RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 CCDC39Q9UFE4 941 aa18.56■□□□□ 0.56
C9orf3-204ENST00000424143 LRRC37A3O60309 1634 aa18.55■□□□□ 0.56
C9orf3-204ENST00000424143 PLEKHG5O94827 1062 aa18.55■□□□□ 0.56
C9orf3-204ENST00000424143 SLC4A2P04920 1241 aa18.55■□□□□ 0.56
C9orf3-204ENST00000424143 PRIM1P49642 420 aaKnown RBP18.55■□□□□ 0.56
C9orf3-204ENST00000424143 ZGPATQ8N5A5 531 aaKnown RBP18.55■□□□□ 0.56
C9orf3-204ENST00000424143 ZKSCAN5Q9Y2L8 839 aa18.55■□□□□ 0.56
C9orf3-204ENST00000424143 PRR36Q9H6K5 1346 aa18.54■□□□□ 0.56
C9orf3-204ENST00000424143 USP6P35125 1406 aa18.54■□□□□ 0.56
C9orf3-204ENST00000424143 ATP8B2P98198 1209 aa18.54■□□□□ 0.56
C9orf3-204ENST00000424143 PKP1Q13835 747 aa18.54■□□□□ 0.56
C9orf3-204ENST00000424143 TTC21AQ8NDW8 1320 aa18.54■□□□□ 0.56
C9orf3-204ENST00000424143 FMN2Q9NZ56 1722 aa18.53■□□□□ 0.56
C9orf3-204ENST00000424143 SMARCA5O60264 1052 aaPredicted RBP18.53■□□□□ 0.56
C9orf3-204ENST00000424143 UVSSAQ2YD98 709 aa18.53■□□□□ 0.56
C9orf3-204ENST00000424143 AEBP1Q8IUX7 1158 aa18.53■□□□□ 0.56
C9orf3-204ENST00000424143 PHF14O94880 888 aa18.52■□□□□ 0.56
C9orf3-204ENST00000424143 NCLP19338 710 aaKnown RBP18.52■□□□□ 0.56
C9orf3-204ENST00000424143 TMEM87AQ8NBN3 555 aa18.52■□□□□ 0.56
C9orf3-204ENST00000424143 LRRCC1Q9C099 1032 aa18.52■□□□□ 0.56
C9orf3-204ENST00000424143 XRN1Q8IZH2 1706 aaKnown RBP18.52■□□□□ 0.56
C9orf3-204ENST00000424143 PTPRUQ92729 1446 aa18.52■□□□□ 0.56
C9orf3-204ENST00000424143 NEK4P51957 841 aa18.52■□□□□ 0.55
C9orf3-204ENST00000424143 TXNDC2Q86VQ3 553 aa18.52■□□□□ 0.55
C9orf3-204ENST00000424143 FAM184AQ8NB25 1140 aa18.52■□□□□ 0.55
C9orf3-204ENST00000424143 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.52■□□□□ 0.55
C9orf3-204ENST00000424143 TMEM63CQ9P1W3 806 aa18.52■□□□□ 0.55
C9orf3-204ENST00000424143 CHMLP26374 656 aa18.51■□□□□ 0.55
C9orf3-204ENST00000424143 MTERF4Q7Z6M4 381 aaKnown RBP18.51■□□□□ 0.55
C9orf3-204ENST00000424143 SBNO1A3KN83 1393 aa18.5■□□□□ 0.55
C9orf3-204ENST00000424143 MCM10Q7L590 875 aa18.5■□□□□ 0.55
C9orf3-204ENST00000424143 FAM208AQ9UK61 1670 aaKnown RBP18.5■□□□□ 0.55
C9orf3-204ENST00000424143 MX1P20591 662 aa18.49■□□□□ 0.55
C9orf3-204ENST00000424143 KRT24Q2M2I5 525 aa18.49■□□□□ 0.55
C9orf3-204ENST00000424143 RAB11FIP3O75154 756 aa18.49■□□□□ 0.55
C9orf3-204ENST00000424143 LETM1O95202 739 aaPredicted RBP18.49■□□□□ 0.55
C9orf3-204ENST00000424143 RTF1Q92541 710 aaKnown RBP18.49■□□□□ 0.55
C9orf3-204ENST00000424143 DIP2BQ9P265 1576 aa18.48■□□□□ 0.55
C9orf3-204ENST00000424143 WDR33Q9C0J8 1336 aaKnown RBP18.48■□□□□ 0.55
C9orf3-204ENST00000424143 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.48■□□□□ 0.55
C9orf3-204ENST00000424143 FLT4P35916 1363 aa18.48■□□□□ 0.55
C9orf3-204ENST00000424143 CCDC30Q5VVM6 783 aa18.48■□□□□ 0.55
C9orf3-204ENST00000424143 STK31Q9BXU1 1019 aa18.48■□□□□ 0.55
C9orf3-204ENST00000424143 TSPYL4Q9UJ04 414 aa18.48■□□□□ 0.55
C9orf3-204ENST00000424143 ACEP12821 1306 aa18.48■□□□□ 0.55
C9orf3-204ENST00000424143 TSPY26PQ9H489 355 aa18.47■□□□□ 0.55
C9orf3-204ENST00000424143 IGSF1Q8N6C5 1336 aa18.47■□□□□ 0.55
C9orf3-204ENST00000424143 ADAMTS13Q76LX8 1427 aa18.46■□□□□ 0.55
C9orf3-204ENST00000424143 CHMP4AQ9BY43 222 aa18.46■□□□□ 0.55
C9orf3-204ENST00000424143 USP54Q70EL1 1684 aa18.46■□□□□ 0.55
C9orf3-204ENST00000424143 ROBO2Q9HCK4 1378 aa18.46■□□□□ 0.55
C9orf3-204ENST00000424143 TMEM2Q9UHN6 1383 aa18.46■□□□□ 0.55
C9orf3-204ENST00000424143 DYNC1I1O14576 645 aa18.45■□□□□ 0.54
C9orf3-204ENST00000424143 G2E3Q7L622 706 aa18.45■□□□□ 0.54
C9orf3-204ENST00000424143 RBM27Q9P2N5 1060 aaKnown RBP18.45■□□□□ 0.54
C9orf3-204ENST00000424143 UBR1Q8IWV7 1749 aa18.45■□□□□ 0.54
C9orf3-204ENST00000424143 SYCE3A1L190 88 aa18.45■□□□□ 0.54
C9orf3-204ENST00000424143 HSPA4P34932 840 aa18.45■□□□□ 0.54
C9orf3-204ENST00000424143 HSP90AB2PQ58FF8 381 aa18.45■□□□□ 0.54
C9orf3-204ENST00000424143 MAP3K19Q56UN5 1328 aa18.44■□□□□ 0.54
C9orf3-204ENST00000424143 RIMS1Q86UR5 1692 aaKnown RBP18.44■□□□□ 0.54
C9orf3-204ENST00000424143 MTHFSDQ2M296 383 aaKnown RBP18.44■□□□□ 0.54
C9orf3-204ENST00000424143 SSH3Q8TE77 659 aa18.44■□□□□ 0.54
C9orf3-204ENST00000424143 SENP3Q9H4L4 574 aaPredicted RBP18.44■□□□□ 0.54
C9orf3-204ENST00000424143 PLEKHG1Q9ULL1 1385 aa18.44■□□□□ 0.54
C9orf3-204ENST00000424143 PDIA4P13667 645 aaKnown RBP18.43■□□□□ 0.54
C9orf3-204ENST00000424143 FLIIQ13045 1269 aa18.43■□□□□ 0.54
C9orf3-204ENST00000424143 NCKAP5LQ9HCH0 1330 aa18.43■□□□□ 0.54
C9orf3-204ENST00000424143 PLPPR3Q6T4P5 718 aa18.42■□□□□ 0.54
C9orf3-204ENST00000424143 SASS6Q6UVJ0 657 aa18.42■□□□□ 0.54
C9orf3-204ENST00000424143 DIP2AQ14689 1571 aa18.42■□□□□ 0.54
C9orf3-204ENST00000424143 CRYBG1Q9Y4K1 1723 aa18.42■□□□□ 0.54
C9orf3-204ENST00000424143 NSFL1CQ9UNZ2 370 aaKnown RBP18.41■□□□□ 0.54
C9orf3-204ENST00000424143 USP42Q9H9J4 1324 aaKnown RBP18.41■□□□□ 0.54
C9orf3-204ENST00000424143 TNRQ92752 1358 aa18.41■□□□□ 0.54
C9orf3-204ENST00000424143 POLA2Q14181 598 aa18.41■□□□□ 0.54
C9orf3-204ENST00000424143 PALD1Q9ULE6 856 aa18.41■□□□□ 0.54
C9orf3-204ENST00000424143 EXOC6BQ9Y2D4 811 aa18.41■□□□□ 0.54
C9orf3-204ENST00000424143 RPAP1Q9BWH6 1393 aaPredicted RBP18.4■□□□□ 0.54
C9orf3-204ENST00000424143 F6X3S4 739 aa18.4■□□□□ 0.54
C9orf3-204ENST00000424143 APBB1O00213 710 aa18.4■□□□□ 0.54
C9orf3-204ENST00000424143 SLC4A10Q6U841 1118 aa18.4■□□□□ 0.54
C9orf3-204ENST00000424143 RAD50Q92878 1312 aa18.39■□□□□ 0.53
C9orf3-204ENST00000424143 ANO2Q9NQ90 1003 aa18.39■□□□□ 0.53
C9orf3-204ENST00000424143 ATP6V1DQ9Y5K8 247 aa18.39■□□□□ 0.53
C9orf3-204ENST00000424143 MAP3K5Q99683 1374 aa18.39■□□□□ 0.53
C9orf3-204ENST00000424143 PNMA6EA0A0J9YXQ4 647 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 CCDC183Q5T5S1 534 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 R3HCC1Q9Y3T6 440 aaKnown RBP18.38■□□□□ 0.53
C9orf3-204ENST00000424143 GNAT3A8MTJ3 354 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 SGSM2O43147 1006 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 HOXB7P09629 217 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 HSP90AB4PQ58FF6 505 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 TTC14Q96N46 770 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 USP44Q9H0E7 712 aa18.38■□□□□ 0.53
C9orf3-204ENST00000424143 KIAA2012Q0VF49 1180 aa18.37■□□□□ 0.53
C9orf3-204ENST00000424143 KCNB2Q92953 911 aa18.37■□□□□ 0.53
C9orf3-204ENST00000424143 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-204ENST00000424143 CEP170BQ9Y4F5 1589 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-204ENST00000424143 TRIM6-TRIM34B2RNG4 842 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms