IXJ6 389 aa18.83■□□□□ 0.6
CPSF7-205ENST00000439958 C8orf37Q96NL8 207 aa18.83■□□□□ 0.6
CPSF7-205ENST00000439958 RBM42Q9BTD8 480 aaKnown RBP18.83■□□□□ 0.6
CPSF7-205ENST00000439958 BABAM1Q9NWV8 329 aa18.83■□□□□ 0.6
CPSF7-205ENST00000439958 SRCIN1Q9C0H9 1055 aa18.82■□□□□ 0.6
CPSF7-205ENST00000439958 USP16Q9Y5T5 823 aa18.82■□□□□ 0.6
CPSF7-205ENST00000439958 SMARCA5O60264 1052 aaPredicted RBP18.82■□□□□ 0.6
CPSF7-205ENST00000439958 MAP3K2Q9Y2U5 619 aa18.82■□□□□ 0.6
CPSF7-205ENST00000439958 C9orf78Q9NZ63 289 aaPredicted RBP18.82■□□□□ 0.6
CPSF7-205ENST00000439958 LRRFIP2Q9Y608 721 aaKnown RBP18.82■□□□□ 0.6
CPSF7-205ENST00000439958 RTL5Q5HYW3 569 aaPredicted RBP18.81■□□□□ 0.6
CPSF7-205ENST00000439958 EXOC6BQ9Y2D4 811 aa18.81■□□□□ 0.6
CPSF7-205ENST00000439958 USP54Q70EL1 1684 aa18.81■□□□□ 0.6
CPSF7-205ENST00000439958 GNAI2P04899 355 aa18.81■□□□□ 0.6
CPSF7-205ENST00000439958 DNAAF4Q8WXU2 420 aa18.81■□□□□ 0.6
CPSF7-205ENST00000439958 CHD1LQ86WJ1 897 aa18.8■□□□□ 0.6
CPSF7-205ENST00000439958 FMNL2Q96PY5 1086 aa18.8■□□□□ 0.6
CPSF7-205ENST00000439958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.8■□□□□ 0.63e-9■■□□□ 13.7
CPSF7-205ENST00000439958 COL5A2P05997 1499 aaPredicted RBP18.8■□□□□ 0.6
CPSF7-205ENST00000439958 PHRF1Q9P1Y6 1649 aaKnown RBP18.8■□□□□ 0.6
CPSF7-205ENST00000439958 JARID2Q92833 1246 aaPredicted RBP18.8■□□□□ 0.6
CPSF7-205ENST00000439958 NGLY1Q96IV0 654 aa18.8■□□□□ 0.6
CPSF7-205ENST00000439958 CWF19L2Q2TBE0 894 aaKnown RBP18.8■□□□□ 0.6
CPSF7-205ENST00000439958 TMOD3Q9NYL9 352 aa18.8■□□□□ 0.6
CPSF7-205ENST00000439958 KDM6AO15550 1401 aaPredicted RBP18.8■□□□□ 0.6
CPSF7-205ENST00000439958 CHMP4AQ9BY43 222 aa18.79■□□□□ 0.6
CPSF7-205ENST00000439958 CEP85Q6P2H3 762 aa18.79■□□□□ 0.6
CPSF7-205ENST00000439958 DAXXQ9UER7 740 aaPredicted RBP18.78■□□□□ 0.6
CPSF7-205ENST00000439958 EXOC5O00471 708 aa18.78■□□□□ 0.6
CPSF7-205ENST00000439958 HMMRO75330 724 aa18.78■□□□□ 0.6
CPSF7-205ENST00000439958 SNRPA1P09661 255 aaKnown RBP18.78■□□□□ 0.6
CPSF7-205ENST00000439958 GNAI3P08754 354 aa18.78■□□□□ 0.6
CPSF7-205ENST00000439958 COPS6Q7L5N1 327 aa18.78■□□□□ 0.6
CPSF7-205ENST00000439958 SMC5Q8IY18 1101 aa18.78■□□□□ 0.6
CPSF7-205ENST00000439958 XAGE3Q8WTP9 111 aa18.78■□□□□ 0.6
CPSF7-205ENST00000439958 C8orf34Q49A92 452 aa18.77■□□□□ 0.6
CPSF7-205ENST00000439958 ACSBG1Q96GR2 724 aa18.77■□□□□ 0.6
CPSF7-205ENST00000439958 C16orf71Q8IYS4 520 aaPredicted RBP18.77■□□□□ 0.6
CPSF7-205ENST00000439958 DDX58O95786 925 aaKnown RBP18.77■□□□□ 0.59
CPSF7-205ENST00000439958 OS9Q13438 667 aaPredicted RBP18.77■□□□□ 0.59
CPSF7-205ENST00000439958 GCC1Q96CN9 775 aa18.76■□□□□ 0.59
CPSF7-205ENST00000439958 RGS12O14924 1447 aa18.76■□□□□ 0.59
CPSF7-205ENST00000439958 NCAPD2Q15021 1401 aa18.76■□□□□ 0.59
CPSF7-205ENST00000439958 NBPF7P0C2Y1 421 aaPredicted RBP18.76■□□□□ 0.59
CPSF7-205ENST00000439958 MFAP1P55081 439 aaKnown RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms