RNA–Protein interactions for RNA: ENST00000423161.3

SREBF1-206, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-206ENST00000423161 AQRO60306 1485 aaKnown RBP eCLIP33.56■■■□□ 2.968e-19■■□□□ 11.4
SREBF1-206ENST00000423161 EFTUD2Q15029 972 aaKnown RBP eCLIP17.19■□□□□ 0.341e-14■■■■■ 28.2
SREBF1-206ENST00000423161 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.68■■□□□ 1.067e-14■■■□□ 16.2
SREBF1-206ENST00000423161 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.36■□□□□ 0.533e-12■■□□□ 13.6
SREBF1-206ENST00000423161 GTF2F1P35269 517 aaKnown RBP eCLIP20.88■□□□□ 0.934e-11■■■□□ 15.8
SREBF1-206ENST00000423161 PCBP1Q15365 356 aaKnown RBP eCLIP20.57■□□□□ 0.887e-11■■■■□ 19.9
SREBF1-206ENST00000423161 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.22■□□□□ 0.998e-11■■■■■ 32.9
SREBF1-206ENST00000423161 SF3B4Q15427 424 aaKnown RBP eCLIP16.88■□□□□ 0.291e-10■■■■■ 27.7
SREBF1-206ENST00000423161 HNRNPKP61978 463 aaKnown RBP eCLIP18.78■□□□□ 0.65e-10■■■□□ 18.8
SREBF1-206ENST00000423161 PUM1Q14671 1186 aaKnown RBP eCLIP19.81■□□□□ 0.768e-10■□□□□ 10.5
SREBF1-206ENST00000423161 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.75■■■□□ 2.191e-9■□□□□ 9.8
SREBF1-206ENST00000423161 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.4■■□□□ 1.181e-9■■■■□ 21.1
SREBF1-206ENST00000423161 PCBP2Q15366 365 aaKnown RBP eCLIP17.05■□□□□ 0.322e-9■■□□□ 12.4
SREBF1-206ENST00000423161 WRNQ14191 1432 aaPredicted RBP eCLIP32.95■■■□□ 2.873e-9■■■■■ 32
SREBF1-206ENST00000423161 RBM15Q96T37 977 aaKnown RBP eCLIP18.56■□□□□ 0.565e-9■■□□□ 11.5
SREBF1-206ENST00000423161 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.08■□□□□ 0.177e-9■■■□□ 14.7
SREBF1-206ENST00000423161 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.15■□□□□ 0.51e-8■■■■■ 31.6
SREBF1-206ENST00000423161 DDX3XO00571 662 aaKnown RBP eCLIP18.59■□□□□ 0.572e-8■□□□□ 10.8
SREBF1-206ENST00000423161 TIA1P31483 386 aaKnown RBP eCLIP16.8■□□□□ 0.282e-8■■■□□ 15.4
SREBF1-206ENST00000423161 PPIGQ13427 754 aaKnown RBP eCLIP21.69■■□□□ 1.064e-8■■□□□ 12.7
SREBF1-206ENST00000423161 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.24■□□□□ 0.674e-8■■□□□ 13
SREBF1-206ENST00000423161 ZRANB2O95218 330 aaKnown RBP eCLIP18.14■□□□□ 0.495e-8■■□□□ 13.6
SREBF1-206ENST00000423161 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.5■□□□□ 0.396e-8■■□□□ 13.8
SREBF1-206ENST00000423161 AATFQ9NY61 560 aaKnown RBP eCLIP22.66■■□□□ 1.221e-7■□□□□ 8.1
SREBF1-206ENST00000423161 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.49■□□□□ 0.232e-7■■□□□ 11.4
SREBF1-206ENST00000423161 EWSR1Q01844 656 aaKnown RBP eCLIP13.69□□□□□ -0.222e-7■■■■□ 20.1
SREBF1-206ENST00000423161 EIF4G2P78344 907 aaKnown RBP eCLIP25.55■■□□□ 1.682e-7■■■■□ 25.1
SREBF1-206ENST00000423161 SMNDC1O75940 238 aaKnown RBP eCLIP16.69■□□□□ 0.263e-7■■□□□ 14
SREBF1-206ENST00000423161 XRCC6P12956 609 aaKnown RBP eCLIP20.51■□□□□ 0.873e-7■□□□□ 10.9
SREBF1-206ENST00000423161 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.33■■□□□ 1.174e-7■■■□□ 15.4
SREBF1-206ENST00000423161 DKC1O60832 514 aaKnown RBP eCLIP20.71■□□□□ 0.915e-7■■■■□ 19.3
SREBF1-206ENST00000423161 TARDBPQ13148 414 aaKnown RBP eCLIP18.82■□□□□ 0.65e-7■■■■□ 20.7
SREBF1-206ENST00000423161 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.57■□□□□ 0.725e-7■■■■■ 97.7
SREBF1-206ENST00000423161 SF3A3Q12874 501 aaKnown RBP eCLIP15.76■□□□□ 0.116e-7■■■■□ 23.5
SREBF1-206ENST00000423161 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.22■□□□□ 0.677e-7■■■□□ 17.9
SREBF1-206ENST00000423161 SRSF7Q16629 238 aaKnown RBP eCLIP14.2□□□□□ -0.141e-6■■□□□ 12.8
SREBF1-206ENST00000423161 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.88■□□□□ 0.451e-6■□□□□ 10.8
SREBF1-206ENST00000423161 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.1■□□□□ 0.651e-6■■■■□ 25.1
SREBF1-206ENST00000423161 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.55■■■□□ 2.481e-6■■□□□ 11.6
SREBF1-206ENST00000423161 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.3■□□□□ 0.842e-6■■■□□ 17.8
SREBF1-206ENST00000423161 PRPF4O43172 522 aaKnown RBP eCLIP17.6■□□□□ 0.412e-6■□□□□ 9.3
SREBF1-206ENST00000423161 SRSF1Q07955 248 aaKnown RBP eCLIP17.9■□□□□ 0.462e-6■■□□□ 11.6
SREBF1-206ENST00000423161 NKRFO15226 690 aaKnown RBP eCLIP21.6■■□□□ 1.052e-6■■□□□ 12
SREBF1-206ENST00000423161 SF3B1O75533 1304 aaKnown RBP eCLIP20.39■□□□□ 0.853e-6■■■■■ 69.2
SREBF1-206ENST00000423161 NONOQ15233 471 aaKnown RBP eCLIP20.82■□□□□ 0.923e-6■■■□□ 17.5
SREBF1-206ENST00000423161 HNRNPUQ00839 825 aaKnown RBP eCLIP22.82■■□□□ 1.243e-6■■■■□ 20.1
SREBF1-206ENST00000423161 FUSP35637 526 aaKnown RBP eCLIP12.56□□□□□ -0.44e-6■□□□□ 11.3
SREBF1-206ENST00000423161 WDR43Q15061 677 aaKnown RBP eCLIP24.23■■□□□ 1.474e-6■■□□□ 14
SREBF1-206ENST00000423161 AARSP49588 968 aaKnown RBP eCLIP20.09■□□□□ 0.814e-6■■■□□ 17.5
SREBF1-206ENST00000423161 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.48■□□□□ 0.717e-6■□□□□ 9.4
SREBF1-206ENST00000423161 GPKOWQ92917 476 aaPredicted RBP eCLIP21.37■■□□□ 1.017e-6■□□□□ 8.1
SREBF1-206ENST00000423161 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.94■■□□□ 1.18e-6■■■□□ 18.6
Retrieved 52 of 52 RNA–protein pairs in 10.8 ms