RNA–Protein interactions for RNA: ENST00000423161.3

SREBF1-206, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-206ENST00000423161 ZNF530Q6P9A1 599 aaPredicted RBP25.23■■□□□ 1.63
SREBF1-206ENST00000423161 SMIM5Q71RC9 77 aa25.23■■□□□ 1.63
SREBF1-206ENST00000423161 SSFA2P28290 1259 aa25.22■■□□□ 1.63
SREBF1-206ENST00000423161 AMOTQ4VCS5 1084 aa25.22■■□□□ 1.63
SREBF1-206ENST00000423161 AEBP1Q8IUX7 1158 aa25.22■■□□□ 1.63
SREBF1-206ENST00000423161 DCAF5Q96JK2 942 aa25.22■■□□□ 1.63
SREBF1-206ENST00000423161 KDM6AO15550 1401 aaPredicted RBP25.21■■□□□ 1.63
SREBF1-206ENST00000423161 COL5A3P25940 1745 aaPredicted RBP25.21■■□□□ 1.63
SREBF1-206ENST00000423161 ERVV-2B6SEH9 535 aa25.21■■□□□ 1.63
SREBF1-206ENST00000423161 AMER1Q5JTC6 1135 aaPredicted RBP25.21■■□□□ 1.63
SREBF1-206ENST00000423161 KDRP35968 1356 aa25.2■■□□□ 1.63
SREBF1-206ENST00000423161 SCN11AQ9UI33 1791 aa25.19■■□□□ 1.62
SREBF1-206ENST00000423161 GNPATO15228 680 aa25.19■■□□□ 1.62
SREBF1-206ENST00000423161 GOLGB1Q14789 3259 aaKnown RBP25.19■■□□□ 1.62
SREBF1-206ENST00000423161 VIRMAQ69YN4 1812 aaKnown RBP25.19■■□□□ 1.62
SREBF1-206ENST00000423161 SULT6B1Q6IMI4 303 aa25.18■■□□□ 1.62
SREBF1-206ENST00000423161 IL13P35225 146 aa25.17■■□□□ 1.62
SREBF1-206ENST00000423161 C1orf141Q5JVX7 400 aa25.17■■□□□ 1.62
SREBF1-206ENST00000423161 CD2APQ9Y5K6 639 aa25.17■■□□□ 1.62
SREBF1-206ENST00000423161 YBX3P16989 372 aaKnown RBP eCLIP25.16■■□□□ 1.62
SREBF1-206ENST00000423161 CABP4P57796 275 aa25.16■■□□□ 1.62
SREBF1-206ENST00000423161 RBM42Q9BTD8 480 aaKnown RBP25.16■■□□□ 1.62
SREBF1-206ENST00000423161 MTHFSP49914 203 aa25.14■■□□□ 1.62
SREBF1-206ENST00000423161 SLC4A9Q96Q91 983 aa25.14■■□□□ 1.62
SREBF1-206ENST00000423161 MYH14Q7Z406 1995 aaKnown RBP25.14■■□□□ 1.61
SREBF1-206ENST00000423161 GRIN3BO60391 1043 aa25.13■■□□□ 1.61
SREBF1-206ENST00000423161 RTCBQ9Y3I0 505 aaKnown RBP25.11■■□□□ 1.61
SREBF1-206ENST00000423161 C4AP0C0L4 1744 aa25.11■■□□□ 1.61
SREBF1-206ENST00000423161 PER1O15534 1290 aaPredicted RBP25.1■■□□□ 1.61
SREBF1-206ENST00000423161 TJP1Q07157 1748 aa25.09■■□□□ 1.61
SREBF1-206ENST00000423161 CC2D1BQ5T0F9 858 aaKnown RBP25.09■■□□□ 1.61
SREBF1-206ENST00000423161 CNTNAP4Q9C0A0 1308 aa25.09■■□□□ 1.61
SREBF1-206ENST00000423161 CICQ96RK0 1608 aaPredicted RBP25.08■■□□□ 1.61
SREBF1-206ENST00000423161 KIF13BQ9NQT8 1826 aa25.08■■□□□ 1.61
SREBF1-206ENST00000423161 RC3H1Q5TC82 1133 aaKnown RBP25.08■■□□□ 1.61
SREBF1-206ENST00000423161 NFATC2IPQ8NCF5 419 aa25.08■■□□□ 1.61
SREBF1-206ENST00000423161 PTCD1O75127 700 aaKnown RBP25.07■■□□□ 1.6
SREBF1-206ENST00000423161 TRAPPC3LQ5T215 181 aa25.07■■□□□ 1.6
SREBF1-206ENST00000423161 HMOX1P09601 288 aa25.06■■□□□ 1.6
SREBF1-206ENST00000423161 MMP10P09238 476 aa25.05■■□□□ 1.6
SREBF1-206ENST00000423161 ADRA2BP18089 450 aa25.05■■□□□ 1.6
SREBF1-206ENST00000423161 AKAP4Q5JQC9 854 aa25.05■■□□□ 1.6
SREBF1-206ENST00000423161 RPS6KA4O75676 772 aa25.04■■□□□ 1.6
SREBF1-206ENST00000423161 ARHGEF1Q92888 912 aaKnown RBP25.04■■□□□ 1.6
SREBF1-206ENST00000423161 KIAA1551Q9HCM1 1747 aa25.03■■□□□ 1.6
SREBF1-206ENST00000423161 N4BP2Q86UW6 1770 aaPredicted RBP25.03■■□□□ 1.6
SREBF1-206ENST00000423161 DIAPH1O60610 1272 aaKnown RBP25.03■■□□□ 1.6
SREBF1-206ENST00000423161 MRC1P22897 1456 aa25.02■■□□□ 1.6
SREBF1-206ENST00000423161 ADAMTS7Q9UKP4 1686 aa25.02■■□□□ 1.6
SREBF1-206ENST00000423161 WWC3Q9ULE0 1092 aa25.02■■□□□ 1.6
SREBF1-206ENST00000423161 NPC1L1Q9UHC9 1359 aa25.02■■□□□ 1.6
SREBF1-206ENST00000423161 RFC4P35249 363 aa25.01■■□□□ 1.59
SREBF1-206ENST00000423161 CRKLP46109 303 aaKnown RBP25.01■■□□□ 1.59
SREBF1-206ENST00000423161 NLGN1Q8N2Q7 840 aa25.01■■□□□ 1.59
SREBF1-206ENST00000423161 CNGB1Q14028 1251 aaPredicted RBP25■■□□□ 1.59
SREBF1-206ENST00000423161 SLC52A2Q9HAB3 445 aa25■■□□□ 1.59
SREBF1-206ENST00000423161 COL3A1P02461 1466 aaPredicted RBP25■■□□□ 1.59
SREBF1-206ENST00000423161 GYS1P13807 737 aa24.99■■□□□ 1.59
SREBF1-206ENST00000423161 LGR6Q9HBX8 967 aa24.99■■□□□ 1.59
SREBF1-206ENST00000423161 RNMTO43148 476 aaKnown RBP24.98■■□□□ 1.59
SREBF1-206ENST00000423161 PXDNLA1KZ92 1463 aa24.97■■□□□ 1.59
SREBF1-206ENST00000423161 C10orf71Q711Q0 1435 aa24.97■■□□□ 1.59
SREBF1-206ENST00000423161 GIGYF1O75420 1035 aaPredicted RBP24.97■■□□□ 1.59
SREBF1-206ENST00000423161 C1QTNF8P60827 252 aa24.97■■□□□ 1.59
SREBF1-206ENST00000423161 MTHFSDQ2M296 383 aaKnown RBP24.97■■□□□ 1.59
SREBF1-206ENST00000423161 ATP10DQ9P241 1426 aa24.95■■□□□ 1.59
SREBF1-206ENST00000423161 UBR2Q8IWV8 1755 aa24.95■■□□□ 1.59
SREBF1-206ENST00000423161 BRCA1P38398 1863 aaKnown RBP24.95■■□□□ 1.58
SREBF1-206ENST00000423161 PARP3Q9Y6F1 533 aa24.94■■□□□ 1.58
SREBF1-206ENST00000423161 KCPQ6ZWJ8 1503 aa24.94■■□□□ 1.58
SREBF1-206ENST00000423161 SLC39A6Q13433 755 aa24.93■■□□□ 1.58
SREBF1-206ENST00000423161 DNAJC10Q8IXB1 793 aa24.93■■□□□ 1.58
SREBF1-206ENST00000423161 CCDC87Q9NVE4 849 aa24.93■■□□□ 1.58
SREBF1-206ENST00000423161 U2SURPO15042 1029 aaKnown RBP24.92■■□□□ 1.58
SREBF1-206ENST00000423161 SRP68Q9UHB9 627 aaKnown RBP24.92■■□□□ 1.58
SREBF1-206ENST00000423161 ADCY9O60503 1353 aa24.92■■□□□ 1.58
SREBF1-206ENST00000423161 USP42Q9H9J4 1324 aaKnown RBP24.91■■□□□ 1.58
SREBF1-206ENST00000423161 TGFB2P61812 414 aa24.91■■□□□ 1.58
SREBF1-206ENST00000423161 INTS5Q6P9B9 1019 aaKnown RBP24.91■■□□□ 1.58
SREBF1-206ENST00000423161 SIPA1L3O60292 1781 aaPredicted RBP24.9■■□□□ 1.58
SREBF1-206ENST00000423161 SENP3-EIF4A1A0A087X0R7 540 aa24.89■■□□□ 1.58
SREBF1-206ENST00000423161 A0A0G2JLW4 131 aa24.89■■□□□ 1.58
SREBF1-206ENST00000423161 FKBP8Q14318 412 aa24.88■■□□□ 1.57
SREBF1-206ENST00000423161 ARFGEF1Q9Y6D6 1849 aa24.88■■□□□ 1.57
SREBF1-206ENST00000423161 CYP19A1P11511 503 aaPredicted RBP24.87■■□□□ 1.57
SREBF1-206ENST00000423161 BCS1LQ9Y276 419 aa24.87■■□□□ 1.57
SREBF1-206ENST00000423161 SOS1Q07889 1333 aaPredicted RBP24.86■■□□□ 1.57
SREBF1-206ENST00000423161 DPEP1P16444 411 aa24.86■■□□□ 1.57
SREBF1-206ENST00000423161 GAS2L2Q8NHY3 880 aa24.86■■□□□ 1.57
SREBF1-206ENST00000423161 AFDNP55196 1824 aaKnown RBP24.85■■□□□ 1.57
SREBF1-206ENST00000423161 DDR1Q08345 913 aa24.85■■□□□ 1.57
SREBF1-206ENST00000423161 GPBP1L1Q9HC44 474 aaPredicted RBP24.85■■□□□ 1.57
SREBF1-206ENST00000423161 COL15A1P39059 1388 aa24.84■■□□□ 1.57
SREBF1-206ENST00000423161 ZPR1O75312 459 aa24.84■■□□□ 1.57
SREBF1-206ENST00000423161 VSIG10Q8N0Z9 540 aa24.84■■□□□ 1.57
SREBF1-206ENST00000423161 CFAP53Q96M91 514 aa24.84■■□□□ 1.57
SREBF1-206ENST00000423161 GNAT3A8MTJ3 354 aa24.83■■□□□ 1.57
SREBF1-206ENST00000423161 TTC5Q8N0Z6 440 aa24.83■■□□□ 1.57
SREBF1-206ENST00000423161 ZNF526Q8TF50 670 aaPredicted RBP24.83■■□□□ 1.57
SREBF1-206ENST00000423161 ZBTB1Q9Y2K1 713 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms