RNA–Protein interactions for RNA: ENST00000423161.3

SREBF1-206, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-206ENST00000423161 NISCHQ9Y2I1 1504 aa46.2■■■■■ 4.99
SREBF1-206ENST00000423161 CCDC180Q9P1Z9 1646 aa41.48■■■■■ 4.23
SREBF1-206ENST00000423161 ABCC9O60706 1549 aa41.25■■■■■ 4.19
SREBF1-206ENST00000423161 RB1CC1Q8TDY2 1594 aa39.38■■■■□ 3.89
SREBF1-206ENST00000423161 NACADO15069 1562 aa39.12■■■■□ 3.85
SREBF1-206ENST00000423161 DCAF8L2P0C7V8 631 aa38.87■■■■□ 3.81
SREBF1-206ENST00000423161 MYO15BQ96JP2 1530 aa38.61■■■■□ 3.77
SREBF1-206ENST00000423161 UNC13AQ9UPW8 1703 aa38.58■■■■□ 3.77
SREBF1-206ENST00000423161 DNAJC5BQ9UF47 199 aa38.49■■■■□ 3.75
SREBF1-206ENST00000423161 PABPN1Q86U42 306 aaKnown RBP eCLIP38.38■■■■□ 3.73
SREBF1-206ENST00000423161 ZCCHC6Q5VYS8 1495 aaKnown RBP38.34■■■■□ 3.73
SREBF1-206ENST00000423161 BICRAQ9NZM4 1560 aa38.21■■■■□ 3.71
SREBF1-206ENST00000423161 DCAF1Q9Y4B6 1507 aa38.17■■■■□ 3.7
SREBF1-206ENST00000423161 SCRIBQ14160 1630 aa37.78■■■■□ 3.64
SREBF1-206ENST00000423161 SHROOM4Q9ULL8 1493 aa37.71■■■■□ 3.63
SREBF1-206ENST00000423161 CC2D2AQ9P2K1 1620 aa37.31■■■■□ 3.56
SREBF1-206ENST00000423161 EIF4G1Q04637 1599 aaKnown RBP37.25■■■■□ 3.55
SREBF1-206ENST00000423161 CECR2Q9BXF3 1484 aa37.13■■■■□ 3.54
SREBF1-206ENST00000423161 NCAPD3P42695 1498 aa36.06■■■■□ 3.36
SREBF1-206ENST00000423161 SMARCA4P51532 1647 aa36.05■■■■□ 3.36
SREBF1-206ENST00000423161 ATAD2BQ9ULI0 1458 aa35.99■■■■□ 3.35
SREBF1-206ENST00000423161 SMARCA2P51531 1590 aa35.94■■■■□ 3.34
SREBF1-206ENST00000423161 BAZ1AQ9NRL2 1556 aaPredicted RBP35.88■■■■□ 3.33
SREBF1-206ENST00000423161 HMGXB3Q12766 1538 aa35.88■■■■□ 3.33
SREBF1-206ENST00000423161 PEG3Q9GZU2 1588 aa35.68■■■■□ 3.3
SREBF1-206ENST00000423161 BAZ1BQ9UIG0 1483 aaKnown RBP35.68■■■■□ 3.3
SREBF1-206ENST00000423161 ERCC6Q03468 1493 aa35.62■■■■□ 3.29
SREBF1-206ENST00000423161 MROH2BQ7Z745 1585 aa35.6■■■■□ 3.29
SREBF1-206ENST00000423161 CUX2O14529 1486 aa35.5■■■■□ 3.27
SREBF1-206ENST00000423161 NESP48681 1621 aa35.49■■■■□ 3.27
SREBF1-206ENST00000423161 LAMC3Q9Y6N6 1575 aa35.3■■■■□ 3.24
SREBF1-206ENST00000423161 DNAJC5Q9H3Z4 198 aa35.24■■■■□ 3.23
SREBF1-206ENST00000423161 WIZO95785 1651 aa35.24■■■■□ 3.23
SREBF1-206ENST00000423161 THOC2Q8NI27 1593 aaKnown RBP35.15■■■■□ 3.22
SREBF1-206ENST00000423161 KIF21AQ7Z4S6 1674 aa35.12■■■■□ 3.21
SREBF1-206ENST00000423161 PDS5BQ9NTI5 1447 aa35.04■■■■□ 3.2
SREBF1-206ENST00000423161 CADPSQ9ULU8 1353 aa34.97■■■■□ 3.19
SREBF1-206ENST00000423161 RSF1Q96T23 1441 aaPredicted RBP34.89■■■■□ 3.18
SREBF1-206ENST00000423161 TOP2AP11388 1531 aaKnown RBP34.78■■■■□ 3.16
SREBF1-206ENST00000423161 MRC2Q9UBG0 1479 aa34.75■■■■□ 3.15
SREBF1-206ENST00000423161 WDR62O43379 1518 aa34.67■■■■□ 3.14
SREBF1-206ENST00000423161 CEP164Q9UPV0 1460 aa34.65■■■■□ 3.14
SREBF1-206ENST00000423161 CFTRP13569 1480 aa34.62■■■■□ 3.13
SREBF1-206ENST00000423161 FANCD2Q9BXW9 1451 aa34.61■■■■□ 3.13
SREBF1-206ENST00000423161 PRDM2Q13029 1718 aa34.46■■■■□ 3.11
SREBF1-206ENST00000423161 CCDC88BA6NC98 1476 aa34.34■■■■□ 3.09
SREBF1-206ENST00000423161 URB2Q14146 1524 aaKnown RBP34.32■■■■□ 3.08
SREBF1-206ENST00000423161 TOPBP1Q92547 1522 aa33.99■■■■□ 3.03
SREBF1-206ENST00000423161 IFT140Q96RY7 1462 aa33.93■■■■□ 3.02
SREBF1-206ENST00000423161 ABCC8Q09428 1581 aa33.9■■■■□ 3.02
SREBF1-206ENST00000423161 DNMBPQ6XZF7 1577 aa33.89■■■■□ 3.02
SREBF1-206ENST00000423161 ZNF608Q9ULD9 1512 aaPredicted RBP33.86■■■■□ 3.01
SREBF1-206ENST00000423161 OSCARQ8IYS5 282 aa33.85■■■■□ 3.01
SREBF1-206ENST00000423161 TRIM41Q8WV44 630 aa33.79■■■■□ 3
SREBF1-206ENST00000423161 EIF4G3O43432 1585 aaKnown RBP33.75■■■□□ 2.99
SREBF1-206ENST00000423161 TARBP1Q13395 1621 aaKnown RBP33.7■■■□□ 2.99
SREBF1-206ENST00000423161 POLA1P09884 1462 aaPredicted RBP33.63■■■□□ 2.97
SREBF1-206ENST00000423161 AQRO60306 1485 aaKnown RBP eCLIP33.56■■■□□ 2.968e-19■■□□□ 11.4
SREBF1-206ENST00000423161 CHD1O14646 1710 aa33.51■■■□□ 2.96
SREBF1-206ENST00000423161 RAD54L2Q9Y4B4 1467 aa33.5■■■□□ 2.95
SREBF1-206ENST00000423161 RIMBP3CA6NJZ7 1639 aa33.5■■■□□ 2.95
SREBF1-206ENST00000423161 RIMBP3BA6NNM3 1639 aa33.5■■■□□ 2.95
SREBF1-206ENST00000423161 RIMBP3Q9UFD9 1639 aa33.5■■■□□ 2.95
SREBF1-206ENST00000423161 FGD5Q6ZNL6 1462 aa33.46■■■□□ 2.95
SREBF1-206ENST00000423161 SOGA1O94964 1423 aa33.45■■■□□ 2.95
SREBF1-206ENST00000423161 CUX1P39880 1505 aa33.45■■■□□ 2.95
SREBF1-206ENST00000423161 SUPT5HO00267 1087 aaKnown RBP33.44■■■□□ 2.94
SREBF1-206ENST00000423161 WDR97A6NE52 1622 aa33.38■■■□□ 2.93
SREBF1-206ENST00000423161 ARHGEF11O15085 1522 aa33.37■■■□□ 2.93
SREBF1-206ENST00000423161 TDRD9Q8NDG6 1382 aaKnown RBP33.36■■■□□ 2.93
SREBF1-206ENST00000423161 FBLN2P98095 1184 aa33.3■■■□□ 2.92
SREBF1-206ENST00000423161 SNAPC4Q5SXM2 1469 aa33.25■■■□□ 2.91
SREBF1-206ENST00000423161 GRIN2BQ13224 1484 aa33.18■■■□□ 2.9
SREBF1-206ENST00000423161 MAGI1Q96QZ7 1491 aaPredicted RBP33.18■■■□□ 2.9
SREBF1-206ENST00000423161 PBRM1Q86U86 1689 aa33.17■■■□□ 2.9
SREBF1-206ENST00000423161 ABCA10Q8WWZ4 1543 aa33.08■■■□□ 2.89
SREBF1-206ENST00000423161 GAPVD1Q14C86 1478 aa33.08■■■□□ 2.89
SREBF1-206ENST00000423161 CHMP7Q8WUX9 453 aaPredicted RBP33.07■■■□□ 2.88
SREBF1-206ENST00000423161 SYNJ1O43426 1573 aa33.07■■■□□ 2.88
SREBF1-206ENST00000423161 ABCA5Q8WWZ7 1642 aa33.06■■■□□ 2.88
SREBF1-206ENST00000423161 CLASP1Q7Z460 1538 aa33.06■■■□□ 2.88
SREBF1-206ENST00000423161 SYNJ2O15056 1496 aa33.05■■■□□ 2.88
SREBF1-206ENST00000423161 ARAP1Q96P48 1450 aa33.05■■■□□ 2.88
SREBF1-206ENST00000423161 CYB5RLQ6IPT4 315 aa33.04■■■□□ 2.88
SREBF1-206ENST00000423161 BIVM-ERCC5R4GMW8 1640 aa33.01■■■□□ 2.87
SREBF1-206ENST00000423161 TOP2BQ02880 1626 aa32.99■■■□□ 2.87
SREBF1-206ENST00000423161 WRNQ14191 1432 aaPredicted RBP eCLIP32.95■■■□□ 2.873e-9■■■■■ 32
SREBF1-206ENST00000423161 ADAMTS12P58397 1594 aa32.8■■■□□ 2.84
SREBF1-206ENST00000423161 GRIN2AQ12879 1464 aa32.76■■■□□ 2.84
SREBF1-206ENST00000423161 ERICH3Q5RHP9 1530 aa32.68■■■□□ 2.82
SREBF1-206ENST00000423161 FHAD1B1AJZ9 1412 aa32.66■■■□□ 2.82
SREBF1-206ENST00000423161 CEP170Q5SW79 1584 aa32.66■■■□□ 2.82
SREBF1-206ENST00000423161 TRHP20396 242 aaPredicted RBP32.65■■■□□ 2.82
SREBF1-206ENST00000423161 NUP160Q12769 1436 aa32.62■■■□□ 2.81
SREBF1-206ENST00000423161 ERCC6L2Q5T890 1561 aa32.55■■■□□ 2.8
SREBF1-206ENST00000423161 SHROOM2Q13796 1616 aa32.52■■■□□ 2.8
SREBF1-206ENST00000423161 RUSC2Q8N2Y8 1516 aa32.34■■■□□ 2.77
SREBF1-206ENST00000423161 PRG4Q92954 1404 aaPredicted RBP32.3■■■□□ 2.76
SREBF1-206ENST00000423161 KIF27Q86VH2 1401 aa32.29■■■□□ 2.76
SREBF1-206ENST00000423161 CUL7Q14999 1698 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms