RNA–Protein interactions for RNA: ENST00000438462.1

RTN4-211, Transcript of reticulon 4, humanhuman

TSL 5

Gene RTN4, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-211ENST00000438462 DEFB115Q30KQ5 88 aa16.65■□□□□ 0.26
RTN4-211ENST00000438462 CASP8AP2Q9UKL3 1982 aa16.65■□□□□ 0.26
RTN4-211ENST00000438462 LMNB1P20700 586 aa16.64■□□□□ 0.25
RTN4-211ENST00000438462 ANKRD24Q8TF21 1146 aa16.63■□□□□ 0.25
RTN4-211ENST00000438462 FAM208AQ9UK61 1670 aaKnown RBP16.62■□□□□ 0.25
RTN4-211ENST00000438462 ADAMTS7Q9UKP4 1686 aa16.6■□□□□ 0.25
RTN4-211ENST00000438462 GNPATO15228 680 aa16.58■□□□□ 0.24
RTN4-211ENST00000438462 SRPK2P78362 688 aaKnown RBP16.58■□□□□ 0.24
RTN4-211ENST00000438462 DPY19L2Q6NUT2 758 aa16.58■□□□□ 0.24
RTN4-211ENST00000438462 MAP2P11137 1827 aaKnown RBP16.58■□□□□ 0.24
RTN4-211ENST00000438462 FXR1P51114 621 aaKnown RBP eCLIP16.57■□□□□ 0.249e-8■■■■□ 20
RTN4-211ENST00000438462 LDHDQ86WU2 507 aa16.57■□□□□ 0.24
RTN4-211ENST00000438462 LINC00116Q8NCU8 138 aa16.57■□□□□ 0.24
RTN4-211ENST00000438462 ITGBL1O95965 494 aaPredicted RBP16.56■□□□□ 0.24
RTN4-211ENST00000438462 CHRNA5P30532 468 aa16.56■□□□□ 0.24
RTN4-211ENST00000438462 ABT1Q9ULW3 272 aaKnown RBP16.56■□□□□ 0.24
RTN4-211ENST00000438462 PARP3Q9Y6F1 533 aa16.56■□□□□ 0.24
RTN4-211ENST00000438462 MEGF6O75095 1541 aa16.55■□□□□ 0.24
RTN4-211ENST00000438462 NLGN1Q8N2Q7 840 aa16.55■□□□□ 0.24
RTN4-211ENST00000438462 NBPF15Q8N660 670 aa16.55■□□□□ 0.24
RTN4-211ENST00000438462 CABP2Q9NPB3 220 aa16.55■□□□□ 0.24
RTN4-211ENST00000438462 DICER1Q9UPY3 1922 aaKnown RBP16.55■□□□□ 0.24
RTN4-211ENST00000438462 ITGB4P16144 1822 aa16.54■□□□□ 0.24
RTN4-211ENST00000438462 TTC21BQ7Z4L5 1316 aa16.54■□□□□ 0.24
RTN4-211ENST00000438462 TMF1P82094 1093 aa16.54■□□□□ 0.24
RTN4-211ENST00000438462 GRM1Q13255 1194 aa16.54■□□□□ 0.24
RTN4-211ENST00000438462 CAPNS2Q96L46 248 aa16.54■□□□□ 0.24
RTN4-211ENST00000438462 CABP1Q9NZU7 370 aa16.54■□□□□ 0.24
RTN4-211ENST00000438462 PAXIP1Q6ZW49 1069 aaPredicted RBP16.53■□□□□ 0.24
RTN4-211ENST00000438462 ZCRB1Q8TBF4 217 aaKnown RBP16.53■□□□□ 0.24
RTN4-211ENST00000438462 ADAMTSL1Q8N6G6 1762 aa16.52■□□□□ 0.24
RTN4-211ENST00000438462 MPRIPQ6WCQ1 1025 aa16.51■□□□□ 0.23
RTN4-211ENST00000438462 GPR101Q96P66 508 aaPredicted RBP16.51■□□□□ 0.23
RTN4-211ENST00000438462 SCN4AP35499 1836 aa16.51■□□□□ 0.23
RTN4-211ENST00000438462 RGPD2P0DJD1 1756 aa16.51■□□□□ 0.23
RTN4-211ENST00000438462 DLEC1Q9Y238 1755 aa16.51■□□□□ 0.23
RTN4-211ENST00000438462 NFKBIEO00221 500 aa16.49■□□□□ 0.23
RTN4-211ENST00000438462 ECE1P42892 770 aa16.49■□□□□ 0.23
RTN4-211ENST00000438462 CYP4F22Q6NT55 531 aa16.49■□□□□ 0.23
RTN4-211ENST00000438462 SMARCC1Q92922 1105 aaPredicted RBP16.49■□□□□ 0.23
RTN4-211ENST00000438462 TTC21AQ8NDW8 1320 aa16.48■□□□□ 0.23
RTN4-211ENST00000438462 CA12O43570 354 aa16.48■□□□□ 0.23
RTN4-211ENST00000438462 DDNO94850 711 aaPredicted RBP16.48■□□□□ 0.23
RTN4-211ENST00000438462 GYS1P13807 737 aa16.48■□□□□ 0.23
RTN4-211ENST00000438462 SLC17A8Q8NDX2 589 aa16.48■□□□□ 0.23
RTN4-211ENST00000438462 PITPNM2Q9BZ72 1349 aa16.47■□□□□ 0.23
RTN4-211ENST00000438462 LOC105371045A0A1W2PR82 267 aa16.46■□□□□ 0.23
RTN4-211ENST00000438462 EAPPQ56P03 285 aaPredicted RBP16.46■□□□□ 0.23
RTN4-211ENST00000438462 LTV1Q96GA3 475 aaPredicted RBP16.46■□□□□ 0.23
RTN4-211ENST00000438462 TAF1DQ9H5J8 278 aaPredicted RBP16.46■□□□□ 0.23
RTN4-211ENST00000438462 LOC102724428A0A0B4J2F2 783 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 IQCA1LA6NCM1 817 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 AOC2O75106 756 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 SIK1P57059 783 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 ITPK1Q13572 414 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 ERFEQ4G0M1 354 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 TRAPPC3LQ5T215 181 aa16.45■□□□□ 0.22
RTN4-211ENST00000438462 NBPF1Q3BBV0 1214 aa16.44■□□□□ 0.22
RTN4-211ENST00000438462 CLEC11AQ9Y240 323 aa16.43■□□□□ 0.22
RTN4-211ENST00000438462 KDM2AQ9Y2K7 1162 aa16.43■□□□□ 0.22
RTN4-211ENST00000438462 MAP1SQ66K74 1059 aaPredicted RBP16.42■□□□□ 0.22
RTN4-211ENST00000438462 RTCBQ9Y3I0 505 aaKnown RBP16.42■□□□□ 0.22
RTN4-211ENST00000438462 MAP2K2P36507 400 aa16.41■□□□□ 0.22
RTN4-211ENST00000438462 DDR1Q08345 913 aa16.41■□□□□ 0.22
RTN4-211ENST00000438462 CNTROBQ8N137 903 aa16.41■□□□□ 0.22
RTN4-211ENST00000438462 ARHGEF1Q92888 912 aaKnown RBP16.41■□□□□ 0.22
RTN4-211ENST00000438462 MPHOSPH9Q99550 1183 aa16.41■□□□□ 0.22
RTN4-211ENST00000438462 MON2Q7Z3U7 1717 aa16.41■□□□□ 0.22
RTN4-211ENST00000438462 FER1L6Q2WGJ9 1857 aa16.41■□□□□ 0.22
RTN4-211ENST00000438462 SZT2Q5T011 3432 aa16.4■□□□□ 0.22
RTN4-211ENST00000438462 ATP6V1AP38606 617 aa16.39■□□□□ 0.21
RTN4-211ENST00000438462 USP31Q70CQ4 1352 aa16.38■□□□□ 0.21
RTN4-211ENST00000438462 CUL9Q8IWT3 2517 aa16.38■□□□□ 0.21
RTN4-211ENST00000438462 RFC4P35249 363 aa16.38■□□□□ 0.21
RTN4-211ENST00000438462 PIGBQ92521 554 aa16.38■□□□□ 0.21
RTN4-211ENST00000438462 L3MBTL3Q96JM7 780 aaPredicted RBP16.38■□□□□ 0.21
RTN4-211ENST00000438462 DDX21Q9NR30 783 aaKnown RBP eCLIP16.38■□□□□ 0.214e-6■■■■□ 21
RTN4-211ENST00000438462 COL5A3P25940 1745 aaPredicted RBP16.38■□□□□ 0.21
RTN4-211ENST00000438462 TRPM7Q96QT4 1865 aa16.37■□□□□ 0.21
RTN4-211ENST00000438462 ADRA2BP18089 450 aa16.37■□□□□ 0.21
RTN4-211ENST00000438462 BRPF1P55201 1214 aaPredicted RBP16.37■□□□□ 0.21
RTN4-211ENST00000438462 PCDH11XQ9BZA7 1347 aa16.37■□□□□ 0.21
RTN4-211ENST00000438462 PCDH11YQ9BZA8 1340 aa16.37■□□□□ 0.21
RTN4-211ENST00000438462 TTLL6Q8N841 843 aa16.36■□□□□ 0.21
RTN4-211ENST00000438462 ZNF692Q9BU19 519 aaPredicted RBP16.36■□□□□ 0.21
RTN4-211ENST00000438462 A0A0C4DFX4 3053 aa16.36■□□□□ 0.21
RTN4-211ENST00000438462 AFDNP55196 1824 aaKnown RBP16.35■□□□□ 0.21
RTN4-211ENST00000438462 DCAF11Q8TEB1 546 aa16.35■□□□□ 0.21
RTN4-211ENST00000438462 KTN1Q86UP2 1357 aaKnown RBP16.35■□□□□ 0.21
RTN4-211ENST00000438462 FMR1Q06787 632 aaKnown RBP eCLIP16.34■□□□□ 0.215e-11■□□□□ 8.4
RTN4-211ENST00000438462 IP6K1Q92551 441 aa16.34■□□□□ 0.21
RTN4-211ENST00000438462 SMG6Q86US8 1419 aaKnown RBP16.34■□□□□ 0.21
RTN4-211ENST00000438462 CD163L1Q9NR16 1453 aa16.34■□□□□ 0.21
RTN4-211ENST00000438462 EPHX2P34913 555 aa16.33■□□□□ 0.2
RTN4-211ENST00000438462 FKBP8Q14318 412 aa16.33■□□□□ 0.2
RTN4-211ENST00000438462 CIAPIN1Q6FI81 312 aa16.33■□□□□ 0.2
RTN4-211ENST00000438462 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.33■□□□□ 0.21e-7■■■□□ 14.8
RTN4-211ENST00000438462 HACL1Q9UJ83 578 aa16.33■□□□□ 0.2
RTN4-211ENST00000438462 TLL2Q9Y6L7 1015 aa16.33■□□□□ 0.2
RTN4-211ENST00000438462 CGNL1Q0VF96 1302 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms