RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LOC102724428A0A0B4J2F2 783 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 PHF14O94880 888 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 PHKG2P15735 406 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 SIK1P57059 783 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 ITPK1Q13572 414 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.5■□□□□ 0.23
PTPRF-208ENST00000437607 ASAP1Q9ULH1 1129 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 ATP10DQ9P241 1426 aa16.5■□□□□ 0.23
PTPRF-208ENST00000437607 HMGB2P26583 209 aaKnown RBP16.49■□□□□ 0.23
PTPRF-208ENST00000437607 ADCY9O60503 1353 aa16.49■□□□□ 0.23
PTPRF-208ENST00000437607 SCN11AQ9UI33 1791 aa16.49■□□□□ 0.23
PTPRF-208ENST00000437607 CICQ96RK0 1608 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-208ENST00000437607 SSFA2P28290 1259 aa16.48■□□□□ 0.23
PTPRF-208ENST00000437607 EIF4A2Q14240 407 aaKnown RBP16.48■□□□□ 0.23
PTPRF-208ENST00000437607 TMOD3Q9NYL9 352 aa16.48■□□□□ 0.23
PTPRF-208ENST00000437607 IFNL2Q8IZJ0 200 aa16.47■□□□□ 0.23
PTPRF-208ENST00000437607 ATG3Q9NT62 314 aa16.47■□□□□ 0.23
PTPRF-208ENST00000437607 KDRP35968 1356 aa16.47■□□□□ 0.23
PTPRF-208ENST00000437607 IGSF1Q8N6C5 1336 aa16.46■□□□□ 0.23
PTPRF-208ENST00000437607 TJP1Q07157 1748 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 ARFGEF1Q9Y6D6 1849 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 ATP6V1AP38606 617 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 TNNT2P45379 298 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-208ENST00000437607 SLC4A9Q96Q91 983 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 PANK3Q9H999 370 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 WWC3Q9ULE0 1092 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 PLEKHG2Q9H7P9 1386 aa16.45■□□□□ 0.22
PTPRF-208ENST00000437607 GNPATO15228 680 aa16.44■□□□□ 0.22
PTPRF-208ENST00000437607 KDM6AO15550 1401 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-208ENST00000437607 ANP32CO43423 234 aa16.42■□□□□ 0.22
PTPRF-208ENST00000437607 KNSTRNQ9Y448 316 aa16.42■□□□□ 0.22
PTPRF-208ENST00000437607 ADAMTS7Q9UKP4 1686 aa16.42■□□□□ 0.22
PTPRF-208ENST00000437607 PXDNLA1KZ92 1463 aa16.42■□□□□ 0.22
PTPRF-208ENST00000437607 SBF1O95248 1867 aa16.4■□□□□ 0.22
PTPRF-208ENST00000437607 ERVV-2B6SEH9 535 aa16.39■□□□□ 0.21
PTPRF-208ENST00000437607 MMP10P09238 476 aa16.39■□□□□ 0.21
PTPRF-208ENST00000437607 GPBP1L1Q9HC44 474 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-208ENST00000437607 AFDNP55196 1824 aaKnown RBP16.38■□□□□ 0.21
PTPRF-208ENST00000437607 C10orf71Q711Q0 1435 aa16.38■□□□□ 0.21
PTPRF-208ENST00000437607 ZNF526Q8TF50 670 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-208ENST00000437607 DCAF5Q96JK2 942 aa16.38■□□□□ 0.21
PTPRF-208ENST00000437607 RBM42Q9BTD8 480 aaKnown RBP16.38■□□□□ 0.21
PTPRF-208ENST00000437607 TRAPPC3LQ5T215 181 aa16.37■□□□□ 0.21
PTPRF-208ENST00000437607 RC3H1Q5TC82 1133 aaKnown RBP16.37■□□□□ 0.21
PTPRF-208ENST00000437607 AEBP1Q8IUX7 1158 aa16.37■□□□□ 0.21
PTPRF-208ENST00000437607 ARHGEF1Q92888 912 aaKnown RBP16.37■□□□□ 0.21
PTPRF-208ENST00000437607 RTCBQ9Y3I0 505 aaKnown RBP16.37■□□□□ 0.21
PTPRF-208ENST00000437607 NPC1L1Q9UHC9 1359 aa16.37■□□□□ 0.21
PTPRF-208ENST00000437607 PLEKHO1Q53GL0 409 aaPredicted RBP16.36■□□□□ 0.21
PTPRF-208ENST00000437607 ZNF530Q6P9A1 599 aaPredicted RBP16.36■□□□□ 0.21
PTPRF-208ENST00000437607 CNTNAP4Q9C0A0 1308 aa16.36■□□□□ 0.21
PTPRF-208ENST00000437607 PER1O15534 1290 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-208ENST00000437607 HSP90AB1P08238 724 aaKnown RBP16.35■□□□□ 0.21
PTPRF-208ENST00000437607 GYS1P13807 737 aa16.35■□□□□ 0.21
PTPRF-208ENST00000437607 CCDC88AQ3V6T2 1871 aa16.35■□□□□ 0.21
PTPRF-208ENST00000437607 RPS6KA4O75676 772 aa16.34■□□□□ 0.21
PTPRF-208ENST00000437607 CNGB1Q14028 1251 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-208ENST00000437607 NLGN1Q8N2Q7 840 aa16.34■□□□□ 0.21
PTPRF-208ENST00000437607 A0A0G2JLW4 131 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 KIF3CO14782 793 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 ADRA2BP18089 450 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 TGFB2P61812 414 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 AMOTQ4VCS5 1084 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 UBR2Q8IWV8 1755 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 DLEC1Q9Y238 1755 aa16.33■□□□□ 0.2
PTPRF-208ENST00000437607 CABP4P57796 275 aa16.32■□□□□ 0.2
PTPRF-208ENST00000437607 AMER1Q5JTC6 1135 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-208ENST00000437607 CC2D1BQ5T0F9 858 aaKnown RBP16.32■□□□□ 0.2
PTPRF-208ENST00000437607 PRKRIP1Q9H875 184 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-208ENST00000437607 NRXN2Q9P2S2 1712 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 PTCD1O75127 700 aaKnown RBP16.31■□□□□ 0.2
PTPRF-208ENST00000437607 DPEP1P16444 411 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 HSPA6P17066 643 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 IL13P35225 146 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 RFC4P35249 363 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 MTHFSP49914 203 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 SULT6B1Q6IMI4 303 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 MORC1Q86VD1 984 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 MIER1Q8N108 512 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 NFATC2IPQ8NCF5 419 aa16.31■□□□□ 0.2
PTPRF-208ENST00000437607 KCNA3P22001 575 aa16.3■□□□□ 0.2
PTPRF-208ENST00000437607 RALBP1Q15311 655 aa16.3■□□□□ 0.2
PTPRF-208ENST00000437607 BCS1LQ9Y276 419 aa16.3■□□□□ 0.2
PTPRF-208ENST00000437607 SIPA1L3O60292 1781 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-208ENST00000437607 MRC1P22897 1456 aa16.29■□□□□ 0.2
PTPRF-208ENST00000437607 CRKLP46109 303 aaKnown RBP16.29■□□□□ 0.2
PTPRF-208ENST00000437607 C1orf141Q5JVX7 400 aa16.29■□□□□ 0.2
PTPRF-208ENST00000437607 CCDC87Q9NVE4 849 aa16.29■□□□□ 0.2
PTPRF-208ENST00000437607 SRP68Q9UHB9 627 aaKnown RBP16.29■□□□□ 0.2
PTPRF-208ENST00000437607 MYBBP1AQ9BQG0 1328 aaKnown RBP16.28■□□□□ 0.2
PTPRF-208ENST00000437607 PARP3Q9Y6F1 533 aa16.28■□□□□ 0.2
PTPRF-208ENST00000437607 KCPQ6ZWJ8 1503 aa16.28■□□□□ 0.2
PTPRF-208ENST00000437607 WDR90Q96KV7 1748 aa16.28■□□□□ 0.2
PTPRF-208ENST00000437607 USP42Q9H9J4 1324 aaKnown RBP16.27■□□□□ 0.2
PTPRF-208ENST00000437607 DDR1Q08345 913 aa16.27■□□□□ 0.2
PTPRF-208ENST00000437607 FKBP8Q14318 412 aa16.27■□□□□ 0.2
PTPRF-208ENST00000437607 INTS5Q6P9B9 1019 aaKnown RBP16.27■□□□□ 0.2
PTPRF-208ENST00000437607 ARHGAP27Q6ZUM4 889 aa16.26■□□□□ 0.19
PTPRF-208ENST00000437607 ANKRD31Q8N7Z5 1873 aa16.25■□□□□ 0.19
PTPRF-208ENST00000437607 TNRC6CQ9HCJ0 1690 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms