RNA–Protein interactions for RNA: ENST00000422489.1

NUP50-206, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 543 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-206ENST00000422489 GPR162Q16538 588 aa12.56□□□□□ -0.4
NUP50-206ENST00000422489 LINC00116Q8NCU8 138 aa12.56□□□□□ -0.4
NUP50-206ENST00000422489 SHANK3Q9BYB0 1731 aa12.56□□□□□ -0.4
NUP50-206ENST00000422489 U2SURPO15042 1029 aaKnown RBP12.55□□□□□ -0.4
NUP50-206ENST00000422489 NFATC2IPQ8NCF5 419 aa12.55□□□□□ -0.4
NUP50-206ENST00000422489 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.54□□□□□ -0.4
NUP50-206ENST00000422489 GNPATO15228 680 aa12.54□□□□□ -0.4
NUP50-206ENST00000422489 PTCD1O75127 700 aaKnown RBP12.54□□□□□ -0.4
NUP50-206ENST00000422489 AMIGO3Q86WK7 504 aa12.53□□□□□ -0.4
NUP50-206ENST00000422489 ANKRD26Q9UPS8 1709 aa12.52□□□□□ -0.41
NUP50-206ENST00000422489 AKAP4Q5JQC9 854 aa12.52□□□□□ -0.41
NUP50-206ENST00000422489 NLGN2Q8NFZ4 835 aa12.52□□□□□ -0.41
NUP50-206ENST00000422489 LGR6Q9HBX8 967 aa12.52□□□□□ -0.41
NUP50-206ENST00000422489 SSFA2P28290 1259 aa12.51□□□□□ -0.41
NUP50-206ENST00000422489 MTHFSDQ2M296 383 aaKnown RBP12.51□□□□□ -0.41
NUP50-206ENST00000422489 TRAPPC3LQ5T215 181 aa12.51□□□□□ -0.41
NUP50-206ENST00000422489 SLC4A9Q96Q91 983 aa12.51□□□□□ -0.41
NUP50-206ENST00000422489 RTCBQ9Y3I0 505 aaKnown RBP12.51□□□□□ -0.41
NUP50-206ENST00000422489 PLEKHG2Q9H7P9 1386 aa12.51□□□□□ -0.41
NUP50-206ENST00000422489 LY75O60449 1722 aa12.51□□□□□ -0.41
NUP50-206ENST00000422489 PKD1L3Q7Z443 1732 aa12.51□□□□□ -0.41
NUP50-206ENST00000422489 HOXD11P31277 338 aaPredicted RBP12.5□□□□□ -0.41
NUP50-206ENST00000422489 CFAP53Q96M91 514 aa12.5□□□□□ -0.41
NUP50-206ENST00000422489 KDM6AO15550 1401 aaPredicted RBP12.49□□□□□ -0.41
NUP50-206ENST00000422489 KDRP35968 1356 aa12.49□□□□□ -0.41
NUP50-206ENST00000422489 MAP3K5Q99683 1374 aa12.49□□□□□ -0.41
NUP50-206ENST00000422489 RNMTO43148 476 aaKnown RBP12.49□□□□□ -0.41
NUP50-206ENST00000422489 TOGARAM1Q9Y4F4 1720 aa12.48□□□□□ -0.41
NUP50-206ENST00000422489 RC3H1Q5TC82 1133 aaKnown RBP12.48□□□□□ -0.41
NUP50-206ENST00000422489 ARHGEF1Q92888 912 aaKnown RBP12.48□□□□□ -0.41
NUP50-206ENST00000422489 SLC52A2Q9HAB3 445 aa12.48□□□□□ -0.41
NUP50-206ENST00000422489 NPC1L1Q9UHC9 1359 aa12.47□□□□□ -0.41
NUP50-206ENST00000422489 RPS6KA4O75676 772 aa12.47□□□□□ -0.41
NUP50-206ENST00000422489 RFC4P35249 363 aa12.47□□□□□ -0.41
NUP50-206ENST00000422489 SLC39A6Q13433 755 aa12.47□□□□□ -0.41
NUP50-206ENST00000422489 NUDCQ9Y266 331 aa12.47□□□□□ -0.41
NUP50-206ENST00000422489 CD2APQ9Y5K6 639 aa12.47□□□□□ -0.41
NUP50-206ENST00000422489 WWC3Q9ULE0 1092 aa12.46□□□□□ -0.41
NUP50-206ENST00000422489 C4BP0C0L5 1744 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 GRIN3BO60391 1043 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 MMP10P09238 476 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 U2AF1L5P0DN76 240 aaPredicted RBP12.45□□□□□ -0.42
NUP50-206ENST00000422489 PPP2R1AP30153 589 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 CRKLP46109 303 aaKnown RBP12.45□□□□□ -0.42
NUP50-206ENST00000422489 U2AF1Q01081 240 aaKnown RBP eCLIP12.45□□□□□ -0.42
NUP50-206ENST00000422489 DNAJC10Q8IXB1 793 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 NLGN1Q8N2Q7 840 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 RNF216Q9NWF9 866 aaPredicted RBP12.45□□□□□ -0.42
NUP50-206ENST00000422489 ITGB4P16144 1822 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 C5P01031 1676 aa12.45□□□□□ -0.42
NUP50-206ENST00000422489 CNTNAP4Q9C0A0 1308 aa12.44□□□□□ -0.42
NUP50-206ENST00000422489 GNAT3A8MTJ3 354 aa12.44□□□□□ -0.42
NUP50-206ENST00000422489 PRKAR2BP31323 418 aa12.44□□□□□ -0.42
NUP50-206ENST00000422489 TEFQ10587 303 aa12.44□□□□□ -0.42
NUP50-206ENST00000422489 GAS2L2Q8NHY3 880 aa12.44□□□□□ -0.42
NUP50-206ENST00000422489 YBX3P16989 372 aaKnown RBP eCLIP12.43□□□□□ -0.42
NUP50-206ENST00000422489 TTC5Q8N0Z6 440 aa12.43□□□□□ -0.42
NUP50-206ENST00000422489 PHACTR3Q96KR7 559 aa12.43□□□□□ -0.42
NUP50-206ENST00000422489 QSER1Q2KHR3 1735 aa12.42□□□□□ -0.42
NUP50-206ENST00000422489 GYS1P13807 737 aa12.42□□□□□ -0.42
NUP50-206ENST00000422489 INTS5Q6P9B9 1019 aaKnown RBP12.42□□□□□ -0.42
NUP50-206ENST00000422489 ZNF784Q8NCA9 323 aaPredicted RBP12.42□□□□□ -0.42
NUP50-206ENST00000422489 IL17REQ8NFR9 667 aa12.42□□□□□ -0.42
NUP50-206ENST00000422489 SRP68Q9UHB9 627 aaKnown RBP12.42□□□□□ -0.42
NUP50-206ENST00000422489 PARP3Q9Y6F1 533 aa12.42□□□□□ -0.42
NUP50-206ENST00000422489 CCDC87Q9NVE4 849 aa12.41□□□□□ -0.42
NUP50-206ENST00000422489 TUBGCP6Q96RT7 1819 aa12.41□□□□□ -0.42
NUP50-206ENST00000422489 ZPR1O75312 459 aa12.4□□□□□ -0.42
NUP50-206ENST00000422489 CYP19A1P11511 503 aaPredicted RBP12.4□□□□□ -0.42
NUP50-206ENST00000422489 CANXP27824 592 aaKnown RBP12.4□□□□□ -0.42
NUP50-206ENST00000422489 RSPH6AQ9H0K4 717 aa12.4□□□□□ -0.42
NUP50-206ENST00000422489 A0A0G2JLW4 131 aa12.39□□□□□ -0.43
NUP50-206ENST00000422489 FKBP8Q14318 412 aa12.39□□□□□ -0.43
NUP50-206ENST00000422489 NCBP3Q53F19 620 aaKnown RBP12.39□□□□□ -0.43
NUP50-206ENST00000422489 USPL1Q5W0Q7 1092 aa12.39□□□□□ -0.43
NUP50-206ENST00000422489 RTF1Q92541 710 aaKnown RBP12.39□□□□□ -0.43
NUP50-206ENST00000422489 BTBD11A6QL63 1104 aa12.38□□□□□ -0.43
NUP50-206ENST00000422489 FCHSD2O94868 740 aa12.38□□□□□ -0.43
NUP50-206ENST00000422489 STARD3NLO95772 234 aa12.38□□□□□ -0.43
NUP50-206ENST00000422489 VSIG10Q8N0Z9 540 aa12.38□□□□□ -0.43
NUP50-206ENST00000422489 TAF1LQ8IZX4 1826 aa12.38□□□□□ -0.43
NUP50-206ENST00000422489 COL3A1P02461 1466 aaPredicted RBP12.38□□□□□ -0.43
NUP50-206ENST00000422489 NEFMP07197 916 aa12.37□□□□□ -0.43
NUP50-206ENST00000422489 TGFB2P61812 414 aa12.37□□□□□ -0.43
NUP50-206ENST00000422489 DDX10Q13206 875 aaKnown RBP12.37□□□□□ -0.43
NUP50-206ENST00000422489 ZNF790Q6PG37 636 aa12.37□□□□□ -0.43
NUP50-206ENST00000422489 MCM10Q7L590 875 aa12.37□□□□□ -0.43
NUP50-206ENST00000422489 ZNF496Q96IT1 587 aaPredicted RBP12.37□□□□□ -0.43
NUP50-206ENST00000422489 ZBTB1Q9Y2K1 713 aa12.37□□□□□ -0.43
NUP50-206ENST00000422489 ZNF330Q9Y3S2 320 aaPredicted RBP12.37□□□□□ -0.43
NUP50-206ENST00000422489 USP42Q9H9J4 1324 aaKnown RBP12.37□□□□□ -0.43
NUP50-206ENST00000422489 KCNQ3O43525 872 aa12.36□□□□□ -0.43
NUP50-206ENST00000422489 DPEP1P16444 411 aa12.36□□□□□ -0.43
NUP50-206ENST00000422489 DCTN1Q14203 1278 aa12.36□□□□□ -0.43
NUP50-206ENST00000422489 FMNL2Q96PY5 1086 aa12.36□□□□□ -0.43
NUP50-206ENST00000422489 TEX13AQ9BXU3 409 aaPredicted RBP12.36□□□□□ -0.43
NUP50-206ENST00000422489 BCS1LQ9Y276 419 aa12.36□□□□□ -0.43
NUP50-206ENST00000422489 SOS1Q07889 1333 aaPredicted RBP12.36□□□□□ -0.43
NUP50-206ENST00000422489 COL24A1Q17RW2 1714 aa12.35□□□□□ -0.43
NUP50-206ENST00000422489 TM4SF1P30408 202 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms